ViewGene
Locus Name:
GeneID:
Location:

GeneID:713
TrivialName: PA14_05650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05650
PAO1 Ortholog Locus:PA0435
Sequence Length:1479
Protein Length:492
Start: 501918
Stop: 503396
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03824.1|AE004480_8 (AE004480) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 487/492 (98%), Positives = 488/492 (99%)
Sequence:
ATGAAACGCTACCTGTACCTGTGGCACCGCTGGCTGGGCATCGGCTGCTGCCTGCTGATGGTGCTCTGGTTC
GTCTCCGGCATGGTCATGCTGTATGTCGGCTATCCCAAGCTGACTCCGCTGGAACGCCTGGCCCACCTGCCC
GAGCTGGACGGCTGCGAGGCCTGCGTACCGCTGCGGACGGCCCTCGCCGGCGGCGATGGAAAGACCCCGCGG
AGCATCCGGCTGGCCAGCGTAGGAGGCCTGCCGACCTACCTGCTGGACGATGCCGACGGACGCACGCGTGCG
CTGGCGGCGCGCGACGGCCGACCGCTGGCGGTGGACGCGGACAGGGTGCTGGCTTCGGCCCGTGCTTTCAGC
GGCGAAGTACCGATGCAGTTGCAAGGGCGGATCGAGGAAGACGCCTGGACCCATACCCGCAACCTCGATCCG
CACCGGCCGCTATGGCGGGTGCAGACCGCGGACGAGGAGGGCCGGCTGCTCTACCTGTCCTCGCAGACCGGC
GAGGTGGTACGCGACGCCAGCCGCCGGGAGCGCGCCTGGAACTGGCTCGGCGCCTGGCTGCACTGGCTCTAT
CCGCTGCGCGGCGGCTGGTTCGACGGGCAGTGGGCGAACCTGGTGATCGGCCTGTCGCTGCTGGCGACCCTG
GCGACCGTCCTCGGCATCCTCGTCGGCCTGCTCCGCTGGCGCTTCCGCAAGCCCTACCGCAGCGGCTCGCGC
TCGCCCTATGCGGGCGGTTTCCAGCGCTGGCACCACCTCGCCGGCCTGCTCTTCGGCGCGCTGGTGCTGAGC
TGGATCTTCAGCGGGCTGATGTCGATGAATCCGTGGAACCTGTTCGGCCGCGGCACGCCGCTCGACCTCGCG
GCCTACCAGGGCGGTAGCTGGGACCGGGCGCTGCCCGCCGGACTGGAGGCGGACGCTGTCCTGCGGCGCTTG
CGTGCCGCCGGGTTGCGGGTGCGCGAGCTGGAGTGGCGGGCGCTCGACGGCGAGCCCTATGCGCTCGGGCGC
AGCGCCAGCGGCAACAGCCTGCTGCTGACGGCGGATGGCGAAATCCTCCGCGAGCTACCCGCGGATCGCCTG
CTGGCGGCGGCTCGCGCGCTGCTGCCGGGCGTGCCGATGCAGGCCGAACGGTTGGAACGCTACGACTTCTAT
TACTACCCGCGCGAAGAACACAGCATGATGGGCTACCTGGAGCGGCGCCTGCCGGTCTGGCGCCTGCGTTTC
GACGATCCCCGGCATACCTGGGTGCACCTGGATCCCTACAGCGGCGCGGTGGTTGGCGTGCTCGACGACGGT
CGGCGCGGCAGCCGCTGGCTGTTTTCCCTGTTGCATAGCTGGGACTGGCTGCCGCTGCTGACCCGGCGTCCG
CTGTGGGACCTGTGGATGCTCGGTTTCAGCCTCGGCGGCCTGGTGGTCTGCGCCAGCGGCTGCTGGATCGGC
TGGCGTCGCCTGCGCGGCCGCCGTCCGAAGCGTCGCTGA
Translation:
MKRYLYLWHRWLGIGCCLLMVLWFVSGMVMLYVGYPKLTPLERLAHLPELDGCEACVPLRTALAGGDGKTPR
SIRLASVGGLPTYLLDDADGRTRALAARDGRPLAVDADRVLASARAFSGEVPMQLQGRIEEDAWTHTRNLDP
HRPLWRVQTADEEGRLLYLSSQTGEVVRDASRRERAWNWLGAWLHWLYPLRGGWFDGQWANLVIGLSLLATL
ATVLGILVGLLRWRFRKPYRSGSRSPYAGGFQRWHHLAGLLFGALVLSWIFSGLMSMNPWNLFGRGTPLDLA
AYQGGSWDRALPAGLEADAVLRRLRAAGLRVRELEWRALDGEPYALGRSASGNSLLLTADGEILRELPADRL
LAAARALLPGVPMQAERLERYDFYYYPREEHSMMGYLERRLPVWRLRFDDPRHTWVHLDPYSGAVVGVLDDG
RRGSRWLFSLLHSWDWLPLLTRRPLWDLWMLGFSLGGLVVCASGCWIGWRRLRGRRPKRR*
AnnotationID:722GeneID:713
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 12:12:16
Gene Name:
Confidence Code:3
GeneProduct:putative exported protein
Cell Localization:()
Synonyms:PA0435
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE31793.1| (BX640440) putative exported protein [Bordetella bronchiseptica]
          Length = 489

 Score =  466 bits (1200), Expect = e-130
 Identities = 257/495 (51%), Positives = 314/495 (63%), Gaps = 24/495 (4%)

>emb|CAE36380.1| (BX640426) putative exported protein [Bordetella parapertussis]
          Length = 489

 Score =  465 bits (1197), Expect = e-130
 Identities = 256/495 (51%), Positives = 314/495 (63%), Gaps = 24/495 (4%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1429




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18571




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33758




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:713_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:713
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1224
                           PA0435_tr
                           translation of PA0435
                           492
                           98.98
                           99.18
                           0
                           2643.0
     

     
     
46749
                           gb|AAG03824.1|AE004480_8
                           (AE004480) hypothetical protein PA0435 [Pseudomonas aeruginosa PAO1]
                           492
                           98.98
                           99.18
                           0
                           2643.0
     

     
     
46750
                           gb|AAN68937.1|AE016525_4
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           504
                           52.18
                           64.28
                           19
                           1255.0
     

     
     
46751
                           emb|CAE31793.1|
                           (BX640440) putative exported protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           507
                           50.69
                           62.13
                           33
                           1225.0
     

     
     
46752
                           emb|CAE36380.1|
                           (BX640426) putative exported protein [Bordetella parapertussis]
                           507
                           50.49
                           62.13
                           33
                           1222.0
     

     






      

          
GC ORFID: 43715How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0435Glimmer Score: 

          
Start: 6303260Stop: 6304738

          
Length: 1479


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0435 translation of PA0435Homolog Bit Score 1022.0

          
Other Homologs:  t_PA0435 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGCTACCTGTACCTGTGGCACCGCTGGCTGGGCATCGGCTGCTGCCTGCTGATGGTGCTCTGGTTC 
GTCTCCGGCATGGTCATGCTGTATGTCGGCTATCCCAAGCTGACTCCGCTGGAACGCCTGGCCCACCTGCCC 
GAGCTGGACGGCTGCGAGGCCTGCGTACCGCTGCGGACGGCCCTCGCCGGCGGCGATGGAAAGACCCCGCGG 
AGCATCCGGCTGGCCAGCGTAGGAGGCCTGCCGACCTACCTGCTGGACGATGCCGACGGACGCACGCGTGCG 
CTGGCGGCGCGCGACGGCCGACCGCTGGCGGTGGACGCGGACAGGGTGCTGGCTTCGGCCCGTGCTTTCAGC 
GGCGAAGTACCGATGCAGTTGCAAGGGCGGATCGAGGAAGACGCCTGGACCCATACCCGCAACCTCGATCCG 
CACCGGCCGCTATGGCGGGTGCAGACCGCGGACGAGGAGGGCCGGCTGCTCTACCTGTCCTCGCAGACCGGC 
GAGGTGGTACGCGACGCCAGCCGCCGGGAGCGCGCCTGGAACTGGCTCGGCGCCTGGCTGCACTGGCTCTAT 
CCGCTGCGCGGCGGCTGGTTCGACGGGCAGTGGGCGAACCTGGTGATCGGCCTGTCGCTGCTGGCGACCCTG 
GCGACCGTCCTCGGCATCCTCGTCGGCCTGCTCCGCTGGCGCTTCCGCAAGCCCTACCGCAGCGGCTCGCGC 
TCGCCCTATGCGGGCGGTTTCCAGCGCTGGCACCACCTCGCCGGCCTGCTCTTCGGCGCGCTGGTGCTGAGC 
TGGATCTTCAGCGGGCTGATGTCGATGAATCCGTGGAACCTGTTCGGCCGCGGCACGCCGCTCGACCTCGCG 
GCCTACCAGGGCGGTAGCTGGGACCGGGCGCTGCCCGCCGGACTGGAGGCGGACGCTGTCCTGCGGCGCTTG 
CGTGCCGCCGGGTTGCGGGTGCGCGAGCTGGAGTGGCGGGCGCTCGACGGCGAGCCCTATGCGCTCGGGCGC 
AGCGCCAGCGGCAACAGCCTGCTGCTGACGGCGGATGGCGAAATCCTCCGCGAGCTACCCGCGGATCGCCTG 
CTGGCGGCGGCTCGCGCGCTGCTGCCGGGCGTGCCGATGCAGGCCGAACGGTTGGAACGCTACGACTTCTAT 
TACTACCCGCGCGAAGAACACAGCATGATGGGCTACCTGGAGCGGCGCCTGCCGGTCTGGCGCCTGCGTTTC 
GACGATCCCCGGCATACCTGGGTGCACCTGGATCCCTACAGCGGCGCGGTGGTTGGCGTGCTCGACGACGGT 
CGGCGCGGCAGCCGCTGGCTGTTTTCCCTGTTGCATAGCTGGGACTGGCTGCCGCTGCTGACCCGGCGTCCG 
CTGTGGGACCTGTGGATGCTCGGTTTCAGCCTCGGCGGCCTGGTGGTCTGCGCCAGCGGCTGCTGGATCGGC 
TGGCGTCGCCTGCGCGGCCGCCGTCCGAAGCGTCGCTGA