ViewGene
Locus Name:
GeneID:
Location:

GeneID:7122
TrivialName: PA14_05120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05120
PAO1 Ortholog Locus:
Sequence Length:171
Protein Length:56
Start: 448839
Stop: 448669
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO09948.1|AE016801_267 (AE016801) Uncharacterized conserved protein [Vibrio vulnificus CMCP6]
Identities = 27/49 (55%), Positives = 37/49 (75%)
Sequence:
GTGGAGGGCAAGGCCAACGCCCATCTGCTGGCCTTCCTCGGCAAGGCCTTCGGCGTGGCCAAGAGCCTGGTG
AGTCTCGAAAGCGGCGAGCTGAACCGGCAGAAACGGGTGCGCATCCGCCGTCCGACCCGATTGCCGGAGGAA
CTGGGGATCACCGCTCGACCCGCTTGA
Translation:
MEGKANAHLLAFLGKAFGVAKSLVSLESGELNRQKRVRIRRPTRLPEELGITARPA*
AnnotationID:7122GeneID:7122
AnnotatorUID: danlee
Modification Date/Time: 2006-05-03 15:03:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84324478|ref|ZP_00972536.1|  COG1872: Uncharacterized conserved protein [Pseudomonas aeruginosa 
2192]
 gi|84318693|ref|ZP_00967114.1|  COG1872: Uncharacterized conserved protein [Pseudomonas aeruginosa 
C3719]
 gi|94415769|ref|ZP_01295605.1|  hypothetical protein PaerP_01002546 [Pseudomonas aeruginosa PA7]
Length=56

 Score =  108 bits (270),  Expect = 6e-23
 Identities = 55/56 (98%), Positives = 55/56 (98%), Gaps = 0/56 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:
ORF present but not annotated in PAO1.


















    ReferenceID:16847




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31316




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33711




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7122_cdd.html


    		




 
URL:









      

          
GC ORFID: 50124How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6250181Stop: 6250011

          
Length: 171


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGAGGGCAAGGCCAACGCCCATCTGCTGGCCTTCCTCGGCAAGGCCTTCGGCGTGGCCAAGAGCCTGGTG 
AGTCTCGAAAGCGGCGAGCTGAACCGGCAGAAACGGGTGCGCATCCGCCGTCCGACCCGATTGCCGGAGGAA 
CTGGGGATCACCGCTCGACCCGCTTGA