ViewGene
Locus Name:
GeneID:
Location:

GeneID:712
TrivialName: PA14_29210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29210
PAO1 Ortholog Locus:PA2701
Sequence Length:1590
Protein Length:529
Start: 2526804
Stop: 2525215
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06089.1|AE004698_5 (AE004698) probable MFS transporter [Pseudomonas aeruginosa PAO1]
Identities = 526/529 (99%), Positives = 527/529 (99%)
Sequence:
ATGACCGCACCCGCCGCCTCACCCTGGAGTCCCCTGCGCCAAGCCACCTTCCGCTGGCTATGGCTGGCCAGC
ATCGCCTCGAACATCGGCACCTGGATGCACGAGGTGGGCGCCGGCTGGCTGATGACCTCGCTCTCCGCCAGC
CCGCTGAACGTGGCCCTGGTGCAGGTCGCCGGATCGCTGCCGATGTTCTTCCTGGCCCTGCCGGCCGGCGCC
CTCGCCGATATCGTCGACAAGCGCCGCTACCTGCTCGGCGTGCAATTGTGGATGGCCTTGGTGGCCACCCTG
CTGGCCAGCCTCACCCTGCTCCAGTTGACCAGCGTCTGGCTGCTGCTCGGCCTGACCCTGTGCATGGGCATC
GGCACCGCGCTGATGATGCCGGCCTGGAGCGCCACCACTCCGGAACTGGTGGGCAAGGACGAACTGCCGGCG
GCGGTGGCGCTGTCCAGTGTCGGGGTCAACCTGGCGCGGGCGGTCGGACCGGCCATCGCCGGGGTGCTGGTG
AGCCTGGTCGGCCCCTGGCTGACCTTCGCCCTCAACGCCCTCTCCTTCTTCGCGGTGATCGCCGTGCTGCTG
GCCTGGAAACGCGAGGCCGTGCCCTCGGTGCTGCCGGCGGAACGCCTGTTCGGCGCCCTGCGCGCCGGCTGG
CGCTACAGCCGCAGCTCGAGGCCGCTGCAATCGGTGTTGGTGCGCGCGGTGGCGTTCTTCCTCGGCGCCAGC
GCCGGCATGTCGCTGCTGCCCCTGATCGTGCGCGGCGAACTGCATGGCAACGCCATGGACTTCGGCCTGCTG
CTGGGCAGCGTCGGCGTCGGCGCGGTGCTCGGCGCCGCGTTCCTGCCGCGCCTGCGCGAACGCCTCGGCAGC
GACCGCCTGGTGCTGCTCTCCAGCGTGCTCTACGCACTGGTGCTGGTGGCCCTGGCGCTGCTGCGCAACCTC
TATTTGCTGGTGCCGGTGATGCTGCTCAGCGGCGCGGCATGGATCGCCGTGCTCTCCAGCCTGCAGGTCGCC
GCGCAGACCTCCGTGCCGGCCTGGGTCCGCGCCCGCGCGCTGGCGGTCTACATCCTGGTGTTCTTCGGCAGC
ATGGCCGCCGGCGGCGCCCTGTGGGGTCTGCTCGCCAGCCACCTGTCGATCACCTTCGCCCTGCTCTGCGCC
AGCGCCGCGCTGCTGTTCGGCCTGTTCGCGTCGCTGCGCTGCCGGCTGCCGGTCACCGAGGCCGAGGACCTC
GCGCCGTCGCTGCACTGGCCGGCACCACTGGTCGACGAAGAGGTGGACCAGGAACGCGGCCCGGTGATGGTC
ACCCTCGAATACGACATCGACCCGCAGGACGCCGCGGCATTCCAGGCGGCGATGGTCGAGGTGCGCGCCATG
CGTCGGCGCAACGGCGCGGTGTCCTGGGGGCTGGTCCAGGACAGCGGCAACCGTCGCCTGTGGCTGGAGTTC
TTCATCGACGAATCCTGGCTGGAGCACCTGCGCCACCACCAGCGGGTGACCCGCGGCGAGTTGCGGGTCGAG
GCCGCCGCCCGGCGCTTCCAGAGCGCCGGCGTGGAGGTGCGCATCCGCCATTACCTGCACGGCGCGGCCAGG
CCTTGA
Translation:
MTAPAASPWSPLRQATFRWLWLASIASNIGTWMHEVGAGWLMTSLSASPLNVALVQVAGSLPMFFLALPAGA
LADIVDKRRYLLGVQLWMALVATLLASLTLLQLTSVWLLLGLTLCMGIGTALMMPAWSATTPELVGKDELPA
AVALSSVGVNLARAVGPAIAGVLVSLVGPWLTFALNALSFFAVIAVLLAWKREAVPSVLPAERLFGALRAGW
RYSRSSRPLQSVLVRAVAFFLGASAGMSLLPLIVRGELHGNAMDFGLLLGSVGVGAVLGAAFLPRLRERLGS
DRLVLLSSVLYALVLVALALLRNLYLLVPVMLLSGAAWIAVLSSLQVAAQTSVPAWVRARALAVYILVFFGS
MAAGGALWGLLASHLSITFALLCASAALLFGLFASLRCRLPVTEAEDLAPSLHWPAPLVDEEVDQERGPVMV
TLEYDIDPQDAAAFQAAMVEVRAMRRRNGAVSWGLVQDSGNRRLWLEFFIDESWLEHLRHHQRVTRGELRVE
AAARRFQSAGVEVRIRHYLHGAARP*
AnnotationID:721GeneID:712
AnnotatorUID: diggins
Modification Date/Time: 2004-12-09 07:07:38
Gene Name:
Confidence Code:3
GeneProduct:putative MFS transporter
Cell Localization:()
Synonyms:tetV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70816.1|AE016725_9 (AE016793) transporter, putative [Pseudomonas putida KT2440]
          Length = 532

 Score =  727 bits (1876), Expect = 0.0
 Identities = 362/525 (68%), Positives = 433/525 (82%)

>gb|AAM41454.1| (AE012324) MFS transporter [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 543

 Score =  474 bits (1220), Expect = e-133
 Identities = 253/520 (48%), Positives = 342/520 (65%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18569




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36329




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:712_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:712
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1223
                           PA2701_tr
                           translation of PA2701
                           529
                           99.43
                           99.62
                           0
                           2642.0
     

     
     
46733
                           gb|AAG06089.1|AE004698_5
                           (AE004698) probable MFS transporter [Pseudomonas aeruginosa PAO1]
                           529
                           99.43
                           99.62
                           0
                           2642.0
     

     
     
46734
                           gb|AAN70816.1|AE016725_9
                           (AE016793) transporter, putative [Pseudomonas putida KT2440]
                           532
                           68.04
                           81.39
                           3
                           1874.0
     

     
     
46735
                           gb|AAM41454.1|
                           (AE012324) MFS transporter [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           543
                           47.51
                           64.08
                           14
                           1221.0
     

     
     
46736
                           gb|AAM37014.1|
                           (AE011853) MFS transporter [Xanthomonas axonopodis pv. citri str. 306]
                           542
                           47.41
                           63.65
                           13
                           1220.0
     

     






      

          
GC ORFID: 43714How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2701Glimmer Score: 

          
Start: 2427122Stop: 2428711

          
Length: 1590


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2701 translation of PA2701Homolog Bit Score 1022.0

          
Other Homologs:  t_PA2701 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGCACCCGCCGCCTCACCCTGGAGTCCCCTGCGCCAAGCCACCTTCCGCTGGCTATGGCTGGCCAGC 
ATCGCCTCGAACATCGGCACCTGGATGCACGAGGTGGGCGCCGGCTGGCTGATGACCTCGCTCTCCGCCAGC 
CCGCTGAACGTGGCCCTGGTGCAGGTCGCCGGATCGCTGCCGATGTTCTTCCTGGCCCTGCCGGCCGGCGCC 
CTCGCCGATATCGTCGACAAGCGCCGCTACCTGCTCGGCGTGCAATTGTGGATGGCCTTGGTGGCCACCCTG 
CTGGCCAGCCTCACCCTGCTCCAGTTGACCAGCGTCTGGCTGCTGCTCGGCCTGACCCTGTGCATGGGCATC 
GGCACCGCGCTGATGATGCCGGCCTGGAGCGCCACCACTCCGGAACTGGTGGGCAAGGACGAACTGCCGGCG 
GCGGTGGCGCTGTCCAGTGTCGGGGTCAACCTGGCGCGGGCGGTCGGACCGGCCATCGCCGGGGTGCTGGTG 
AGCCTGGTCGGCCCCTGGCTGACCTTCGCCCTCAACGCCCTCTCCTTCTTCGCGGTGATCGCCGTGCTGCTG 
GCCTGGAAACGCGAGGCCGTGCCCTCGGTGCTGCCGGCGGAACGCCTGTTCGGCGCCCTGCGCGCCGGCTGG 
CGCTACAGCCGCAGCTCGAGGCCGCTGCAATCGGTGTTGGTGCGCGCGGTGGCGTTCTTCCTCGGCGCCAGC 
GCCGGCATGTCGCTGCTGCCCCTGATCGTGCGCGGCGAACTGCATGGCAACGCCATGGACTTCGGCCTGCTG 
CTGGGCAGCGTCGGCGTCGGCGCGGTGCTCGGCGCCGCGTTCCTGCCGCGCCTGCGCGAACGCCTCGGCAGC 
GACCGCCTGGTGCTGCTCTCCAGCGTGCTCTACGCACTGGTGCTGGTGGCCCTGGCGCTGCTGCGCAACCTC 
TATTTGCTGGTGCCGGTGATGCTGCTCAGCGGCGCGGCATGGATCGCCGTGCTCTCCAGCCTGCAGGTCGCC 
GCGCAGACCTCCGTGCCGGCCTGGGTCCGCGCCCGCGCGCTGGCGGTCTACATCCTGGTGTTCTTCGGCAGC 
ATGGCCGCCGGCGGCGCCCTGTGGGGTCTGCTCGCCAGCCACCTGTCGATCACCTTCGCCCTGCTCTGCGCC 
AGCGCCGCGCTGCTGTTCGGCCTGTTCGCGTCGCTGCGCTGCCGGCTGCCGGTCACCGAGGCCGAGGACCTC 
GCGCCGTCGCTGCACTGGCCGGCACCACTGGTCGACGAAGAGGTGGACCAGGAACGCGGCCCGGTGATGGTC 
ACCCTCGAATACGACATCGACCCGCAGGACGCCGCGGCATTCCAGGCGGCGATGGTCGAGGTGCGCGCCATG 
CGTCGGCGCAACGGCGCGGTGTCCTGGGGGCTGGTCCAGGACAGCGGCAACCGTCGCCTGTGGCTGGAGTTC 
TTCATCGACGAATCCTGGCTGGAGCACCTGCGCCACCACCAGCGGGTGACCCGCGGCGAGTTGCGGGTCGAG 
GCCGCCGCCCGGCGCTTCCAGAGCGCCGGCGTGGAGGTGCGCATCCGCCATTACCTGCACGGCGCGGCCAGG 
CCTTGA