ViewGene
Locus Name:
GeneID:
Location:

GeneID:711
TrivialName: PA14_24550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24550
PAO1 Ortholog Locus:PA3059
Sequence Length:1524
Protein Length:507
Start: 2144768
Stop: 2146291
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06447.1|AE004730_11 (AE004730) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 506/507 (99%), Positives = 506/507 (99%)
Sequence:
ATGACCGAACACACCGCTCCGACGGCGCCCGTCGCCGATGTCTGCCTGCTGCTGGAGGGCACCTGGCCCTAT
GTCCGCGGCGGCGTCTCCAGCTGGGTCAACCAGTTGATCCTCGGTCTCCCCGACCTGACCTTCTCGGTGTTC
TTCATCGGCGGCCAGAAGGATGCCTACGGCAAGCGCCACTACCCGATCCCGGACAATGTGCTGCACATCGAG
GAACACTTCCTGGAAACCGCCTGGAGTTCGCCGAACCCGCAGACGCGACAGGGCAGTAGCGAGACCGAAAAG
GCGTTGCGCGATCTGCACCGTTTCTTCCACTACCCGGAGACGCCGGACGTGGAGGAGGGCGACGCGCTGCTC
GACCTGCTCGCCGAGGGCCGCATCGGCCGCGAGGACTTTCTCCACAGCAAGGCCAGCTGGGAGGCGATCACC
GCAGGCTACGAGCGCTATTGCACCGATCCGTCCTTCGTCAATTACTTCTGGACCCTGCGCTCGATGCAGGCG
CCGGTGTTCATGCTCGCCGAGGCGGCCCGGCGGATGCCGCGGGCGCGCATGCTGCACTCGATCTCCACCGGC
TACGCCGGCCTGCTGGGCTGCATCCTGCAACGTCGCTGGGGCTGCCGCTACCTGCTCAGCGAGCACGGCATC
TACACCAAGGAGCGCAAGATCGACCTGGCCCAGGCCAACTGGATCGCGGAGAACCCCGACGAGCAGCTGAGT
ACCGGACTGGATGCCGAGGTCAGCTACATCCGTCGCTTGTGGATCCGCTTCTTCGAGCGTGTCGGCCTGCTC
ACCTATCGCGCCGCCAATCCGATCGTCGCCCTCTACGAAGGCAACCGCCAGCGCCAGGTACTCGATGGCGCC
GAGCCACGGCGCACCCGGGTGATCCCCAACGGCATCGACCTCGATGCCTGGGCCGGCGCCCTCGAACGGCGG
CCGCCGGGGATTCCGCCGGTGGTCGGGCTGGTCGGCCGGGTAGTGCCGATCAAGGACGTGAAGACCTTCATC
CGCGCCATGCGCGGGGTGGTCAGCGCGATGCCGGAGGCGGAGGGCTGGATCGTCGGTCCGGAGGAGGAAGAC
CCGGACTATGCCAGCGAATGCCGCAGCCTGGTGGCCAGCCTCGGCCTGCAGGACAAGGTGAAGTTCCTCGGT
TTCCGTCGGATCGGCGAGGTCCTGCCGCAACTCGGCCTGATGGTCCTCACCTCGATCAGCGAAGCGCAGCCG
CTGGTGATCCTCGAAGCCTGGGCTGCCGGCGCCCCGGTGGTGAGCAGCGACGTCGGCTCCTGCCGCGAACTG
ATCGAAGGCGCCGACGCCGAAGATCGCGCCCTGGGCCGCGCCGGGGAGGTGGTGGCGATCGCCGACCCGCAG
GCCACTTCGCGGGCGATCCTCGCCCTGCTGCGCAATCCGCAGCGCTGGCAGGCGGCCCAGGCGGTCGGCCTG
CAACGGGTCGAACGCTACTACACCGAGGCGCTGATGCTCGGACGTTACCGCGGGCTGTACCGCGAAGCCACG
GAGATTGCATGA
Translation:
MTEHTAPTAPVADVCLLLEGTWPYVRGGVSSWVNQLILGLPDLTFSVFFIGGQKDAYGKRHYPIPDNVLHIE
EHFLETAWSSPNPQTRQGSSETEKALRDLHRFFHYPETPDVEEGDALLDLLAEGRIGREDFLHSKASWEAIT
AGYERYCTDPSFVNYFWTLRSMQAPVFMLAEAARRMPRARMLHSISTGYAGLLGCILQRRWGCRYLLSEHGI
YTKERKIDLAQANWIAENPDEQLSTGLDAEVSYIRRLWIRFFERVGLLTYRAANPIVALYEGNRQRQVLDGA
EPRRTRVIPNGIDLDAWAGALERRPPGIPPVVGLVGRVVPIKDVKTFIRAMRGVVSAMPEAEGWIVGPEEED
PDYASECRSLVASLGLQDKVKFLGFRRIGEVLPQLGLMVLTSISEAQPLVILEAWAAGAPVVSSDVGSCREL
IEGADAEDRALGRAGEVVAIADPQATSRAILALLRNPQRWQAAQAVGLQRVERYYTEALMLGRYRGLYREAT
EIA*
AnnotationID:720GeneID:711
AnnotatorUID: danlee
Modification Date/Time: 2006-02-02 12:12:25
Gene Name:pelF
Confidence Code:3
GeneProduct:putative glycosyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00534,COG0438
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAK78710.1|AE007588_8 (AE007588) Glycosyltransferases I (lipopolysaccharide biosynthesis
           protein-related protein) [Clostridium acetobutylicum]
          Length = 471

 Score =  246 bits (628), Expect = 2e-64
 Identities = 149/496 (30%), Positives = 259/496 (52%), Gaps = 39/496 (7%)






 
Structural Features:
pfam00534, Glycos_transf_1, Glycosyl transferases group 1. 
CD-Length = 172 residues,  85.5% aligned
Score = 91.9 bits (228), Expect = 2e-19
Identities = 49/159 (30%), Positives = 78/159 (49%), Gaps = 16/159 (10%)

COG0438, RfaG, Glycosyltransferase 
[Cell envelope biogenesis, outer membrane]
CD-Length = 381 residues,  86.4% aligned
Score =  116 bits (289), Expect = 8e-27






   
Genomic Context:
Part of pelABCDEFG cluster involved in biofilm matrix formation in P. aeruginosa PA14 and ZK2870.






   
Comment:


















    ReferenceID:1425




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18567




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32446




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:711_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:711
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1222
                           PA3059_tr
                           translation of PA3059
                           507
                           99.80
                           99.80
                           0
                           2644.0
     

     
     
46731
                           gb|AAG06447.1|AE004730_11
                           (AE004730) hypothetical protein PA3059 [Pseudomonas aeruginosa PAO1]
                           507
                           99.80
                           99.80
                           0
                           2644.0
     

     
     
46732
                           emb|CAD15978.1|
                           (AL646069) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           539
                           50.64
                           66.23
                           42
                           1371.0
     

     






      

          
GC ORFID: 43713How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3059Glimmer Score: 

          
Start: 2809161Stop: 2807638

          
Length: 1524


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3059 translation of PA3059Homolog Bit Score 1023.0

          
Other Homologs:  t_PA3059 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGAACACACCGCTCCGACGGCGCCCGTCGCCGATGTCTGCCTGCTGCTGGAGGGCACCTGGCCCTAT 
GTCCGCGGCGGCGTCTCCAGCTGGGTCAACCAGTTGATCCTCGGTCTCCCCGACCTGACCTTCTCGGTGTTC 
TTCATCGGCGGCCAGAAGGATGCCTACGGCAAGCGCCACTACCCGATCCCGGACAATGTGCTGCACATCGAG 
GAACACTTCCTGGAAACCGCCTGGAGTTCGCCGAACCCGCAGACGCGACAGGGCAGTAGCGAGACCGAAAAG 
GCGTTGCGCGATCTGCACCGTTTCTTCCACTACCCGGAGACGCCGGACGTGGAGGAGGGCGACGCGCTGCTC 
GACCTGCTCGCCGAGGGCCGCATCGGCCGCGAGGACTTTCTCCACAGCAAGGCCAGCTGGGAGGCGATCACC 
GCAGGCTACGAGCGCTATTGCACCGATCCGTCCTTCGTCAATTACTTCTGGACCCTGCGCTCGATGCAGGCG 
CCGGTGTTCATGCTCGCCGAGGCGGCCCGGCGGATGCCGCGGGCGCGCATGCTGCACTCGATCTCCACCGGC 
TACGCCGGCCTGCTGGGCTGCATCCTGCAACGTCGCTGGGGCTGCCGCTACCTGCTCAGCGAGCACGGCATC 
TACACCAAGGAGCGCAAGATCGACCTGGCCCAGGCCAACTGGATCGCGGAGAACCCCGACGAGCAGCTGAGT 
ACCGGACTGGATGCCGAGGTCAGCTACATCCGTCGCTTGTGGATCCGCTTCTTCGAGCGTGTCGGCCTGCTC 
ACCTATCGCGCCGCCAATCCGATCGTCGCCCTCTACGAAGGCAACCGCCAGCGCCAGGTACTCGATGGCGCC 
GAGCCACGGCGCACCCGGGTGATCCCCAACGGCATCGACCTCGATGCCTGGGCCGGCGCCCTCGAACGGCGG 
CCGCCGGGGATTCCGCCGGTGGTCGGGCTGGTCGGCCGGGTAGTGCCGATCAAGGACGTGAAGACCTTCATC 
CGCGCCATGCGCGGGGTGGTCAGCGCGATGCCGGAGGCGGAGGGCTGGATCGTCGGTCCGGAGGAGGAAGAC 
CCGGACTATGCCAGCGAATGCCGCAGCCTGGTGGCCAGCCTCGGCCTGCAGGACAAGGTGAAGTTCCTCGGT 
TTCCGTCGGATCGGCGAGGTCCTGCCGCAACTCGGCCTGATGGTCCTCACCTCGATCAGCGAAGCGCAGCCG 
CTGGTGATCCTCGAAGCCTGGGCTGCCGGCGCCCCGGTGGTGAGCAGCGACGTCGGCTCCTGCCGCGAACTG 
ATCGAAGGCGCCGACGCCGAAGATCGCGCCCTGGGCCGCGCCGGGGAGGTGGTGGCGATCGCCGACCCGCAG 
GCCACTTCGCGGGCGATCCTCGCCCTGCTGCGCAATCCGCAGCGCTGGCAGGCGGCCCAGGCGGTCGGCCTG 
CAACGGGTCGAACGCTACTACACCGAGGCGCTGATGCTCGGACGTTACCGCGGGCTGTACCGCGAAGCCACG 
GAGATTGCATGA