ViewGene
Locus Name:
GeneID:
Location:

GeneID:7103
TrivialName: PA14_04350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04350
PAO1 Ortholog Locus:
Sequence Length:468
Protein Length:155
Start: 389680
Stop: 390147
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK24860.1| (AE005954) hypothetical protein [Caulobacter crescentus CB15]
Identities = 72/155 (46%), Positives = 101/155 (65%)
Sequence:
ATGAACCTTTACCTACTGCTGAAGACCCTGCATATCCTTTCCTCGACCATTCTTTTCGGCACCGGCCTGGGG
TCGGCCTACTACGCCCTGCGTGCCTGGCGCAGCGGGCAGTTGCCGGTGATCGCAGTGACCTTCCGCCACCTG
GTCACCGCCGACTGGCTGTTCATCGCCACCACCGCGGTGTTCCAGCCGCTCAGCGGCCTGGCCATGGTGCAT
GTCGCCGGCTGGTCGCTGGCCCAGGGCTGGTTGCTGTGGAGCCTGGGCCTCTACGTGTTCGCCGGGCTCTGC
TGGCTACCGGTGGTGTGGTTGCAGATCCGCGTACGCGACATGGCCGAGGCTGCCTTGCGCGAGGCGCGGCCC
ATCGAACCGCTGGCGTACCGCTACATGAACGCCTGGTTCATCCTCGGCTGGCCGGCCTTCATCGCCTTCATG
GTCATCTTCTACCTGATGGTCAACAAGCCGGTCTGA
Translation:
MNLYLLLKTLHILSSTILFGTGLGSAYYALRAWRSGQLPVIAVTFRHLVTADWLFIATTAVFQPLSGLAMVH
VAGWSLAQGWLLWSLGLYVFAGLCWLPVVWLQIRVRDMAEAALREARPIEPLAYRYMNAWFILGWPAFIAFM
VIFYLMVNKPV*
AnnotationID:7103GeneID:7103
AnnotatorUID: danlee
Modification Date/Time: 2006-05-03 15:03:24
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5528
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5528,Predicted integral membrane protein






   
Genomic Context:






   
Comment:
ORF present but not annotated in PAO1.


















    ReferenceID:13865




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31278




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33666




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7103_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7103
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203114
                           gb|AAK24860.1|
                           (AE005954) hypothetical protein [Caulobacter crescentus CB15]
                           156
                           46.15
                           64.74
                           1
                           378.0
     

     
     
203115
                           emb|CAC48800.1|
                           (AL603643) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           158
                           43.03
                           63.29
                           4
                           364.0
     

     






      

          
GC ORFID: 50105How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6191022Stop: 6191489

          
Length: 468


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAACCTTTACCTACTGCTGAAGACCCTGCATATCCTTTCCTCGACCATTCTTTTCGGCACCGGCCTGGGG 
TCGGCCTACTACGCCCTGCGTGCCTGGCGCAGCGGGCAGTTGCCGGTGATCGCAGTGACCTTCCGCCACCTG 
GTCACCGCCGACTGGCTGTTCATCGCCACCACCGCGGTGTTCCAGCCGCTCAGCGGCCTGGCCATGGTGCAT 
GTCGCCGGCTGGTCGCTGGCCCAGGGCTGGTTGCTGTGGAGCCTGGGCCTCTACGTGTTCGCCGGGCTCTGC 
TGGCTACCGGTGGTGTGGTTGCAGATCCGCGTACGCGACATGGCCGAGGCTGCCTTGCGCGAGGCGCGGCCC 
ATCGAACCGCTGGCGTACCGCTACATGAACGCCTGGTTCATCCTCGGCTGGCCGGCCTTCATCGCCTTCATG 
GTCATCTTCTACCTGATGGTCAACAAGCCGGTCTGA