ViewGene
Locus Name:
GeneID:
Location:

GeneID:710
TrivialName: PA14_60020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60020
PAO1 Ortholog Locus:
Sequence Length:1512
Protein Length:503
Start: 5344464
Stop: 5345975
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84141.1| (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
Identities = 502/503 (99%), Positives = 503/503 (100%)
Sequence:
ATGACCTTCATGACCAATGACTACCTGGAGTATTACCTCACCCTCCTCGGCTGGATCATCAACAACGGGATC
TGGAACATGATCTCGGATACTGGCCTGTTCGCGGTGCCGTTCGCGGCCATCGTGATGCGCGAATGGCTGAAA
GTTCGTGGGGAAGGCGCCGACGAGGGCAACAAGGGAGTGCTGTCTCTCGCCCGCATCGAGACGCATATCTAC
GTCGGCTACATCGTGGTCGCCCTGGCGGGGATCCCGGTCGTCAACGTGAGCTTCGACACCATCGAGTTCGAC
CAGACTCGCGCCCAGCAGTGCCAATACAATCTGCCGGCACCGGCGGACACCGGCTGGTCGAGCTCCTTCAGC
AGCCTGGCCGGCAAGAGTGCGCAGATGCCGCTCTGGTGGGCGATGATGCACGCCCTGTCCAAGGGCTTCACC
AGCGGCGCCATCGCGGCCATTCCGTGCGGCACGGATCTGCGGCAGATGCGAATGGAAGTGGACAACACGCGC
GTGAACAATCCGCTGCTGGCACAAGAAATCGCTGATTTTTCCAGAGACTGCTACGGGCCTTCCCGTGCGCGG
CTGTTCATGCGGCAACCCGACCTGGGCTCCGTCGCCGAGGACAACAAGGCGTTGCAAGACCTGAACTGGATC
GGCTCCCGATTCTTGTTGAACACCCCGGGGTACTACGACACCGACTACTCGAAGAGTCCCCGTCAGTCGTGG
CCCTACAACGCCACCCGCGATGCCGGCCTGCCTCAGGTGGGCGGTGGTGGCGGCTACCCAACCTGCAAGCAG
TGGTGGGCTGACTCAGGGATCGGCTTGCGTGATCGGATCAAGGACCAGGTGGATCCGGACCTGATGACCAGC
TTCCTCAAGTGGGCGAAATGGTTGAACCAGGACGAGGTGACCGAGGCTGTCATTCGCCAGGTGATCTCACCC
TCCAGCCAGGTCAAGGGTAACGTCTACACCGATTACGGCGGGCAGGTGGGCGGCACCGTCTGGAACGGCATC
GCGAGAACCGCAGGAACCTTCGGCGTTGCGCTGGGCAGCCTGGCCTACTTCCCGGCGATGGATATGGTCCGC
CAGGCACTGCCGATGGTGATGTCGTTCCTGAAGATGGCAATGGTCATCTGCATTCCGATGGTCCTGGTCATC
GGCACCTATCAACTGAAAGTTGCCATGACGATGACGGTCGTCTTCTTTGCGATGATGTTCGTCGACTTCTGG
TTTCAGTTAGCCAGATATATCGACAGCACGATACTTGATGCTTTCTATGGTTCGGGATCACCACATCTTTCA
TTCAACCCAGTCATGGGGCTGAATACGGCTACTCAAGATGCGATCTTGAACTTCGTTATGGGTTCTATGTTC
ATTGTTTTACCACTACTGTGGATGACAGCGATCGGCTGGTCCGGAATTCAAGCAGGGTCTGTTCTGAACGGA
TTGAGCAGAGGGACTGAAGGAGTTCAAGCCGCCGGCAAGGAAGCAGGAAATAGAGTTAAAAACGCAGTTTGA
Translation:
MTFMTNDYLEYYLTLLGWIINNGIWNMISDTGLFAVPFAAIVMREWLKVRGEGADEGNKGVLSLARIETHIY
VGYIVVALAGIPVVNVSFDTIEFDQTRAQQCQYNLPAPADTGWSSSFSSLAGKSAQMPLWWAMMHALSKGFT
SGAIAAIPCGTDLRQMRMEVDNTRVNNPLLAQEIADFSRDCYGPSRARLFMRQPDLGSVAEDNKALQDLNWI
GSRFLLNTPGYYDTDYSKSPRQSWPYNATRDAGLPQVGGGGGYPTCKQWWADSGIGLRDRIKDQVDPDLMTS
FLKWAKWLNQDEVTEAVIRQVISPSSQVKGNVYTDYGGQVGGTVWNGIARTAGTFGVALGSLAYFPAMDMVR
QALPMVMSFLKMAMVICIPMVLVIGTYQLKVAMTMTVVFFAMMFVDFWFQLARYIDSTILDAFYGSGSPHLS
FNPVMGLNTATQDAILNFVMGSMFIVLPLLWMTAIGWSGIQAGSVLNGLSRGTEGVQAAGKEAGNRVKNAV*
AnnotationID:719GeneID:710
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 21:09:27
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:1423




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18565




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:710
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
46719
                           gb|AAP84141.1|
                           (AY273869) conserved hypothetical protein [Pseudomonas aeruginosa]
                           503
                           99.80
                           99.99
                           0
                           2650.0
     

     
     
46720
                           gb|AAP94684.1|
                           (AY258138) conserved hypothetical protein [Pseudomonas aeruginosa]
                           503
                           98.01
                           99.00
                           0
                           2612.0
     

     
     
46721
                           gb|AAO63154.1|
                           (AY222611) STY4579 [Pseudomonas syringae]
                           515
                           57.66
                           74.36
                           17
                           1648.0
     

     
     
46722
                           gb|AAN62133.1|AF440523_40
                           (AF440523) hypothetical protein [Pseudomonas aeruginosa]
                           520
                           57.11
                           74.42
                           22
                           1623.0
     

     
     
46725
                           emb|CAE92904.1|
                           (AJ617740) hypothetical protein [Pseudomonas putida]
                           510
                           56.07
                           74.70
                           12
                           1581.0
     

     






      

          
GC ORFID: 43712How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL014Glimmer Score: 

          
Start: 4608143Stop: 4609654

          
Length: 1512


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_RL014 503 Homolog: XAC2186 / Hypothetical protein / X.axonopodis pv. citri / 306 (AAM37039) translation of RL014Homolog Bit Score 1025.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1659 (ORF: BLASTX 637.0), t_RL014 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTTCATGACCAATGACTACCTGGAGTATTACCTCACCCTCCTCGGCTGGATCATCAACAACGGGATC 
TGGAACATGATCTCGGATACTGGCCTGTTCGCGGTGCCGTTCGCGGCCATCGTGATGCGCGAATGGCTGAAA 
GTTCGTGGGGAAGGCGCCGACGAGGGCAACAAGGGAGTGCTGTCTCTCGCCCGCATCGAGACGCATATCTAC 
GTCGGCTACATCGTGGTCGCCCTGGCGGGGATCCCGGTCGTCAACGTGAGCTTCGACACCATCGAGTTCGAC 
CAGACTCGCGCCCAGCAGTGCCAATACAATCTGCCGGCACCGGCGGACACCGGCTGGTCGAGCTCCTTCAGC 
AGCCTGGCCGGCAAGAGTGCGCAGATGCCGCTCTGGTGGGCGATGATGCACGCCCTGTCCAAGGGCTTCACC 
AGCGGCGCCATCGCGGCCATTCCGTGCGGCACGGATCTGCGGCAGATGCGAATGGAAGTGGACAACACGCGC 
GTGAACAATCCGCTGCTGGCACAAGAAATCGCTGATTTTTCCAGAGACTGCTACGGGCCTTCCCGTGCGCGG 
CTGTTCATGCGGCAACCCGACCTGGGCTCCGTCGCCGAGGACAACAAGGCGTTGCAAGACCTGAACTGGATC 
GGCTCCCGATTCTTGTTGAACACCCCGGGGTACTACGACACCGACTACTCGAAGAGTCCCCGTCAGTCGTGG 
CCCTACAACGCCACCCGCGATGCCGGCCTGCCTCAGGTGGGCGGTGGTGGCGGCTACCCAACCTGCAAGCAG 
TGGTGGGCTGACTCAGGGATCGGCTTGCGTGATCGGATCAAGGACCAGGTGGATCCGGACCTGATGACCAGC 
TTCCTCAAGTGGGCGAAATGGTTGAACCAGGACGAGGTGACCGAGGCTGTCATTCGCCAGGTGATCTCACCC 
TCCAGCCAGGTCAAGGGTAACGTCTACACCGATTACGGCGGGCAGGTGGGCGGCACCGTCTGGAACGGCATC 
GCGAGAACCGCAGGAACCTTCGGCGTTGCGCTGGGCAGCCTGGCCTACTTCCCGGCGATGGATATGGTCCGC 
CAGGCACTGCCGATGGTGATGTCGTTCCTGAAGATGGCAATGGTCATCTGCATTCCGATGGTCCTGGTCATC 
GGCACCTATCAACTGAAAGTTGCCATGACGATGACGGTCGTCTTCTTTGCGATGATGTTCGTCGACTTCTGG 
TTTCAGTTAGCCAGATATATCGACAGCACGATACTTGATGCTTTCTATGGTTCGGGATCACCACATCTTTCA 
TTCAACCCAGTCATGGGGCTGAATACGGCTACTCAAGATGCGATCTTGAACTTCGTTATGGGTTCTATGTTC 
ATTGTTTTACCACTACTGTGGATGACAGCGATCGGCTGGTCCGGAATTCAAGCAGGGTCTGTTCTGAACGGA 
TTGAGCAGAGGGACTGAAGGAGTTCAAGCCGCCGGCAAGGAAGCAGGAAATAGAGTTAAAAACGCAGTTTGA