ViewGene
Locus Name:
GeneID:
Location:

GeneID:7096
TrivialName: PA14_04010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04010
PAO1 Ortholog Locus:
Sequence Length:504
Protein Length:167
Start: 362480
Stop: 361977
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAK01494.1| (AF241171) hypothetical protein [Pseudomonas aeruginosa]
Identities = 82/166 (49%), Positives = 119/166 (71%)
Sequence:
ATGTCCCTACGTCCCACCCTCGCCCTGCTCGCCCTCGTCAGCCTGCCGCTGATGGCCGCCCAGAACGACCCT
CAGCCCAGCAGCAAGGAACTGATGAAGGAGCACCAGGCGCAGATCCAGAACGACCTGGCCGACGTCGACTAC
AAGCGCAAGCGCATCGTCGAGGCCAACATGAACCTCACCGACCAGGAAGGCGAGAAGTTCTGGCCGATCTAC
AACACCTACCGCACCGAGTCGGACAAGCTCAGCAAGGAAACCCTCAAGCTCCTGCTCGACTACGCCCAGGCC
TACAACAGCGGCAACGTCAGCGACGACCAGGCGAGCACGCTGATCGAGCGTGTCGACGACCTCCAGGAGGAC
CGCCTGGAACTGCGCGACAAGTACGTCAAGCGCATCGCCAAGAACGTCTCGCCCAAGCGCGCCATGCGCTTC
CTGCAGATCGAGATCCAGCTCGACGCCATCGCCACCCTGGAGATCGGCCGTCAGGTACCGCTGGTCGAGTAA
Translation:
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIY
NTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASTLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRF
LQIEIQLDAIATLEIGRQVPLVE*
AnnotationID:7096GeneID:7096
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 07:07:48
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13852




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31265




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7096
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203113
                           gb|AAK01494.1|
                           (AF241171) hypothetical protein [Pseudomonas aeruginosa]
                           167
                           49.10
                           71.25
                           0
                           427.0
     

     






      

          
GC ORFID: 50098How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6163822Stop: 6163319

          
Length: 504


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGTCCCTACGTCCCACCCTCGCCCTGCTCGCCCTCGTCAGCCTGCCGCTGATGGCCGCCCAGAACGACCCT 
CAGCCCAGCAGCAAGGAACTGATGAAGGAGCACCAGGCGCAGATCCAGAACGACCTGGCCGACGTCGACTAC 
AAGCGCAAGCGCATCGTCGAGGCCAACATGAACCTCACCGACCAGGAAGGCGAGAAGTTCTGGCCGATCTAC 
AACACCTACCGCACCGAGTCGGACAAGCTCAGCAAGGAAACCCTCAAGCTCCTGCTCGACTACGCCCAGGCC 
TACAACAGCGGCAACGTCAGCGACGACCAGGCGAGCACGCTGATCGAGCGTGTCGACGACCTCCAGGAGGAC 
CGCCTGGAACTGCGCGACAAGTACGTCAAGCGCATCGCCAAGAACGTCTCGCCCAAGCGCGCCATGCGCTTC 
CTGCAGATCGAGATCCAGCTCGACGCCATCGCCACCCTGGAGATCGGCCGTCAGGTACCGCTGGTCGAGTAA