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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG08760.1|AE004950_3 (AE004950) choline transporter BetT [Pseudomonas aeruginosa PAO1]
Identities = 512/516 (99%), Positives = 513/516 (99%)
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Sequence:
GTGTTCTTCGGCTCGACCGCACTGATCCTGGTTCTGACCGCCGCCCTCATCCTCTATCCCGACAGCGCCGGA
GCCTTGCTCGGCCGCATCCAGGCGTGGCTGTCGCACAGCTTCGGCTGGTACTACATGCTGGCCATCGGCGCC
TACCTGTTCTTCGTCGCCTGGGTGGCCTTCTCGCGCTTCGGCACCCTCAAGCTCGGCGAGGAGCATGAAAAG
CCGGACTTCAGCTACGGCGCCTGGGCCGGCATGCTGTTCTCCTCCGGGATCGGCATCTCGCTGCTCTACTTC
GCCGCATCCGAGCCGATCGACCACCTCTACCACCCGCCCGAAGGCGTTCCCGGCAGCCCTCAGGCGGCGCGC
CAGGCGCTGCAACTGACCTTCCTCCACTGGGGCCTGCACGGTTGGGCGATCTATGCCCTGGTCGGCCTCGCC
GTCGGCTATTTCGCCTACCGCCATCGCCAGCCGCTGGCGTTGCGCTCGGCGCTCTATCCGATCCTCGGCGAG
CGCTGGGTGAAAGGCGCCGCGGGCCACGCGGTGGATTGCTTCGGCATCTTCGTCACCCTTCTCGGGCTGGTG
ACCAACCTGGGCATCGGCGCCTTGCAGGTGTCGTCCGGTCTCGAGTACCTGACCGGCATGCCGCACAGCAAA
GGCACCCTGCTGGCGGTGATCCTCGTGATGAGCCTGGTCGCCACCCTGGCGGCGGTCTCCGGTATCGAGAAA
GGCATCCGCCGGCTGTCCAACCTGAATATCGTGCTGTTCAGCTCGCTGCTGCTGTTCGTGCTGGTCTGCGGT
TCGACCCTGGAACTGCTCAACGGCTTCGTACAGAACCTCGGCGACTATCTCGACGGCCTGGTGCTGAAGACC
TTCGACCTCTACGTCTACACCGGTGCCGGCGCCGGCAAGAGCGAGGAATGGCTGGGCCTGTGGACCCTGTTC
TACTGGGCCTGGTGGATTTCCTGGGCGCCCTTCGTCGGTATGTTCATCGCCCGCATCTCCCGTGGTCGCAGC
GTGCGCGAACTGGTCTGCGGGGTGCTGCTGATCCCGCTGGGCTTCACCCTGGCCTGGCTGTCGGTATTCGGC
AACAGCGCCCTGGACCTGGTGATGAACCACGGCGCGACCGACCTGGGCAAGGCCGCGCTGGAACAGCCGTCG
ATGTCGATCTACCTGCTGCTGGAACACTATCCGCTGTCGAAGATCGTCATCGGCCTGTCGATCTTCGTCGGC
TTCGTGCTGTTCCTCACCCCGGCGGATTCCGGCTCGGTGATGCTGGCCAATCTCTCGCGCAGCGGCGGCGAG
CTGGACGAGGACGCGCCGAACTGGCTGCGCATCCTCTGGTCGGCCGTCGTCACGCTAGTCACCATCGGCCTG
CTGTTCGCCGGCAACTTCACGGCGATGCAAACCGTCGTGGTGCTCGCCGGGCTACCGTTCTCGGCGGTGCTG
ATCCTGTTCATGTTCGGCCTGCACAAGGCCATGCGCGCCGACTACGAGGCCCAGGTCGGCGACCGCCGCACC
TACCAGCCAGTGCCGGCGCCAACCCAGCACCAGACCTGA |
Translation:
MFFGSTALILVLTAALILYPDSAGALLGRIQAWLSHSFGWYYMLAIGAYLFFVAWVAFSRFGTLKLGEEHEK
PDFSYGAWAGMLFSSGIGISLLYFAASEPIDHLYHPPEGVPGSPQAARQALQLTFLHWGLHGWAIYALVGLA
VGYFAYRHRQPLALRSALYPILGERWVKGAAGHAVDCFGIFVTLLGLVTNLGIGALQVSSGLEYLTGMPHSK
GTLLAVILVMSLVATLAAVSGIEKGIRRLSNLNIVLFSSLLLFVLVCGSTLELLNGFVQNLGDYLDGLVLKT
FDLYVYTGAGAGKSEEWLGLWTLFYWAWWISWAPFVGMFIARISRGRSVRELVCGVLLIPLGFTLAWLSVFG
NSALDLVMNHGATDLGKAALEQPSMSIYLLLEHYPLSKIVIGLSIFVGFVLFLTPADSGSVMLANLSRSGGE
LDEDAPNWLRILWSAVVTLVTIGLLFAGNFTAMQTVVVLAGLPFSAVLILFMFGLHKAMRADYEAQVGDRRT
YQPVPAPTQHQT* |
AnnotationID:717 | GeneID:708 |
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Modification Date/Time: |
2005-03-17 08:08:31 |
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GeneProduct: | choline/carnitine/betaine transporter family protein |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (27) Transport of small molecules |
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Alternate Gene Product Name: | |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | membrane protein |
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Homology: | >gb|AAN70626.1|AE016706_1 (AE016793) choline/carnitine/betaine transporter family protein
[Pseudomonas putida KT2440]
Length = 667
Score = 781 bits (2018), Expect = 0.0
Identities = 380/494 (76%), Positives = 438/494 (88%), Gaps = 1/494 (0%)
>gb|AAO58695.1| (AE016875) transporter, BCCT family [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 664
Score = 575 bits (1482), Expect = e-163
Identities = 267/508 (52%), Positives = 369/508 (72%), Gaps = 6/508 (1%)
>gb|AAM42672.1| (AE012458) high-affinity choline transport [Xanthomonas campestris
pv. campestris str. ATCC 33913]
Length = 659
Score = 529 bits (1362), Expect = e-149
Identities = 260/506 (51%), Positives = 355/506 (70%), Gaps = 11/506 (2%) |
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Structural Features: | COG1292, BetT, Choline-glycine betaine transporter
[Cell envelope biogenesis, outer membrane]
CD-Length = 537 residues, 94.0% aligned
Score = 532 bits (1371), Expect = 4e-152
Identities = 243/517 (47%), Positives = 332/517 (64%), Gaps = 13/517 (2%)
pfam02028, BCCT, BCCT family transporter.
CD-Length = 487 residues, 100.0% aligned
Score = 446 bits (1148), Expect = 3e-126
Identities = 219/494 (44%), Positives = 322/494 (65%), Gaps = 7/494 (1%) |
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