ViewGene

Locus Name:
GeneID:
Location:

GeneID:708
TrivialName: PA14_70980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70980
PAO1 Ortholog Locus:PA5375
Sequence Length:1551
Protein Length:516
Start: 6324563
Stop: 6326113
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08760.1|AE004950_3 (AE004950) choline transporter BetT [Pseudomonas aeruginosa PAO1]
Identities = 512/516 (99%), Positives = 513/516 (99%)
Sequence:
GTGTTCTTCGGCTCGACCGCACTGATCCTGGTTCTGACCGCCGCCCTCATCCTCTATCCCGACAGCGCCGGA
GCCTTGCTCGGCCGCATCCAGGCGTGGCTGTCGCACAGCTTCGGCTGGTACTACATGCTGGCCATCGGCGCC
TACCTGTTCTTCGTCGCCTGGGTGGCCTTCTCGCGCTTCGGCACCCTCAAGCTCGGCGAGGAGCATGAAAAG
CCGGACTTCAGCTACGGCGCCTGGGCCGGCATGCTGTTCTCCTCCGGGATCGGCATCTCGCTGCTCTACTTC
GCCGCATCCGAGCCGATCGACCACCTCTACCACCCGCCCGAAGGCGTTCCCGGCAGCCCTCAGGCGGCGCGC
CAGGCGCTGCAACTGACCTTCCTCCACTGGGGCCTGCACGGTTGGGCGATCTATGCCCTGGTCGGCCTCGCC
GTCGGCTATTTCGCCTACCGCCATCGCCAGCCGCTGGCGTTGCGCTCGGCGCTCTATCCGATCCTCGGCGAG
CGCTGGGTGAAAGGCGCCGCGGGCCACGCGGTGGATTGCTTCGGCATCTTCGTCACCCTTCTCGGGCTGGTG
ACCAACCTGGGCATCGGCGCCTTGCAGGTGTCGTCCGGTCTCGAGTACCTGACCGGCATGCCGCACAGCAAA
GGCACCCTGCTGGCGGTGATCCTCGTGATGAGCCTGGTCGCCACCCTGGCGGCGGTCTCCGGTATCGAGAAA
GGCATCCGCCGGCTGTCCAACCTGAATATCGTGCTGTTCAGCTCGCTGCTGCTGTTCGTGCTGGTCTGCGGT
TCGACCCTGGAACTGCTCAACGGCTTCGTACAGAACCTCGGCGACTATCTCGACGGCCTGGTGCTGAAGACC
TTCGACCTCTACGTCTACACCGGTGCCGGCGCCGGCAAGAGCGAGGAATGGCTGGGCCTGTGGACCCTGTTC
TACTGGGCCTGGTGGATTTCCTGGGCGCCCTTCGTCGGTATGTTCATCGCCCGCATCTCCCGTGGTCGCAGC
GTGCGCGAACTGGTCTGCGGGGTGCTGCTGATCCCGCTGGGCTTCACCCTGGCCTGGCTGTCGGTATTCGGC
AACAGCGCCCTGGACCTGGTGATGAACCACGGCGCGACCGACCTGGGCAAGGCCGCGCTGGAACAGCCGTCG
ATGTCGATCTACCTGCTGCTGGAACACTATCCGCTGTCGAAGATCGTCATCGGCCTGTCGATCTTCGTCGGC
TTCGTGCTGTTCCTCACCCCGGCGGATTCCGGCTCGGTGATGCTGGCCAATCTCTCGCGCAGCGGCGGCGAG
CTGGACGAGGACGCGCCGAACTGGCTGCGCATCCTCTGGTCGGCCGTCGTCACGCTAGTCACCATCGGCCTG
CTGTTCGCCGGCAACTTCACGGCGATGCAAACCGTCGTGGTGCTCGCCGGGCTACCGTTCTCGGCGGTGCTG
ATCCTGTTCATGTTCGGCCTGCACAAGGCCATGCGCGCCGACTACGAGGCCCAGGTCGGCGACCGCCGCACC
TACCAGCCAGTGCCGGCGCCAACCCAGCACCAGACCTGA
Translation:
MFFGSTALILVLTAALILYPDSAGALLGRIQAWLSHSFGWYYMLAIGAYLFFVAWVAFSRFGTLKLGEEHEK
PDFSYGAWAGMLFSSGIGISLLYFAASEPIDHLYHPPEGVPGSPQAARQALQLTFLHWGLHGWAIYALVGLA
VGYFAYRHRQPLALRSALYPILGERWVKGAAGHAVDCFGIFVTLLGLVTNLGIGALQVSSGLEYLTGMPHSK
GTLLAVILVMSLVATLAAVSGIEKGIRRLSNLNIVLFSSLLLFVLVCGSTLELLNGFVQNLGDYLDGLVLKT
FDLYVYTGAGAGKSEEWLGLWTLFYWAWWISWAPFVGMFIARISRGRSVRELVCGVLLIPLGFTLAWLSVFG
NSALDLVMNHGATDLGKAALEQPSMSIYLLLEHYPLSKIVIGLSIFVGFVLFLTPADSGSVMLANLSRSGGE
LDEDAPNWLRILWSAVVTLVTIGLLFAGNFTAMQTVVVLAGLPFSAVLILFMFGLHKAMRADYEAQVGDRRT
YQPVPAPTQHQT*
AnnotationID:717GeneID:708
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 08:08:31
Gene Name:betT1
Confidence Code:2
GeneProduct:choline/carnitine/betaine transporter family protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1292,pfam02028
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70626.1|AE016706_1 (AE016793) choline/carnitine/betaine transporter family protein
           [Pseudomonas putida KT2440]
          Length = 667

 Score =  781 bits (2018), Expect = 0.0
 Identities = 380/494 (76%), Positives = 438/494 (88%), Gaps = 1/494 (0%)

>gb|AAO58695.1| (AE016875) transporter, BCCT family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 664

 Score =  575 bits (1482), Expect = e-163
 Identities = 267/508 (52%), Positives = 369/508 (72%), Gaps = 6/508 (1%)

>gb|AAM42672.1| (AE012458) high-affinity choline transport [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
          Length = 659

 Score =  529 bits (1362), Expect = e-149
 Identities = 260/506 (51%), Positives = 355/506 (70%), Gaps = 11/506 (2%)
Structural Features:
COG1292, BetT, Choline-glycine betaine transporter 
[Cell envelope biogenesis, outer membrane]
CD-Length = 537 residues,  94.0% aligned
Score =  532 bits (1371), Expect = 4e-152
Identities = 243/517 (47%), Positives = 332/517 (64%), Gaps = 13/517 (2%)

pfam02028, BCCT, BCCT family transporter.
CD-Length = 487 residues, 100.0% aligned
Score =  446 bits (1148), Expect = 3e-126
Identities = 219/494 (44%), Positives = 322/494 (65%), Gaps = 7/494 (1%)
Genomic Context:
Comment:
ReferenceID:14203
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18561
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34726
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:708_cdd.html
URL:
ReferenceID:35664
Author/Investigator(s): Yura T, Mori H, Nagai H, Nagata T, Ishihama A, Fujita N, Isono K, Mizobuchi K, Nakata A.
Title: Systematic sequencing of the Escherichia coli genome: analysis of the 0-2.4 min region.
PubMed: 1630901
MedLine:
Source:
Nucleic Acids Res. 1992 Jul 11;20(13):3305-8.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1630901
ReferenceID:35665
Author/Investigator(s): Lamark T, Kaasen I, Eshoo MW, Falkenberg P, McDougall J, Strom AR.
Title: DNA sequence and analysis of the bet genes encoding the osmoregulatory choline-glycine betaine pathway of Escherichia coli.
PubMed: 1956285
MedLine:
Source:
Mol Microbiol. 1991 May;5(5):1049-64.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1956285
Homologs By Global Alignment
Gene ID:708

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1217 PA5375_tr translation of PA5375 516 99.22 99.41 0 2653.0
46505 gb|AAG08760.1|AE004950_3 (AE004950) choline transporter BetT [Pseudomonas aeruginosa PAO1] 516 99.03 99.41 0 2650.0
46506 gb|AAN70626.1|AE016706_1 (AE016793) choline/carnitine/betaine transporter family protein [Pseudomonas putida KT2440] 668 58.08 66.76 153 2020.0
46509 gb|AAG07320.1|AE004811_3 (AE004811) probable choline transporter [Pseudomonas aeruginosa PAO1] 660 41.96 56.51 151 1478.0
1218 PA3933_tr translation of PA3933 660 41.96 56.51 151 1478.0
GC ORFID: 43710How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5375Glimmer Score:
Start: 5588252Stop: 5589802
Length: 1551
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5375 translation of PA5375Homolog Bit Score 1026.0
Other Homologs: t_PA5375 (ORF: GLIMMER)
GC ORF Sequence
GTGTTCTTCGGCTCGACCGCACTGATCCTGGTTCTGACCGCCGCCCTCATCCTCTATCCCGACAGCGCCGGA
GCCTTGCTCGGCCGCATCCAGGCGTGGCTGTCGCACAGCTTCGGCTGGTACTACATGCTGGCCATCGGCGCC
TACCTGTTCTTCGTCGCCTGGGTGGCCTTCTCGCGCTTCGGCACCCTCAAGCTCGGCGAGGAGCATGAAAAG
CCGGACTTCAGCTACGGCGCCTGGGCCGGCATGCTGTTCTCCTCCGGGATCGGCATCTCGCTGCTCTACTTC
GCCGCATCCGAGCCGATCGACCACCTCTACCACCCGCCCGAAGGCGTTCCCGGCAGCCCTCAGGCGGCGCGC
CAGGCGCTGCAACTGACCTTCCTCCACTGGGGCCTGCACGGTTGGGCGATCTATGCCCTGGTCGGCCTCGCC
GTCGGCTATTTCGCCTACCGCCATCGCCAGCCGCTGGCGTTGCGCTCGGCGCTCTATCCGATCCTCGGCGAG
CGCTGGGTGAAAGGCGCCGCGGGCCACGCGGTGGATTGCTTCGGCATCTTCGTCACCCTTCTCGGGCTGGTG
ACCAACCTGGGCATCGGCGCCTTGCAGGTGTCGTCCGGTCTCGAGTACCTGACCGGCATGCCGCACAGCAAA
GGCACCCTGCTGGCGGTGATCCTCGTGATGAGCCTGGTCGCCACCCTGGCGGCGGTCTCCGGTATCGAGAAA
GGCATCCGCCGGCTGTCCAACCTGAATATCGTGCTGTTCAGCTCGCTGCTGCTGTTCGTGCTGGTCTGCGGT
TCGACCCTGGAACTGCTCAACGGCTTCGTACAGAACCTCGGCGACTATCTCGACGGCCTGGTGCTGAAGACC
TTCGACCTCTACGTCTACACCGGTGCCGGCGCCGGCAAGAGCGAGGAATGGCTGGGCCTGTGGACCCTGTTC
TACTGGGCCTGGTGGATTTCCTGGGCGCCCTTCGTCGGTATGTTCATCGCCCGCATCTCCCGTGGTCGCAGC
GTGCGCGAACTGGTCTGCGGGGTGCTGCTGATCCCGCTGGGCTTCACCCTGGCCTGGCTGTCGGTATTCGGC
AACAGCGCCCTGGACCTGGTGATGAACCACGGCGCGACCGACCTGGGCAAGGCCGCGCTGGAACAGCCGTCG
ATGTCGATCTACCTGCTGCTGGAACACTATCCGCTGTCGAAGATCGTCATCGGCCTGTCGATCTTCGTCGGC
TTCGTGCTGTTCCTCACCCCGGCGGATTCCGGCTCGGTGATGCTGGCCAATCTCTCGCGCAGCGGCGGCGAG
CTGGACGAGGACGCGCCGAACTGGCTGCGCATCCTCTGGTCGGCCGTCGTCACGCTAGTCACCATCGGCCTG
CTGTTCGCCGGCAACTTCACGGCGATGCAAACCGTCGTGGTGCTCGCCGGGCTACCGTTCTCGGCGGTGCTG
ATCCTGTTCATGTTCGGCCTGCACAAGGCCATGCGCGCCGACTACGAGGCCCAGGTCGGCGACCGCCGCACC
TACCAGCCAGTGCCGGCGCCAACCCAGCACCAGACCTGA