ViewGene
Locus Name:
GeneID:
Location:

GeneID:7078
TrivialName: PA14_03400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03400
PAO1 Ortholog Locus:
Sequence Length:333
Protein Length:110
Start: 312499
Stop: 312167
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
TTGAGTCAAAAACAGCTTGAAAGTCTCATACGCCTCATTAATATCACTTTCGATCCAAACAGCTCATATTTG
ATTCATTTGAATCCGGAGAGAGTGATGAACGAAATCTATCTGACGACCGACGAGCTGTCTCAGCGCATCAAA
TACGATGCGCGGACCATCCGTAATTGCCTGAAGGACTCTGTGCTGCTGGAAGGTATCCATTACTTCCGCCCC
TTTGGCGGTCGAAAAATCCTGTTCATCTGGGAAGCTGTAGAACGGGACATGGTCAAGTTCTCGCGTGAAAAC
GGCTTTGGCATCCCGATGGCGAATGGGGGGATCTGCCGTGGGTAA
Translation:
MSQKQLESLIRLINITFDPNSSYLIHLNPERVMNEIYLTTDELSQRIKYDARTIRNCLKDSVLLEGIHYFRP
FGGRKILFIWEAVERDMVKFSRENGFGIPMANGGICRG*
AnnotationID:7078GeneID:7078
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 15:03:19
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67088376|gb|EAM07842.1|  hypothetical protein AvinDRAFT_7763 [Azotobacter vinelandii AvOP]
     Length=77
     Score =  123 bits (308),  Expect = 2e-27
     Identities = 58/78 (74%), Positives = 67/78 (85%), Gaps = 1/78 (1%)

gi|71846577|gb|AAZ46073.1|  hypothetical protein Daro_1323 [Dechloromonas aromatica RCB]
     Length=94
     Score =  113 bits (283),  Expect = 2e-24
     Identities = 54/74 (72%), Positives = 61/74 (82%), Gaps = 1/74 (1%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:16803




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31229




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50080How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6113840Stop: 6113508

          
Length: 333


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGAGTCAAAAACAGCTTGAAAGTCTCATACGCCTCATTAATATCACTTTCGATCCAAACAGCTCATATTTG 
ATTCATTTGAATCCGGAGAGAGTGATGAACGAAATCTATCTGACGACCGACGAGCTGTCTCAGCGCATCAAA 
TACGATGCGCGGACCATCCGTAATTGCCTGAAGGACTCTGTGCTGCTGGAAGGTATCCATTACTTCCGCCCC 
TTTGGCGGTCGAAAAATCCTGTTCATCTGGGAAGCTGTAGAACGGGACATGGTCAAGTTCTCGCGTGAAAAC 
GGCTTTGGCATCCCGATGGCGAATGGGGGGATCTGCCGTGGGTAA