ViewGene
Locus Name:
GeneID:
Location:

GeneID:7077
TrivialName: PA14_03390
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03390
PAO1 Ortholog Locus:
Sequence Length:510
Protein Length:169
Start: 312174
Stop: 311665
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG55553.1|AE005294_8 (AE005294) integrase for bacteriophage BP-933W [Escherichia coli O157:H7 EDL933]
Identities = 51/146 (34%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Sequence:
GTGGGTAAGATTGTTGCCCGTAAAGAGACCGGAAATCTGTTCTTCGATTTCCGTTACCTGGGCAAGCGCTGC
CGTGAGCAGACGGCCCTTCCCGACACCCCGACCAACCGGAAGAAACTGGAGAAGATCCTCGAGCGCATCGAG
GCCGAAATCACTCTCGGCACCTTCGATTACAACGAGTATTTCCCGCAGAGCGGCCGTGCCGACGAGCTAAGC
CGGCTCAAAGCTGGCATCTCGAGACTGAAGGTGCCGCAATTCAAAGACTTCGCCCAACTCTGGTTCGACGAA
AAAAAGATGGAATGGCGCGATAGCCACACCAATACCGTACGCCTCACGCTCGAGAAATATCTGCTGCCAACG
TTTGGCAAACAAGAGGTCAGCGCCATCACCAAGGCAGACATCCTGGCTTTCCGCTCGGCACTCGGCAAAGTT
CCCGGGCAGAAAGGTCAGAGTCTGACAGCGACGCGAATCAACCACATCAGATTGTTGCGCTGCAGCGTGACG
CCATAA
Translation:
MGKIVARKETGNLFFDFRYLGKRCREQTALPDTPTNRKKLEKILERIEAEITLGTFDYNEYFPQSGRADELS
RLKAGISRLKVPQFKDFAQLWFDEKKMEWRDSHTNTVRLTLEKYLLPTFGKQEVSAITKADILAFRSALGKV
PGQKGQSLTATRINHIRLLRCSVTP*
AnnotationID:7077GeneID:7077
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 15:03:08
Gene Name:
Confidence Code:3
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd00801
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67088375|gb|EAM07841.1|  hypothetical protein AvinDRAFT_7764 [Azotobacter vinelandii AvOP]
     Length=281
     Score =  245 bits (625),  Expect = 5e-64
     Identities = 118/160 (73%), Positives = 137/160 (85%), Gaps = 0/160 (0%)

gi|71161947|gb|EAO11739.1|  Phage integrase [Psychrobacter cryohalolentis K5]
     Length=414
     Score =  151 bits (382),  Expect = 7e-36
     Identities = 82/159 (51%), Positives = 108/159 (67%), Gaps = 8/159 (5%)








 
Structural Features:
cd00801, INT_P4, Bacteriophage P4 integrase.
             CD-Length = 357 residues, only  14.3% aligned
             Score = 48.0 bits (114), Expect = 6e-07






   
Genomic Context:






   
Comment:


















    ReferenceID:16802




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31227




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50079How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6113515Stop: 6113006

          
Length: 510


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGGTAAGATTGTTGCCCGTAAAGAGACCGGAAATCTGTTCTTCGATTTCCGTTACCTGGGCAAGCGCTGC 
CGTGAGCAGACGGCCCTTCCCGACACCCCGACCAACCGGAAGAAACTGGAGAAGATCCTCGAGCGCATCGAG 
GCCGAAATCACTCTCGGCACCTTCGATTACAACGAGTATTTCCCGCAGAGCGGCCGTGCCGACGAGCTAAGC 
CGGCTCAAAGCTGGCATCTCGAGACTGAAGGTGCCGCAATTCAAAGACTTCGCCCAACTCTGGTTCGACGAA 
AAAAAGATGGAATGGCGCGATAGCCACACCAATACCGTACGCCTCACGCTCGAGAAATATCTGCTGCCAACG 
TTTGGCAAACAAGAGGTCAGCGCCATCACCAAGGCAGACATCCTGGCTTTCCGCTCGGCACTCGGCAAAGTT 
CCCGGGCAGAAAGGTCAGAGTCTGACAGCGACGCGAATCAACCACATCAGATTGTTGCGCTGCAGCGTGACG 
CCATAA