ViewGene
Locus Name:
GeneID:
Location:

GeneID:7076
TrivialName: PA14_03380
AnnotatorUID: danlee
Modification Date/Time:2006-04-10 14:02:43
LocusName:PA14_03380
PAO1 Ortholog Locus:
Sequence Length:1980
Protein Length:659
Start: 309749
Stop: 311728
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO71983.1| (AE016849) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
Identities = 140/637 (21%), Positives = 262/637 (41%), Gaps = 43/637 (6%)
Sequence:
TTGAGATTGAAAAAAAGACACGATCCGATGATTGCCCTAGAGGCAGCTCAGTCGTTCACAAAAAGGGAATTA
TGTGTGCCGCTTGCCCGATGGATCTCAGATTTTCTATCCAGGCGTGGACTGCAAAAGCCAGATGGTCGTCCC
CTTTTTGCCTATAAGACCTCTTCAGAAGAGTTCAGGGCACTGCGCCAGCTTTTGCAGAATCTTCCCGGAGGA
CAGCAAGTAAGTCCCAGCTACCCTCAGGCTTGGCTACTGTTTGCCGCCGAGTGGTGGAAGCGAGAATATTCA
GGTGGCGCATGGCGCTGGGGGCCGCTGTGCGAGGCGGCAGGCCAGCGGGGCTTGTCACATGAGAAGACTCGC
AAGCTGGTCATTGAAGGGCGTCGCCAATGGTGTCTGCAAACCGCCAtCaAGAATGAagGCAAACGTTTCATC
GGCCTGGTCGCGGTGAATGGCGGCCTGCCGATGCGCCTGGTCGAGTCGGCGCAGGGCGGGCTATCCGGCCTG
CTGCGCATGGTCACCCTACAGGCGGTGGACTACGACCTGCACGATGAGCAACTGCGTCAGGCTATCGAAGCC
CAGGCTGCTCTTTTGCCCGCATGCTATCAGCAAGCACCGGTCTATGAGCTGCTGGACAACCTGATCAAGGCG
GTCCTGCATATCCGCAGGACCTATGCTCTGAAGGGTACCCAAGATCCGATCGCCAAGCTGCAGGAAGAATGC
CCTCAGTGGGAAGAGCTCTTTCCCATCGCACTCGACAGTCAGGCAGCAGCCAGCCTCATCAAGGGCCTGGTC
CGGGTCACAGTCAGCATCACGCCCCAGTCCAGGCGCCCCCCTTTCCAGATTCAGCGTGGCCTGCGCTTCAGC
TCCGACGGCTCCATGCCCGTCTACGAGCTGTCCTTTGCCATGCAGGCACAAGCCAAGCGAGATCAAGTTGCC
GAGTCACTGGGGTTGGCTGCTGATCGACTGCCGCCGCACTTCCAACTGCTGCTGCGCATCGGCGAGCGAGAG
CACCTGGTCGGCGAAGCATTGCTCAGGGATGACGAGTATCAGCTTATCGCCAGACCGCTGCCCTCCATTCAA
ACTGTGCACGAAGCTGCGCAGCTGATAGTCAGTCGCTGGGGCGCCACTTTGCACATCGCCAACCTGCCCGGC
GGCGAAGCGTTAAGCCACGACGAACCGTTGATCTTCGAAAATACTTATCCCTTTGCTCGTCTGATTGCGCAA
GGCGATGCTCTGGTGAAGGGGCTGTCCGCACTGGCGGTCATGCCGGCAAGAACCATCGTATTGGCTGAGGAA
GGCGAGACCCGTGAACTTCACGACTGCCTTGCTGATGGGCAGATGCTGATGGAGCTTCCGGCCGGCAAAACG
AGGCTCGCCTATCGCGGACAAGCGTTCATTGTCACCATCAGCGCCAGTGCTACGCACCGCCCGGAAGCCTAT
TGGCAAGGTAATAGCCTAGAGGCGCTCTCTGTGCCGGGCCTGCTGTTCCGCGGTACGCCACACCTTCGAGTC
GATCAGGGGCTGGGGCATTCCAGTTACGCGCCGTCCCATGAACTTTTTGTTCGCAGTCATTCCAAGGAGCTC
CCACTCGGTGAGGCACAGGCACCAGGACTATGCCGACTGATCTGGCGCAAGGATGGCCAGCGCCTACTGAGC
ACCCGCGCCGTACTCCTTCCGGAGGGAGCTTCCATTACCTATGTTCCAGCGGCAAGCACCCTCGAAGGAACC
ATCCGGCTCGACAACTGGCCCGACGTACCAGTCCGTTGTGAGAACGAAGAGATCGAGCTGGACAGCCGTCAT
GATGGGACAAACCTGGTCCTCAGGCTGAAAAGCACGAGCGCTCGGCCTGCAACTTCAGTTCCGCTCTGCATG
CAGTGGCCCGACGGCGAACATAGGCTCACGCTGCCTTTCCCCGGTTATGGCGTCACGCTGCAGCGCAACAAT
CTGATGTGGTTGATTCGCGTCGCTGTCAGACTCTGA
Translation:
MRLKKRHDPMIALEAAQSFTKRELCVPLARWISDFLSRRGLQKPDGRPLFAYKTSSEEFRALRQLLQNLPGG
QQVSPSYPQAWLLFAAEWWKREYSGGAWRWGPLCEAAGQRGLSHEKTRKLVIEGRRQWCLQTAIKNEGKRFI
GLVAVNGGLPMRLVESAQGGLSGLLRMVTLQAVDYDLHDEQLRQAIEAQAALLPACYQQAPVYELLDNLIKA
VLHIRRTYALKGTQDPIAKLQEECPQWEELFPIALDSQAAASLIKGLVRVTVSITPQSRRPPFQIQRGLRFS
SDGSMPVYELSFAMQAQAKRDQVAESLGLAADRLPPHFQLLLRIGEREHLVGEALLRDDEYQLIARPLPSIQ
TVHEAAQLIVSRWGATLHIANLPGGEALSHDEPLIFENTYPFARLIAQGDALVKGLSALAVMPARTIVLAEE
GETRELHDCLADGQMLMELPAGKTRLAYRGQAFIVTISASATHRPEAYWQGNSLEALSVPGLLFRGTPHLRV
DQGLGHSSYAPSHELFVRSHSKELPLGEAQAPGLCRLIWRKDGQRLLSTRAVLLPEGASITYVPAASTLEGT
IRLDNWPDVPVRCENEEIELDSRHDGTNLVLRLKSTSARPATSVPLCMQWPDGEHRLTLPFPGYGVTLQRNN
LMWLIRVAVRL*
AnnotationID:7076GeneID:7076
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 15:03:23
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|53755239|emb|CAH16733.1|  hypothetical protein [Legionella pneumophila str. Lens]
     Length=1130
     Score =  167 bits (422),  Expect = 2e-39
     Identities = 155/632 (24%), Positives = 268/632 (42%), Gaps = 35/632 (5%)

gi|29140420|gb|AAO71983.1|  conserved hypothetical protein [Salmonella enterica subsp. enterica             
serovar Typhi Ty2]
gi|25512630|pir||AE1065  conserved hypothetical protein STY4851 [imported] - Salmonella 
enterica subsp. enterica serovar Typhi (strain CT18)
     Length=1099
     Score =  124 bits (312),  Expect = 9e-27
     Identities = 140/637 (21%), Positives = 262/637 (41%), Gaps = 43/637 (6%)

gi|56130537|gb|AAV80043.1|  conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
     Length=1099
     Score =  123 bits (309),  Expect = 2e-26
     Identities = 140/637 (21%), Positives = 262/637 (41%), Gaps = 43/637 (6%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:16800




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31225




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50078How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6111090Stop: 6113069

          
Length: 1980


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
TTGAGATTGAAAAAAAGACACGATCCGATGATTGCCCTAGAGGCAGCTCAGTCGTTCACAAAAAGGGAATTA 
TGTGTGCCGCTTGCCCGATGGATCTCAGATTTTCTATCCAGGCGTGGACTGCAAAAGCCAGATGGTCGTCCC 
CTTTTTGCCTATAAGACCTCTTCAGAAGAGTTCAGGGCACTGCGCCAGCTTTTGCAGAATCTTCCCGGAGGA 
CAGCAAGTAAGTCCCAGCTACCCTCAGGCTTGGCTACTGTTTGCCGCCGAGTGGTGGAAGCGAGAATATTCA 
GGTGGCGCATGGCGCTGGGGGCCGCTGTGCGAGGCGGCAGGCCAGCGGGGCTTGTCACATGAGAAGACTCGC 
AAGCTGGTCATTGAAGGGCGTCGCCAATGGTGTCTGCAAACCGCCAtCaAGAATGAagGCAAACGTTTCATC 
GGCCTGGTCGCGGTGAATGGCGGCCTGCCGATGCGCCTGGTCGAGTCGGCGCAGGGCGGGCTATCCGGCCTG 
CTGCGCATGGTCACCCTACAGGCGGTGGACTACGACCTGCACGATGAGCAACTGCGTCAGGCTATCGAAGCC 
CAGGCTGCTCTTTTGCCCGCATGCTATCAGCAAGCACCGGTCTATGAGCTGCTGGACAACCTGATCAAGGCG 
GTCCTGCATATCCGCAGGACCTATGCTCTGAAGGGTACCCAAGATCCGATCGCCAAGCTGCAGGAAGAATGC 
CCTCAGTGGGAAGAGCTCTTTCCCATCGCACTCGACAGTCAGGCAGCAGCCAGCCTCATCAAGGGCCTGGTC 
CGGGTCACAGTCAGCATCACGCCCCAGTCCAGGCGCCCCCCTTTCCAGATTCAGCGTGGCCTGCGCTTCAGC 
TCCGACGGCTCCATGCCCGTCTACGAGCTGTCCTTTGCCATGCAGGCACAAGCCAAGCGAGATCAAGTTGCC 
GAGTCACTGGGGTTGGCTGCTGATCGACTGCCGCCGCACTTCCAACTGCTGCTGCGCATCGGCGAGCGAGAG 
CACCTGGTCGGCGAAGCATTGCTCAGGGATGACGAGTATCAGCTTATCGCCAGACCGCTGCCCTCCATTCAA 
ACTGTGCACGAAGCTGCGCAGCTGATAGTCAGTCGCTGGGGCGCCACTTTGCACATCGCCAACCTGCCCGGC 
GGCGAAGCGTTAAGCCACGACGAACCGTTGATCTTCGAAAATACTTATCCCTTTGCTCGTCTGATTGCGCAA 
GGCGATGCTCTGGTGAAGGGGCTGTCCGCACTGGCGGTCATGCCGGCAAGAACCATCGTATTGGCTGAGGAA 
GGCGAGACCCGTGAACTTCACGACTGCCTTGCTGATGGGCAGATGCTGATGGAGCTTCCGGCCGGCAAAACG 
AGGCTCGCCTATCGCGGACAAGCGTTCATTGTCACCATCAGCGCCAGTGCTACGCACCGCCCGGAAGCCTAT 
TGGCAAGGTAATAGCCTAGAGGCGCTCTCTGTGCCGGGCCTGCTGTTCCGCGGTACGCCACACCTTCGAGTC 
GATCAGGGGCTGGGGCATTCCAGTTACGCGCCGTCCCATGAACTTTTTGTTCGCAGTCATTCCAAGGAGCTC 
CCACTCGGTGAGGCACAGGCACCAGGACTATGCCGACTGATCTGGCGCAAGGATGGCCAGCGCCTACTGAGC 
ACCCGCGCCGTACTCCTTCCGGAGGGAGCTTCCATTACCTATGTTCCAGCGGCAAGCACCCTCGAAGGAACC 
ATCCGGCTCGACAACTGGCCCGACGTACCAGTCCGTTGTGAGAACGAAGAGATCGAGCTGGACAGCCGTCAT 
GATGGGACAAACCTGGTCCTCAGGCTGAAAAGCACGAGCGCTCGGCCTGCAACTTCAGTTCCGCTCTGCATG 
CAGTGGCCCGACGGCGAACATAGGCTCACGCTGCCTTTCCCCGGTTATGGCGTCACGCTGCAGCGCAACAAT 
CTGATGTGGTTGATTCGCGTCGCTGTCAGACTCTGA