ViewGene
Locus Name:
GeneID:
Location:

GeneID:7073
TrivialName: PA14_03350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03350
PAO1 Ortholog Locus:
Sequence Length:954
Protein Length:317
Start: 306903
Stop: 305950
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAB76774.1| (AP003598) ORF_ID:alr5075~unknown protein [Nostoc sp. PCC 7120]
Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 19/190 (10%)
Sequence:
ATGGCTGAGCTAAATGTGATCTTCGATGTGCCGGAGGCGATTGCCGAGGGGCTGAAAAACGGTGTTTATGAA
CGTATCGGTGGCGTCATCCGCAGGGTGGCTGACAAGCAGATCGTGATGTGGCTGCAGGAAGGTGTGCTGCTG
GAACGCGATACTGCCGAACAGTTGCTCAAACAGGGGGCCGAGCATGTCCAGTTGCTGCGTCAGCAGGCTGAG
CAACTGCAAATGCTCGGTGTGCAACAGCAGTTGATCATGGGGCTGGAGGTGGCCAATCTGGCGGTCAGTGTC
GCGGGCTTTGCGCTAACGCTGTACAAGCTGCAGGGTATCGAGAACCAGCTTAGACACATGGATGGCAAGCTC
GACGACATCCGGCAGGGTGTCGAGTGGCTAGATGTCAGGCAGATGATCAGCCGGCTGGCTCCTTTACATGCA
GCCCTGCAGCATGTACGCGAGGCCGGGCTGTATCGTAATGCCGCGATGATGCAGCAGCAGCTCGGTATTGCT
AACAGCCAGCTCGCAGAGAGCCAAAGTTACTTTGGTGGGCTATTGCAGCATGTGAGTGAGCGTTCGTTTGAG
TATCTGCAGCCCGGCGAGTTTGCGGCCGCTTACCGGGGTTGGGTGATGTCTGCGCAGGGGCGGTTGCAGGTG
CTGGCTCGTTTGGGGGAAATGGATCTGGCTGCGCATCTCGCCAATGAGTTCAAGGAACGTCATGCCGGGTTC
GGTCAGCGGCTGCAGCAAAGCCTGAAAAATCCGGCGCTGCGCCTAATGGCGGGTCAGCAAGGCGAAACCAAT
CATGCTCGCTTGCTTAGCATTGCTGAGCAGGCCGTCGGTGCACACGAGATCATCCGCGGTAACGTTATGCAG
CTGGAGTTCATGCGCGATGAGCAATTGGATCTGCCAATTCTGAATAGTCCGGCCGGGTATCAAGGATTGGCG
TTCTGCCGAGTGGGCTGA
Translation:
MAELNVIFDVPEAIAEGLKNGVYERIGGVIRRVADKQIVMWLQEGVLLERDTAEQLLKQGAEHVQLLRQQAE
QLQMLGVQQQLIMGLEVANLAVSVAGFALTLYKLQGIENQLRHMDGKLDDIRQGVEWLDVRQMISRLAPLHA
ALQHVREAGLYRNAAMMQQQLGIANSQLAESQSYFGGLLQHVSERSFEYLQPGEFAAAYRGWVMSAQGRLQV
LARLGEMDLAAHLANEFKERHAGFGQRLQQSLKNPALRLMAGQQGETNHARLLSIAEQAVGAHEIIRGNVMQ
LEFMRDEQLDLPILNSPAGYQGLAFCRVG*
AnnotationID:7073GeneID:7073
AnnotatorUID: danlee
Modification Date/Time: 2005-10-05 15:03:25
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|17232567|ref|NP_489115.1|  hypothetical protein alr5075 [Nostoc sp. PCC 7120]
     Length=480
     Score = 57.4 bits (137),  Expect = 6e-07
     Identities = 46/190 (24%), Positives = 88/190 (46%), Gaps = 19/190 (10%)

gi|75702271|gb|ABA21947.1|  conserved hypothetical protein [Anabaena variabilis ATCC 29413]
     Length=466
     Score = 47.8 bits (112),  Expect = 5e-04
     Identities = 39/157 (24%), Positives = 69/157 (43%), Gaps = 18/157 (11%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:13811




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31219




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50075How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6108244Stop: 6107291

          
Length: 954


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCTGAGCTAAATGTGATCTTCGATGTGCCGGAGGCGATTGCCGAGGGGCTGAAAAACGGTGTTTATGAA 
CGTATCGGTGGCGTCATCCGCAGGGTGGCTGACAAGCAGATCGTGATGTGGCTGCAGGAAGGTGTGCTGCTG 
GAACGCGATACTGCCGAACAGTTGCTCAAACAGGGGGCCGAGCATGTCCAGTTGCTGCGTCAGCAGGCTGAG 
CAACTGCAAATGCTCGGTGTGCAACAGCAGTTGATCATGGGGCTGGAGGTGGCCAATCTGGCGGTCAGTGTC 
GCGGGCTTTGCGCTAACGCTGTACAAGCTGCAGGGTATCGAGAACCAGCTTAGACACATGGATGGCAAGCTC 
GACGACATCCGGCAGGGTGTCGAGTGGCTAGATGTCAGGCAGATGATCAGCCGGCTGGCTCCTTTACATGCA 
GCCCTGCAGCATGTACGCGAGGCCGGGCTGTATCGTAATGCCGCGATGATGCAGCAGCAGCTCGGTATTGCT 
AACAGCCAGCTCGCAGAGAGCCAAAGTTACTTTGGTGGGCTATTGCAGCATGTGAGTGAGCGTTCGTTTGAG 
TATCTGCAGCCCGGCGAGTTTGCGGCCGCTTACCGGGGTTGGGTGATGTCTGCGCAGGGGCGGTTGCAGGTG 
CTGGCTCGTTTGGGGGAAATGGATCTGGCTGCGCATCTCGCCAATGAGTTCAAGGAACGTCATGCCGGGTTC 
GGTCAGCGGCTGCAGCAAAGCCTGAAAAATCCGGCGCTGCGCCTAATGGCGGGTCAGCAAGGCGAAACCAAT 
CATGCTCGCTTGCTTAGCATTGCTGAGCAGGCCGTCGGTGCACACGAGATCATCCGCGGTAACGTTATGCAG 
CTGGAGTTCATGCGCGATGAGCAATTGGATCTGCCAATTCTGAATAGTCCGGCCGGGTATCAAGGATTGGCG 
TTCTGCCGAGTGGGCTGA