ViewGene
Locus Name:
GeneID:
Location:

GeneID:7072
TrivialName: PA14_03340
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03340
PAO1 Ortholog Locus:
Sequence Length:927
Protein Length:308
Start: 305599
Stop: 304673
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Sequence:
ATGGAGCTATCAACGTTGGCGCGGGAAAACCTCGCTAGGTTGATCAATGCCCCGGAGGTCAAGCGCATCTCC
ATCAGCGGCGAAGGCGAGCCGCTCAACAACGTCAAAGTGTTCCACGAGATCCTCGGGTTGTCCGAAGGTGGC
AAGTGCTTCGAGTTCATCACTAGTGGGTTCTACCCACACGACAAGATGGCGGACTTCTACGACACCACCAAC
CGCATCGTCTTGGGCAATGGCGACGTCTGCAACATCCGCCTGAGTGCCGACAGTCACCACATTGAGCAAGTC
AAATGGCGGGCCCATGGCTTCAGTCTGGACTACCTGCGGAGCCGGTGCCCGTCCGGTCTGAGTTTCTCGTTC
CGCTCGATCGACACGGATCGCGACTTCACTCGCGAGTATCTGAAGTCCGAACTGGCCCGCTGGGGGGTTGAG
GCAACCATCGAGCCGCGAAGTGTGCTGGAAGACGTGCTGGTCGCGGGCGGTGAGTGCTTCGGCATCGACTAC
AAGAACCTGGTACATCCCGCTCCTGGAACCGCACCGGGTTATCTGGACATGCTGGGCTACATCGAGGCGATC
GAGTCTAAGGTCAACAAACGCTTCACCTTCGGAAGCCTGAACAAACCGCCGCAGGCCAACGGTTTGGATGTC
ACGGTGAAGCCGAACGGCGACGTATACCTATATGGCATCGAGAACCAGCGCCTGGGCAACATTCACTTTGAC
CGGGTCGATTGGCAACGGCTAGTTGCGCACGTGCGGGAGACACCATTGACCCGAGCACTCTATACGCAACCC
TTGACTGAGTTGCTGGCGCGCCTGGAGAAGACGGACCTGCTGCGTTCAATCATTGCCAAGGCGAACAACCCC
TACTGGCTGGTGAAGGAGCTGGCAGGTCATGCCGGGTTGCTCGAACAGTGGGAGGCTGCATGA
Translation:
MELSTLARENLARLINAPEVKRISISGEGEPLNNVKVFHEILGLSEGGKCFEFITSGFYPHDKMADFYDTTN
RIVLGNGDVCNIRLSADSHHIEQVKWRAHGFSLDYLRSRCPSGLSFSFRSIDTDRDFTREYLKSELARWGVE
ATIEPRSVLEDVLVAGGECFGIDYKNLVHPAPGTAPGYLDMLGYIEAIESKVNKRFTFGSLNKPPQANGLDV
TVKPNGDVYLYGIENQRLGNIHFDRVDWQRLVAHVRETPLTRALYTQPLTELLARLEKTDLLRSIIAKANNP
YWLVKELAGHAGLLEQWEAA*
AnnotationID:7072GeneID:7072
AnnotatorUID: ericdeziel
Modification Date/Time: 2004-03-08 16:04:02
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
No homology.






   
Genomic Context:






   
Comment:
GeneMark is predicting a shorter ORF (start codon about 60 AA downstream)


















    ReferenceID:13809




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31217




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50074How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6106940Stop: 6106014

          
Length: 927


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGAGCTATCAACGTTGGCGCGGGAAAACCTCGCTAGGTTGATCAATGCCCCGGAGGTCAAGCGCATCTCC 
ATCAGCGGCGAAGGCGAGCCGCTCAACAACGTCAAAGTGTTCCACGAGATCCTCGGGTTGTCCGAAGGTGGC 
AAGTGCTTCGAGTTCATCACTAGTGGGTTCTACCCACACGACAAGATGGCGGACTTCTACGACACCACCAAC 
CGCATCGTCTTGGGCAATGGCGACGTCTGCAACATCCGCCTGAGTGCCGACAGTCACCACATTGAGCAAGTC 
AAATGGCGGGCCCATGGCTTCAGTCTGGACTACCTGCGGAGCCGGTGCCCGTCCGGTCTGAGTTTCTCGTTC 
CGCTCGATCGACACGGATCGCGACTTCACTCGCGAGTATCTGAAGTCCGAACTGGCCCGCTGGGGGGTTGAG 
GCAACCATCGAGCCGCGAAGTGTGCTGGAAGACGTGCTGGTCGCGGGCGGTGAGTGCTTCGGCATCGACTAC 
AAGAACCTGGTACATCCCGCTCCTGGAACCGCACCGGGTTATCTGGACATGCTGGGCTACATCGAGGCGATC 
GAGTCTAAGGTCAACAAACGCTTCACCTTCGGAAGCCTGAACAAACCGCCGCAGGCCAACGGTTTGGATGTC 
ACGGTGAAGCCGAACGGCGACGTATACCTATATGGCATCGAGAACCAGCGCCTGGGCAACATTCACTTTGAC 
CGGGTCGATTGGCAACGGCTAGTTGCGCACGTGCGGGAGACACCATTGACCCGAGCACTCTATACGCAACCC 
TTGACTGAGTTGCTGGCGCGCCTGGAGAAGACGGACCTGCTGCGTTCAATCATTGCCAAGGCGAACAACCCC 
TACTGGCTGGTGAAGGAGCTGGCAGGTCATGCCGGGTTGCTCGAACAGTGGGAGGCTGCATGA