ViewGene

Locus Name:
GeneID:
Location:

GeneID:7071
TrivialName: PA14_03330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03330
PAO1 Ortholog Locus:
Sequence Length:867
Protein Length:288
Start: 304676
Stop: 303810
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAF10049.1|AE001906_5 (AE001906) histidinol phosphatase, putative [Deinococcus radiodurans]
Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 28/272 (10%)
Sequence:
ATGATCGACTCACACAGCCACACCTTTTATTCGAAGCATGCGACCGGCACCGTCGATGAATTGGTTCGCGCC
TCGATCGCCGCCGGCGTGACCATCCTAACCCTCACCGACCACGCGCCGTTCCCCGTGGATACCGACAATCGT
CTGCTCGCGTCCGAACTTGATCGCTATTTCGCCGACATCGAGCGGGCGCGGAATAGCTACCAGGAGCAGATC
ACCATCCTGTGCGGCCTGGAGCTCGACTACATGCCAGGCACCGACGCCTTCAATCGCGAGCTGCTTACTTGT
TACCCGATGGACTTCGTAATCGGCTCAATTCATTACGTGGAAGTTCCAGACGAAACCATGGTGAAGGTCTGG
GAGCTGCCGCGCCTGGCCGGACAGGCGTTCCTGGACCGCTACTTCGCAAATCTCGAAGGTCTGCTAGACAGC
GGACTGTTTGATGCCGTAGGGCACGCCGACACCTTGCTGCGTGGCGTGCCGGAAGACATCTTCCTGCGCCGT
TTCGAACCTTTGCTGGCGCCGCTCGCCCGAAGCGGTATTGCATTCGAGCTCAATGCCTCAGGTCTTCGAAAG
TCGAGTCTGGATCCTGCAACGGGGAGGGAGGTTCAGGGCTTTTGGTCTTATCCGTCTCGAGAGTTGGTGGCT
CAGCTTATCGCGCACGAAGTGCCCTTCACGGTTGGGTCCGATACCCATGACCCGAGTGACGCCGGTGCAGGC
ATTGCCGAGCTGCTCACGGCCCTGCAGCCTTTGGGGCTGCAGCGCATTAGTTACTACGAGAGGCGCCGACGA
ATTGATGTCGCCCTCGACACCCTGGCGCTACCAGGTGCACCAGCAACTTTGACAGAAGGACTTGAACGGCCT
TGA
Translation:
MIDSHSHTFYSKHATGTVDELVRASIAAGVTILTLTDHAPFPVDTDNRLLASELDRYFADIERARNSYQEQI
TILCGLELDYMPGTDAFNRELLTCYPMDFVIGSIHYVEVPDETMVKVWELPRLAGQAFLDRYFANLEGLLDS
GLFDAVGHADTLLRGVPEDIFLRRFEPLLAPLARSGIAFELNASGLRKSSLDPATGREVQGFWSYPSRELVA
QLIAHEVPFTVGSDTHDPSDAGAGIAELLTALQPLGLQRISYYERRRRIDVALDTLALPGAPATLTEGLERP
*
AnnotationID:7071GeneID:7071
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 18:06:09
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|18203432|sp|Q9RX45|HIS9_DEIRA  Probable histidinol-phosphatase (HolPase)
gi|15805497|ref|NP_294193.1|  histidinol phosphatase, putative [Deinococcus radiodurans R1]
      Length=260
      Score =  132 bits (332),  Expect = 1e-29
      Identities = 84/272 (30%), Positives = 137/272 (50%), Gaps = 28/272 (10%)

gi|66781550|gb|EAL82518.1|  Histidinol phosphate phosphatase, HisJ [Deinococcus geothermalis DSM 11300]
     Length=263
     Score =  130 bits (327),  Expect = 5e-29
     Identities = 87/273 (31%), Positives = 132/273 (48%), Gaps = 28/273 (10%)

Structural Features:
COG1387, HIS2, Histidinol phosphatase and related hydrolases of the PHP family [Amino acid 
transport and metabolism / General function prediction only].
             CD-Length = 237 residues,  84.8% aligned
             Score = 95.4 bits (237), Expect = 7e-21

smart00481, POLIIIAc, DNA polymerase alpha chain like domain; DNA polymerase alpha 
chain like domain, incl. family of hypothetical proteins .
             CD-Length = 68 residues,  95.6% aligned
             Score = 39.5 bits (92), Expect = 4e-04
Genomic Context:
Comment:
ReferenceID:13808
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:31215
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 50073How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 6106017Stop: 6105151
Length: 867
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGATCGACTCACACAGCCACACCTTTTATTCGAAGCATGCGACCGGCACCGTCGATGAATTGGTTCGCGCC
TCGATCGCCGCCGGCGTGACCATCCTAACCCTCACCGACCACGCGCCGTTCCCCGTGGATACCGACAATCGT
CTGCTCGCGTCCGAACTTGATCGCTATTTCGCCGACATCGAGCGGGCGCGGAATAGCTACCAGGAGCAGATC
ACCATCCTGTGCGGCCTGGAGCTCGACTACATGCCAGGCACCGACGCCTTCAATCGCGAGCTGCTTACTTGT
TACCCGATGGACTTCGTAATCGGCTCAATTCATTACGTGGAAGTTCCAGACGAAACCATGGTGAAGGTCTGG
GAGCTGCCGCGCCTGGCCGGACAGGCGTTCCTGGACCGCTACTTCGCAAATCTCGAAGGTCTGCTAGACAGC
GGACTGTTTGATGCCGTAGGGCACGCCGACACCTTGCTGCGTGGCGTGCCGGAAGACATCTTCCTGCGCCGT
TTCGAACCTTTGCTGGCGCCGCTCGCCCGAAGCGGTATTGCATTCGAGCTCAATGCCTCAGGTCTTCGAAAG
TCGAGTCTGGATCCTGCAACGGGGAGGGAGGTTCAGGGCTTTTGGTCTTATCCGTCTCGAGAGTTGGTGGCT
CAGCTTATCGCGCACGAAGTGCCCTTCACGGTTGGGTCCGATACCCATGACCCGAGTGACGCCGGTGCAGGC
ATTGCCGAGCTGCTCACGGCCCTGCAGCCTTTGGGGCTGCAGCGCATTAGTTACTACGAGAGGCGCCGACGA
ATTGATGTCGCCCTCGACACCCTGGCGCTACCAGGTGCACCAGCAACTTTGACAGAAGGACTTGAACGGCCT
TGA