ViewGene
Locus Name:
GeneID:
Location:

GeneID:707
TrivialName: PA14_37840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37840
PAO1 Ortholog Locus:PA2061
Sequence Length:1611
Protein Length:536
Start: 3376478
Stop: 3374868
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05449.1|AE004632_8 (AE004632) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 531/536 (99%), Positives = 533/536 (99%)
Sequence:
ATGAACCGGGAACTGTTGCGAGTGGAAAACCTGAGCGTCGCCTATGGCGACACGCAGGTCGTGAAGGGGATC
GACTTCAGCCTGCGCGCCGGCGAGACCCTGGCCCTGGTCGGCGAGTCCGGCTCCGGCAAGTCGCAGACCGCC
CACGCCCTGCTGCGCCTGCTGCCGGGCGCGGCGCGCCTGGGCGGCAGCGTGCGCCTGGACGGCGAGGAACTG
CTCGCCCTGTCGCCGCAGGCATTGCTGGCGATTCGTGGGCAGCGCATCGGCATGGTGTTCCAGGAGCCGATG
ACCTCGCTCAATCCATTGCAGCGCATCGGCCGCCAGGTCGGCGAGGGCCTGCGCCTGCATCGCCGCCTGCGT
GGCGCCGCGCTGCGCGGGCGGGTACTGGAACTGCTCGAACTGGCCGGCCTCGAGCAGCCGCGACGCCTGCTC
GAGGCCTATCCGCACCAGCTCTCCGGCGGCCAGCGACAGCGAGTGATGCTGGCCATGGCGCTGGCTTGCGAG
CCGCAACTGCTGATCGCCGACGAACCGACCACGGCTCTCGACGTCACCGTGCAGAAACGCCTCCTGGAGCTG
CTGCAAAGCTTGCAGCGACGGCTGGGCATGGCGATCCTGCTGATCAGCCACGACCTCAACCTGGTGCGCCGG
GTCGCCGATCGGGTCTGCGTGATGCACGATGGCCGGATCGTCGAGGAGAACGCCTGCGAGACGCTGTTCCGC
TCGCCCCGGCATCCCTACACGCGCCTGCTGATCGAGGCCGAGCCGGGTGGGCTGGCGGAGCCGGTGGCGTGC
CGCGAGACCTGCCTGGAGGTGCGCGCGCTGAGCCTCGACTACCCCGCGCCCGGCGGCTGGCTGCGCCGGCGC
GCGGGACTGCGCGCGGTGCACGAGGTCAGCCTGCGGCTGCGCCGTGGCAGCACTCTGGGGATCGTCGGCGAA
AGCGGTTCAGGCAAGTCCTCCCTCGGCCAGGCGCTGCTGCGCCTGTTGCCGGCCGAAGGGCAGATCCTGTTC
CAGGGCGAGCGCCTCGACCGGCTGCACGGCAAGCGCCTGTTGCCATTGCGCCGGCAGTTCCAGGCGGTGTTC
CAGGACCCCTACGGCAGCCTCAACCCGCGCCTTAGCGTGGAACAGATCGTCGGCGAAGGCCTGCGTATCCAT
GGCATCGGCGATGCCGGCGAACGCCGCGCGCGGGTGCTGGAGGCACTGCGCGAGGTCGGTCTCGACGAGCCT
TGCCTGGAACGCTATCCCCACGAGTTTTCCGGCGGCCAGCGCCAGCGCATCGCCATCGCCCGCGCGCTGGTG
CTGAAGCCGGCGCTGATCCTGCTCGACGAACCGACCTCGGCGCTCGACCGCAGCGTGCAGTGCCAGGTGGTC
GAGCTGCTGCGTCGGTTGCAGCGCCGCCACGGGCTGAGCTACCTGTTCATCAGCCACGACCTGGCCGTGGTT
CGCGCCCTGGCCCACGACATCCTGGTGCTCAAGGACGGCCGGGTGGTGGAGCAGGGCAGCGCCGCGGCGCTG
TTCAGCCAGCCGCGCCATCCCTATACCCGCGAGTTGCTCGGGACGATGCCGGCGCTGCGCCTGGAAGAGCAC
CTGCGGGTGGCCGGGCTGGGAATCTGA
Translation:
MNRELLRVENLSVAYGDTQVVKGIDFSLRAGETLALVGESGSGKSQTAHALLRLLPGAARLGGSVRLDGEEL
LALSPQALLAIRGQRIGMVFQEPMTSLNPLQRIGRQVGEGLRLHRRLRGAALRGRVLELLELAGLEQPRRLL
EAYPHQLSGGQRQRVMLAMALACEPQLLIADEPTTALDVTVQKRLLELLQSLQRRLGMAILLISHDLNLVRR
VADRVCVMHDGRIVEENACETLFRSPRHPYTRLLIEAEPGGLAEPVACRETCLEVRALSLDYPAPGGWLRRR
AGLRAVHEVSLRLRRGSTLGIVGESGSGKSSLGQALLRLLPAEGQILFQGERLDRLHGKRLLPLRRQFQAVF
QDPYGSLNPRLSVEQIVGEGLRIHGIGDAGERRARVLEALREVGLDEPCLERYPHEFSGGQRQRIAIARALV
LKPALILLDEPTSALDRSVQCQVVELLRRLQRRHGLSYLFISHDLAVVRALAHDILVLKDGRVVEQGSAAAL
FSQPRHPYTRELLGTMPALRLEEHLRVAGLGI*
AnnotationID:716GeneID:707
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:23
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA2061
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4172,COG1123
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56522.1| (AE016866) peptide ABC transporter, ATP-binding protein, putative
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 525

 Score =  616 bits (1589), Expect = e-175
 Identities = 316/519 (60%), Positives = 402/519 (77%), Gaps = 2/519 (0%)

>emb|CAC49264.1| (AL603645) putative oligopeptide uptake ABC transporter ATP-binding
           protein, consisting of 2 fused ATP-binding domains
           [Sinorhizobium meliloti]
          Length = 533

 Score =  551 bits (1420), Expect = e-156
 Identities = 294/525 (56%), Positives = 376/525 (71%), Gaps = 7/525 (1%)

>gb|AAF96490.1| (AE004389) peptide ABC transporter, ATP-binding protein, putative
           [Vibrio cholerae]
          Length = 530

 Score =  548 bits (1412), Expect = e-155
 Identities = 287/525 (54%), Positives = 379/525 (72%), Gaps = 8/525 (1%)








 
Structural Features:
COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component
CD-Length = 534 residues,  99.8% aligned
Score =  748 bits (1933), Expect = 0.0
Identities = 332/533 (62%), Positives = 398/533 (74%), Gaps = 9/533 (1%)

COG1123, COG1123, ATPase components of various ABC-type transport systems, 
contain duplicated ATPase
CD-Length = 539 residues,  99.4% aligned
Score =  602 bits (1555), Expect = 3e-173
Identities = 290/538 (53%), Positives = 356/538 (66%), Gaps = 17/538 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1417




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18559




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32644




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:707_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:707
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1211
                           PA2061_tr
                           translation of PA2061
                           536
                           99.06
                           99.44
                           0
                           2653.0
     

     
     
45684
                           gb|AAG05449.1|AE004632_8
                           (AE004632) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           536
                           99.06
                           99.44
                           0
                           2653.0
     

     
     
1212
                           PA1807_tr
                           translation of PA1807
                           545
                           60.00
                           73.94
                           18
                           1570.0
     

     
     
45686
                           gb|AAG05196.1|AE004607_2
                           (AE004607) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           545
                           60.00
                           73.94
                           18
                           1570.0
     

     
     
45688
                           gb|AAN69732.1|AE016609_6
                           (AE016789) peptide ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           546
                           59.52
                           73.44
                           22
                           1542.0
     

     






      

          
GC ORFID: 43709How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2061Glimmer Score: 

          
Start: 1577435Stop: 1579045

          
Length: 1611


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2061 translation of PA2061Homolog Bit Score 1026.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6046 (ORF: BLASTX 622.0), t_PA1807 (ORF: BLASTX 608.0), psyr_15may02_Scaffold1_revised_gene638 (ORF: BLASTX 597.0), psyr_15may02_Scaffold2_revised_gene3083 (ORF: BLASTX 588.0), psyr_15may02_Scaffold7_revised_gene7191 (ORF: BLASTX 402.0), psyr_15may02_Scaffold7_revised_gene7315 (ORF: BLASTX 102.0), t_PA2061 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGGGAACTGTTGCGAGTGGAAAACCTGAGCGTCGCCTATGGCGACACGCAGGTCGTGAAGGGGATC 
GACTTCAGCCTGCGCGCCGGCGAGACCCTGGCCCTGGTCGGCGAGTCCGGCTCCGGCAAGTCGCAGACCGCC 
CACGCCCTGCTGCGCCTGCTGCCGGGCGCGGCGCGCCTGGGCGGCAGCGTGCGCCTGGACGGCGAGGAACTG 
CTCGCCCTGTCGCCGCAGGCATTGCTGGCGATTCGTGGGCAGCGCATCGGCATGGTGTTCCAGGAGCCGATG 
ACCTCGCTCAATCCATTGCAGCGCATCGGCCGCCAGGTCGGCGAGGGCCTGCGCCTGCATCGCCGCCTGCGT 
GGCGCCGCGCTGCGCGGGCGGGTACTGGAACTGCTCGAACTGGCCGGCCTCGAGCAGCCGCGACGCCTGCTC 
GAGGCCTATCCGCACCAGCTCTCCGGCGGCCAGCGACAGCGAGTGATGCTGGCCATGGCGCTGGCTTGCGAG 
CCGCAACTGCTGATCGCCGACGAACCGACCACGGCTCTCGACGTCACCGTGCAGAAACGCCTCCTGGAGCTG 
CTGCAAAGCTTGCAGCGACGGCTGGGCATGGCGATCCTGCTGATCAGCCACGACCTCAACCTGGTGCGCCGG 
GTCGCCGATCGGGTCTGCGTGATGCACGATGGCCGGATCGTCGAGGAGAACGCCTGCGAGACGCTGTTCCGC 
TCGCCCCGGCATCCCTACACGCGCCTGCTGATCGAGGCCGAGCCGGGTGGGCTGGCGGAGCCGGTGGCGTGC 
CGCGAGACCTGCCTGGAGGTGCGCGCGCTGAGCCTCGACTACCCCGCGCCCGGCGGCTGGCTGCGCCGGCGC 
GCGGGACTGCGCGCGGTGCACGAGGTCAGCCTGCGGCTGCGCCGTGGCAGCACTCTGGGGATCGTCGGCGAA 
AGCGGTTCAGGCAAGTCCTCCCTCGGCCAGGCGCTGCTGCGCCTGTTGCCGGCCGAAGGGCAGATCCTGTTC 
CAGGGCGAGCGCCTCGACCGGCTGCACGGCAAGCGCCTGTTGCCATTGCGCCGGCAGTTCCAGGCGGTGTTC 
CAGGACCCCTACGGCAGCCTCAACCCGCGCCTTAGCGTGGAACAGATCGTCGGCGAAGGCCTGCGTATCCAT 
GGCATCGGCGATGCCGGCGAACGCCGCGCGCGGGTGCTGGAGGCACTGCGCGAGGTCGGTCTCGACGAGCCT 
TGCCTGGAACGCTATCCCCACGAGTTTTCCGGCGGCCAGCGCCAGCGCATCGCCATCGCCCGCGCGCTGGTG 
CTGAAGCCGGCGCTGATCCTGCTCGACGAACCGACCTCGGCGCTCGACCGCAGCGTGCAGTGCCAGGTGGTC 
GAGCTGCTGCGTCGGTTGCAGCGCCGCCACGGGCTGAGCTACCTGTTCATCAGCCACGACCTGGCCGTGGTT 
CGCGCCCTGGCCCACGACATCCTGGTGCTCAAGGACGGCCGGGTGGTGGAGCAGGGCAGCGCCGCGGCGCTG 
TTCAGCCAGCCGCGCCATCCCTATACCCGCGAGTTGCTCGGGACGATGCCGGCGCTGCGCCTGGAAGAGCAC 
CTGCGGGTGGCCGGGCTGGGAATCTGA