ViewGene
Locus Name:
GeneID:
Location:

GeneID:7069
TrivialName: PA14_03310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03310
PAO1 Ortholog Locus:
Sequence Length:1599
Protein Length:532
Start: 300333
Stop: 301931
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP96479.1| (AE017155) lipooligosaccharide D-glycero-D-manno-heptosyltransferase [Haemophilus ducreyi 35000HP]
Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 17/285 (5%)
Sequence:
GTGGCTTGCAGCCACAAGAAGCCAGGCTTTCTCGTCCCAGCCCTCATAGAAACCGAGCATCTGAGCAACATG
TCATTCCTACGGGATTTTCGCCGAGTAGTCGCGCGCGCGGCATTTCGTCTTCTGGCAGACAGGCTGCCAAAG
CCCAGAAGCACGAAAGAAAGCCTGCACATTCTTGTCCCCCGTTGGGATGCCAAATTGGGCGACTCGATCGTT
TCGTCTTTCTTCTTTCGTGAGGCTCGCAGACTCAATGCCCGGGTGACCGTGCTGACGGTCGTAGAGCTTGCC
CAGGCGCACACGCAGGACTTTGGTGTGGATCAGGTCGTGATCACGAACGCCAATCCTGGAGTACTCGAACTT
CGCCGCTTGGCGCAGCAGCTTGGACAGGTCGATGTCGTGGTGCATCTGGTAGGAAGGATCCAGCCTGCGGAG
ATCCTGTTTTTGCGACTGCTGCGTCCGACCCGCGTGTACTCACTCGATGACCGTTTACGCTGCGTCAATCGC
AAGTTCGGTGAAACAACTGCTGGTCTCGACATGGCCGAGCGCTACCGACGTGTACTCATGGACTTGGGTGCA
AGTATGGTCGATAGGAAGTACATCGTCCCCCTTCCTGACACGATGCCGAACCCCACCCTCGCCCCGAAAATC
CTACTCAACCCCTACGCCAGCCGCCCAGACAAATGCTTGGCCTTCGACCGATCCGTGAGCTTGCTACACGCC
ATCGCCGATGCTTATCCAACCCGGTCTGTCGGCATCCTGTGCAGCCCCGCGACCCAAGAGGATGCGCTGCGC
ATGGAAGTCGCGGTGGCTCGAAGCAACGTGCACGTCGTCCACGGACTGGCATCCCCCAAGGATGTCGCCGGG
TACATCCGCTGCGCTCAGGTCGTGGTCAGTGTCGACACGGCCATCGTACACATGGCGGTCGGCCTAGAAACA
AGGCTGGTGGCAATCTACCCAGACGTAGATGGACAAGCCAACCCGTGGCTGCCCCCACCCTCTCCGTTGACC
CGTGTCGTCTATAGCCAGCAACACCCTGGCCAAATTCGGCGCACCGGCAAAAAGGACATGAATGCATTCTCG
CTCGAGGCTCTGTTGGACAACCTTCACGAGTTGTTGGCTACTACACCCGAAACTGAACAACTCCATTCGATC
AGAGCGCGGAAAGTGCCTGGCCTGGGTGCCGCGAATGGAACCCTCGCTCGACAGTTGCCCCTGATCAGCCAG
GACTTCCCCGAGGTAGCCGACTGTCACCCCGGGACCATAAATTTGGAGCTCGAATGTCCTCTAGAAGTGACG
CAGCCCGACCATCGCACCGCTCCGCTCGCCTGGACCCCGAGCGGACGGACGACTGAAGTATTCGACTTGGTG
CGAATTGAGCTCGAGTTCGGCCCGTTACCAACGCGAGTGCCCGCATGGTTGTACGTTGCCCACGGATCCCCT
CACCGCTGCACACCGACTGTTCATGAGGTGATCGCCCGGCAGTTAAACCTGAGCGAGGTCCGTGAGTGCCAG
GTTCATCTACGCGCAAGCGCCGTAACACTGGCACGCCCAGATCAACAAACGGCTTCTATCAGCCGCTCGCTT
TCCCCCAGCCAATAG
Translation:
MACSHKKPGFLVPALIETEHLSNMSFLRDFRRVVARAAFRLLADRLPKPRSTKESLHILVPRWDAKLGDSIV
SSFFFREARRLNARVTVLTVVELAQAHTQDFGVDQVVITNANPGVLELRRLAQQLGQVDVVVHLVGRIQPAE
ILFLRLLRPTRVYSLDDRLRCVNRKFGETTAGLDMAERYRRVLMDLGASMVDRKYIVPLPDTMPNPTLAPKI
LLNPYASRPDKCLAFDRSVSLLHAIADAYPTRSVGILCSPATQEDALRMEVAVARSNVHVVHGLASPKDVAG
YIRCAQVVVSVDTAIVHMAVGLETRLVAIYPDVDGQANPWLPPPSPLTRVVYSQQHPGQIRRTGKKDMNAFS
LEALLDNLHELLATTPETEQLHSIRARKVPGLGAANGTLARQLPLISQDFPEVADCHPGTINLELECPLEVT
QPDHRTAPLAWTPSGRTTEVFDLVRIELEFGPLPTRVPAWLYVAHGSPHRCTPTVHEVIARQLNLSEVRECQ
VHLRASAVTLARPDQQTASISRSLSPSQ*
AnnotationID:7069GeneID:7069
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 18:06:20
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|39545767|gb|AAR27967.1|  putative D-glycero-D-manno-heptosyltransferase [Aeromonas hydrophila]
     Length=370
     Score =  140 bits (354),  Expect = 9e-32
     Identities = 106/354 (29%), Positives = 182/354 (51%), Gaps = 27/354 (7%)

gi|33148961|gb|AAP96479.1|  lipooligosaccharide  D-glycero-D-manno-heptosyltransferase [Haemophilus ducreyi 35000HP]
gi|2198847|gb|AAC45593.1|  D-glycero-D-manno-heptosyl transferase [Haemophilus ducreyi]
gi|1388152|gb|AAB49624.1|  LOS biosynthesis enzyme LBGB
     Length=343
     Score = 63.9 bits (154),  Expect = 1e-08
     Identities = 69/285 (24%), Positives = 122/285 (42%), Gaps = 17/285 (5%)








 
Structural Features:
COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane].
             CD-Length = 334 residues,  93.4% aligned
             Score = 87.8 bits (217), Expect = 3e-18

pfam01075, Glyco_transf_9, Glycosyltransferase family 9 (heptosyltransferase).
             CD-Length = 248 residues,  96.0% aligned
             Score = 51.4 bits (123), Expect = 3e-07






   
Genomic Context:






   
Comment:
Possible sequencing error; possibly two separate ORFs


















    ReferenceID:16796




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31211




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50071How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6101674Stop: 6103272

          
Length: 1599


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGGCTTGCAGCCACAAGAAGCCAGGCTTTCTCGTCCCAGCCCTCATAGAAACCGAGCATCTGAGCAACATG 
TCATTCCTACGGGATTTTCGCCGAGTAGTCGCGCGCGCGGCATTTCGTCTTCTGGCAGACAGGCTGCCAAAG 
CCCAGAAGCACGAAAGAAAGCCTGCACATTCTTGTCCCCCGTTGGGATGCCAAATTGGGCGACTCGATCGTT 
TCGTCTTTCTTCTTTCGTGAGGCTCGCAGACTCAATGCCCGGGTGACCGTGCTGACGGTCGTAGAGCTTGCC 
CAGGCGCACACGCAGGACTTTGGTGTGGATCAGGTCGTGATCACGAACGCCAATCCTGGAGTACTCGAACTT 
CGCCGCTTGGCGCAGCAGCTTGGACAGGTCGATGTCGTGGTGCATCTGGTAGGAAGGATCCAGCCTGCGGAG 
ATCCTGTTTTTGCGACTGCTGCGTCCGACCCGCGTGTACTCACTCGATGACCGTTTACGCTGCGTCAATCGC 
AAGTTCGGTGAAACAACTGCTGGTCTCGACATGGCCGAGCGCTACCGACGTGTACTCATGGACTTGGGTGCA 
AGTATGGTCGATAGGAAGTACATCGTCCCCCTTCCTGACACGATGCCGAACCCCACCCTCGCCCCGAAAATC 
CTACTCAACCCCTACGCCAGCCGCCCAGACAAATGCTTGGCCTTCGACCGATCCGTGAGCTTGCTACACGCC 
ATCGCCGATGCTTATCCAACCCGGTCTGTCGGCATCCTGTGCAGCCCCGCGACCCAAGAGGATGCGCTGCGC 
ATGGAAGTCGCGGTGGCTCGAAGCAACGTGCACGTCGTCCACGGACTGGCATCCCCCAAGGATGTCGCCGGG 
TACATCCGCTGCGCTCAGGTCGTGGTCAGTGTCGACACGGCCATCGTACACATGGCGGTCGGCCTAGAAACA 
AGGCTGGTGGCAATCTACCCAGACGTAGATGGACAAGCCAACCCGTGGCTGCCCCCACCCTCTCCGTTGACC 
CGTGTCGTCTATAGCCAGCAACACCCTGGCCAAATTCGGCGCACCGGCAAAAAGGACATGAATGCATTCTCG 
CTCGAGGCTCTGTTGGACAACCTTCACGAGTTGTTGGCTACTACACCCGAAACTGAACAACTCCATTCGATC 
AGAGCGCGGAAAGTGCCTGGCCTGGGTGCCGCGAATGGAACCCTCGCTCGACAGTTGCCCCTGATCAGCCAG 
GACTTCCCCGAGGTAGCCGACTGTCACCCCGGGACCATAAATTTGGAGCTCGAATGTCCTCTAGAAGTGACG 
CAGCCCGACCATCGCACCGCTCCGCTCGCCTGGACCCCGAGCGGACGGACGACTGAAGTATTCGACTTGGTG 
CGAATTGAGCTCGAGTTCGGCCCGTTACCAACGCGAGTGCCCGCATGGTTGTACGTTGCCCACGGATCCCCT 
CACCGCTGCACACCGACTGTTCATGAGGTGATCGCCCGGCAGTTAAACCTGAGCGAGGTCCGTGAGTGCCAG 
GTTCATCTACGCGCAAGCGCCGTAACACTGGCACGCCCAGATCAACAAACGGCTTCTATCAGCCGCTCGCTT 
TCCCCCAGCCAATAG