ViewGene
Locus Name:
GeneID:
Location:

GeneID:7068
TrivialName: PA14_03270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03270
PAO1 Ortholog Locus:
Sequence Length:3138
Protein Length:1045
Start: 294101
Stop: 297238
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69294.1|AE016566_5 (AE016787) hypothetical protein [Pseudomonas putida KT2440]
Identities = 346/640 (54%), Positives = 451/640 (70%)
Sequence:
ATGACCTTGCTGTGCGCCAATCCGCGCTACAACCTGGCATCCACGGGCGGGCATGAAAGCGACCGCGATCTG
GTGTCCTATGTGCGCGGCGTCACCGGCCCCGGGGACGGAGGTGTAGAGCAATCTCATATCGCGCGCCAGGGT
AAGACTGTCACCGCCATTGCCGCCACGCTCGAGCGTGACGGTGCGCAGGTTCGACTGGGCGCTGTGCTCTGG
TTCGAGGGCACCAGCTCCTCGGCGTCCGATCTGAAAAAACTTTGGCTGTTAAGCGAGTCCCCCGAGCAGACG
CTGGAGCACTGGCTCAGCCAGCATCACGCAGGCGGCATGCGGGCTCTGCGTCAGATGGAGAAGGATGGGATG
GGGATCTGGCCGTATCCCAGCAAGAAAGCCTTCCTGGCCAGGCTGAGGGATTACTTCGAGGTCGGTGAAAAC
GCTTTCACCTTGCTCAACCGCGCTGCCGGCCTGAAGCAGCTCAACAGTATTGATGAGATCTTTCGAGAGCTG
GTACTGGATGACCGCTCCGCCTTCGAGCGGGCTGCCGAGGTCGCCAGCAGCTTCGATGATCTAACTGACATC
CACCGAGAACTGGAAACCGCTAGAAAGCAGCAGCGCTCGTTGCAACCTGTCGCCGATGGCTGGGAACGTTAT
AGGGCCTTGCAAGAACAGTTGCAGGATAAACAAGCGCTCGAAGGCATCCTCCCGGTCTGGTTCGCCGAGCAG
GGGTATCGTCTGTGGTTGGCTGAAACCAACAGGCTTGAGAAGGAGCACAAACAGGCCGAACTGGATCAGGCG
CAATGCAGGAGTCAGCTTGAGATCCAGAAGGGCGTGGTCGATCAACATCGTCAGCGCTACCTGCGAGTAGGG
GGCGCAGGGATAGATCAATTACGCGGGCGCATTGCTGATTGGGTCAGGGAGTGCGATAAGCGGCGCCTGAAA
GCCGAGCAATACCAACGCTTGGCCAAGGGGCTTGGACTCGCGGATGAGTTATCGGCCGCTGCGCTCGAAGAA
AATCAGCAGCAGATCGCGGCACGCCTGGAAATACTGGCCCAGCAAACTACAGACGCGCGCCAGAAGGCGTTC
GATGCAGGTCTCGTCCAGCAGGAACTCAATGGCCGCCTGCAGAGCTTACAGCAGGAGCGTGCTGAGGTTGAG
AGACGGCCAGGCTCGAACCTGCCCGGGCATTTTCATGCTTTTCGAGGTGATCTGGCGCAGGAGCTTGGCGTC
GATGAGTCGGCCCTGCCTTTCGTTGCCGAGCTGGTGCAGGTCAAGCCCGAGGAGCTGGCCTGGCGGGGTGCC
ATCGAGCGGGCAATCGGTAGCCACCGGCTCCGGATCTTGGTGCCGCAGGGCTCATCCCAGGCCGCACTGCGT
TGGGTGAACCAACGGCACAACCGCTTGCATGTGCGCTTGTTGGAGGTAAAAGAGCCGTCGTCGCGCCCCGTT
TTCTTCGACGATGGCTTTACCCGCAAGCTGACCTTCAAGGAGCATCCGTACCGAGAAGCCGTAAAGGCACTA
CTGGCGGACAATGACCGCCACTGCGTCGAAAGCACGGAGCAATTGCGTCATACCCCTCACGCCATGACGGCC
CAAGGGCTGATGTCGGGTAAAGAACGCTTCTTCGACAAGCAGGACCAGAAGCGCCTGGATGAAGACTGGCTG
ACCGGCTTCGATAACCGCGACCGTCTGGCCTTCTTGGCTGAGCAGATTCGCGAGGTCAATGAACAGCTCGTG
CCCGCCAAGCTGGCCCTGGATGCTGCCCAGGGCGATGTCGGTCAATTGGAGAGTCAAGCTTCGCTGCTGCAA
CGCATCGAAGAGCTGCAGTTCGACGATATTGATCGGCCGGGCGCCGAGCGTCAGCTGCAGTCGCTGCGTACT
CAGCTGGACACCCTGACGCGTCCCGATTCTAACCTTGCCGTGATCAAAGCCGAGCTGGATCAAGCCGAGGCC
CTGCGGGAGTCTCTGGACCAACAGCTGCAACGACTGATTGAGCAGTGTGTGCAGTTGAAAACTCAATTTGAC
CAAGCCGCATCTGCTACCCGTAAGGCCTATCGCGGCGCCGAAAAGGGGCTGAGCGATACACAGCGTGAACTG
GCGCAAGCGCATTTCCCGATCCTGAGCACGGATGACCTCGGCGATATTGACGAGCTGGAACGCAAGCATACG
CGTGAGCTTCAAGGGCAACTCAAAACGCTCGGCGAGAAACTGGGCGACCAGAAAACAGAGCTTGCCAAACGT
ATGTCCGACGCCCTGAAAGCAGACACCGGGGCGCTTGCAGAGGTCGGGCGAGAACTGGTGGATGTACCCAGG
TATCTGGAGCGTCTCCGTGTGCTGACCGAGGAAGCCCTGCCCGAGAAACTCAAGCGCTTCCTGGAATACCTC
AATCGCTCCTCGGATGACGGTGTCACCCAGCTGCTCAGCTATATCGACCATGAGGTCTCGATGATCGAGGAG
CGCCTGGATGACCTGAACAGTACGATGCAGCGTGTCGACTTTCAGCCCGGACGCTATCTGCGCCTGGTGGCG
AAAAAGGTCATTCATGAAAGCCTGCGCACCTTGCAACACGCTCAGCGCCAACTGAACTCGGCGCGCTTCATC
GATGATGAAGGCGAGAGCCATTACAAGGCATTGCAGGCGCTCGTTGGCCTGCTCAAGGATGCCTGCGAACAC
AGCAGGAATCAGGGGGCCAAGGCACTGCTGGATCCGCGCTTCCGCCTGGAGTTCGCGGTATCGGTGATCGAT
CGGGAAGGCAATAATCTCATCGAAACCCGGACAGGTTCTCAGGGCGGTAGCGGTGGCGAGAAGGAGATCATC
GCCTCCTATGTACTGACCGCTTCCCTGAGCTATGCGCTCTGTCCCGATGGCAGCAGCCGGCCGTTGTTCGGC
ACCATCGTGCTCGACGAGGCGTTCTCGCGCAGCTCCCATGCGGTGGCCGGTCGGATCATCGCAGCGCTGAGG
GAGTTCGGCCTGCACGCTGTCTTCATCACCCCCAACAAGGAAATGCGCCTGTTGCGCCACCATACGCGTTCG
GCAGTCGTCGTTCATCGGCGCGGCGTGGAATCCAGTCTGGTTTCCCTGAGCTGGGAAGCGTTGGATGAGCAT
CATCAACAGCGCATCAGGGCCATGCATGAAGTCGCCCACTGA
Translation:
MTLLCANPRYNLASTGGHESDRDLVSYVRGVTGPGDGGVEQSHIARQGKTVTAIAATLERDGAQVRLGAVLW
FEGTSSSASDLKKLWLLSESPEQTLEHWLSQHHAGGMRALRQMEKDGMGIWPYPSKKAFLARLRDYFEVGEN
AFTLLNRAAGLKQLNSIDEIFRELVLDDRSAFERAAEVASSFDDLTDIHRELETARKQQRSLQPVADGWERY
RALQEQLQDKQALEGILPVWFAEQGYRLWLAETNRLEKEHKQAELDQAQCRSQLEIQKGVVDQHRQRYLRVG
GAGIDQLRGRIADWVRECDKRRLKAEQYQRLAKGLGLADELSAAALEENQQQIAARLEILAQQTTDARQKAF
DAGLVQQELNGRLQSLQQERAEVERRPGSNLPGHFHAFRGDLAQELGVDESALPFVAELVQVKPEELAWRGA
IERAIGSHRLRILVPQGSSQAALRWVNQRHNRLHVRLLEVKEPSSRPVFFDDGFTRKLTFKEHPYREAVKAL
LADNDRHCVESTEQLRHTPHAMTAQGLMSGKERFFDKQDQKRLDEDWLTGFDNRDRLAFLAEQIREVNEQLV
PAKLALDAAQGDVGQLESQASLLQRIEELQFDDIDRPGAERQLQSLRTQLDTLTRPDSNLAVIKAELDQAEA
LRESLDQQLQRLIEQCVQLKTQFDQAASATRKAYRGAEKGLSDTQRELAQAHFPILSTDDLGDIDELERKHT
RELQGQLKTLGEKLGDQKTELAKRMSDALKADTGALAEVGRELVDVPRYLERLRVLTEEALPEKLKRFLEYL
NRSSDDGVTQLLSYIDHEVSMIEERLDDLNSTMQRVDFQPGRYLRLVAKKVIHESLRTLQHAQRQLNSARFI
DDEGESHYKALQALVGLLKDACEHSRNQGAKALLDPRFRLEFAVSVIDREGNNLIETRTGSQGGSGGEKEII
ASYVLTASLSYALCPDGSSRPLFGTIVLDEAFSRSSHAVAGRIIAALREFGLHAVFITPNKEMRLLRHHTRS
AVVVHRRGVESSLVSLSWEALDEHHQQRIRAMHEVAH*
AnnotationID:7068GeneID:7068
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 17:05:31
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4913
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67088595|gb|EAM08061.1|  similar to Uncharacterized protein conserved in bacteria [Azotobacter vinelandii AvOP]
     Length=1101
     Score = 1910 bits (4948),  Expect = 0.0
     Identities = 970/1045 (92%), Positives = 1005/1045 (96%), Gaps = 0/1045 (0%)

gi|26990405|ref|NP_745830.1|  hypothetical protein PP3697 [Pseudomonas putida KT2440]
     Length=694
     Score =  686 bits (1769),  Expect = 0.0
     Identities = 346/640 (54%), Positives = 451/640 (70%), Gaps = 0/640 (0%)

gi|22127657|ref|NP_671080.1|  hypothetical protein y3786 [Yersinia pestis KIM]
gi|45438386|gb|AAS63933.1|  ATPase involved in DNA repair [Yersinia pestis biovar Medievalis str. 91001]
     Length=462
     Score =  613 bits (1580),  Expect = 1e-173
     Identities = 310/455 (68%), Positives = 376/455 (82%), Gaps = 0/455 (0%)

gi|16120730|ref|NP_404043.1|  hypothetical protein YPO0396 [Yersinia pestis CO92]
     Length=470
     Score =  613 bits (1580),  Expect = 1e-173
     Identities = 310/455 (68%), Positives = 376/455 (82%), Gaps = 0/455 (0%)

gi|37524134|ref|NP_927478.1|  hypothetical protein plu0108 [Photorhabdus luminescens subsp. laumondii TTO1]
     Length=1133
     Score =  462 bits (1188),  Expect = 4e-128
     Identities = 308/1043 (29%), Positives = 518/1043 (49%), Gaps = 31/1043 (2%)

gi|26990404|ref|NP_745829.1|  hypothetical protein PP3696 [Pseudomonas putida KT2440]
     Length=406
     Score =  449 bits (1155),  Expect = 3e-124
     Identities = 232/384 (60%), Positives = 295/384 (76%), Gaps = 0/384 (0%)






 
Structural Features:
COG4913, Uncharacterized protein conserved in bacteria [Function unknown].
             CD-Length = 1104 residues,  93.8% aligned
             Score =  528 bits (1360), Expect = 2e-150






   
Genomic Context:






   
Comment:


















    ReferenceID:13802




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31209




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7068
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203108
                           gb|AAN69294.1|AE016566_5
                           (AE016787) hypothetical protein [Pseudomonas putida KT2440]
                           1099
                           31.93
                           41.40
                           459
                           1770.0
     

     
     
203109
                           gb|AAM87331.1|AE013981_10
                           (AE013981) hypothetical [Yersinia pestis KIM]
                           1045
                           29.85
                           36.55
                           583
                           1578.0
     

     
     
203110
                           emb|CAC89254.1|
                           (AJ414142) hypothetical protein [Yersinia pestis CO92]
                           1049
                           29.83
                           36.70
                           583
                           1573.0
     

     
     
203111
                           gb|AAN69293.1|AE016566_4
                           (AE016787) hypothetical protein [Pseudomonas putida KT2440]
                           1056
                           22.15
                           28.03
                           661
                           1139.0
     

     






      

          
GC ORFID: 50070How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6095442Stop: 6098579

          
Length: 3138


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGACCTTGCTGTGCGCCAATCCGCGCTACAACCTGGCATCCACGGGCGGGCATGAAAGCGACCGCGATCTG 
GTGTCCTATGTGCGCGGCGTCACCGGCCCCGGGGACGGAGGTGTAGAGCAATCTCATATCGCGCGCCAGGGT 
AAGACTGTCACCGCCATTGCCGCCACGCTCGAGCGTGACGGTGCGCAGGTTCGACTGGGCGCTGTGCTCTGG 
TTCGAGGGCACCAGCTCCTCGGCGTCCGATCTGAAAAAACTTTGGCTGTTAAGCGAGTCCCCCGAGCAGACG 
CTGGAGCACTGGCTCAGCCAGCATCACGCAGGCGGCATGCGGGCTCTGCGTCAGATGGAGAAGGATGGGATG 
GGGATCTGGCCGTATCCCAGCAAGAAAGCCTTCCTGGCCAGGCTGAGGGATTACTTCGAGGTCGGTGAAAAC 
GCTTTCACCTTGCTCAACCGCGCTGCCGGCCTGAAGCAGCTCAACAGTATTGATGAGATCTTTCGAGAGCTG 
GTACTGGATGACCGCTCCGCCTTCGAGCGGGCTGCCGAGGTCGCCAGCAGCTTCGATGATCTAACTGACATC 
CACCGAGAACTGGAAACCGCTAGAAAGCAGCAGCGCTCGTTGCAACCTGTCGCCGATGGCTGGGAACGTTAT 
AGGGCCTTGCAAGAACAGTTGCAGGATAAACAAGCGCTCGAAGGCATCCTCCCGGTCTGGTTCGCCGAGCAG 
GGGTATCGTCTGTGGTTGGCTGAAACCAACAGGCTTGAGAAGGAGCACAAACAGGCCGAACTGGATCAGGCG 
CAATGCAGGAGTCAGCTTGAGATCCAGAAGGGCGTGGTCGATCAACATCGTCAGCGCTACCTGCGAGTAGGG 
GGCGCAGGGATAGATCAATTACGCGGGCGCATTGCTGATTGGGTCAGGGAGTGCGATAAGCGGCGCCTGAAA 
GCCGAGCAATACCAACGCTTGGCCAAGGGGCTTGGACTCGCGGATGAGTTATCGGCCGCTGCGCTCGAAGAA 
AATCAGCAGCAGATCGCGGCACGCCTGGAAATACTGGCCCAGCAAACTACAGACGCGCGCCAGAAGGCGTTC 
GATGCAGGTCTCGTCCAGCAGGAACTCAATGGCCGCCTGCAGAGCTTACAGCAGGAGCGTGCTGAGGTTGAG 
AGACGGCCAGGCTCGAACCTGCCCGGGCATTTTCATGCTTTTCGAGGTGATCTGGCGCAGGAGCTTGGCGTC 
GATGAGTCGGCCCTGCCTTTCGTTGCCGAGCTGGTGCAGGTCAAGCCCGAGGAGCTGGCCTGGCGGGGTGCC 
ATCGAGCGGGCAATCGGTAGCCACCGGCTCCGGATCTTGGTGCCGCAGGGCTCATCCCAGGCCGCACTGCGT 
TGGGTGAACCAACGGCACAACCGCTTGCATGTGCGCTTGTTGGAGGTAAAAGAGCCGTCGTCGCGCCCCGTT 
TTCTTCGACGATGGCTTTACCCGCAAGCTGACCTTCAAGGAGCATCCGTACCGAGAAGCCGTAAAGGCACTA 
CTGGCGGACAATGACCGCCACTGCGTCGAAAGCACGGAGCAATTGCGTCATACCCCTCACGCCATGACGGCC 
CAAGGGCTGATGTCGGGTAAAGAACGCTTCTTCGACAAGCAGGACCAGAAGCGCCTGGATGAAGACTGGCTG 
ACCGGCTTCGATAACCGCGACCGTCTGGCCTTCTTGGCTGAGCAGATTCGCGAGGTCAATGAACAGCTCGTG 
CCCGCCAAGCTGGCCCTGGATGCTGCCCAGGGCGATGTCGGTCAATTGGAGAGTCAAGCTTCGCTGCTGCAA 
CGCATCGAAGAGCTGCAGTTCGACGATATTGATCGGCCGGGCGCCGAGCGTCAGCTGCAGTCGCTGCGTACT 
CAGCTGGACACCCTGACGCGTCCCGATTCTAACCTTGCCGTGATCAAAGCCGAGCTGGATCAAGCCGAGGCC 
CTGCGGGAGTCTCTGGACCAACAGCTGCAACGACTGATTGAGCAGTGTGTGCAGTTGAAAACTCAATTTGAC 
CAAGCCGCATCTGCTACCCGTAAGGCCTATCGCGGCGCCGAAAAGGGGCTGAGCGATACACAGCGTGAACTG 
GCGCAAGCGCATTTCCCGATCCTGAGCACGGATGACCTCGGCGATATTGACGAGCTGGAACGCAAGCATACG 
CGTGAGCTTCAAGGGCAACTCAAAACGCTCGGCGAGAAACTGGGCGACCAGAAAACAGAGCTTGCCAAACGT 
ATGTCCGACGCCCTGAAAGCAGACACCGGGGCGCTTGCAGAGGTCGGGCGAGAACTGGTGGATGTACCCAGG 
TATCTGGAGCGTCTCCGTGTGCTGACCGAGGAAGCCCTGCCCGAGAAACTCAAGCGCTTCCTGGAATACCTC 
AATCGCTCCTCGGATGACGGTGTCACCCAGCTGCTCAGCTATATCGACCATGAGGTCTCGATGATCGAGGAG 
CGCCTGGATGACCTGAACAGTACGATGCAGCGTGTCGACTTTCAGCCCGGACGCTATCTGCGCCTGGTGGCG 
AAAAAGGTCATTCATGAAAGCCTGCGCACCTTGCAACACGCTCAGCGCCAACTGAACTCGGCGCGCTTCATC 
GATGATGAAGGCGAGAGCCATTACAAGGCATTGCAGGCGCTCGTTGGCCTGCTCAAGGATGCCTGCGAACAC 
AGCAGGAATCAGGGGGCCAAGGCACTGCTGGATCCGCGCTTCCGCCTGGAGTTCGCGGTATCGGTGATCGAT 
CGGGAAGGCAATAATCTCATCGAAACCCGGACAGGTTCTCAGGGCGGTAGCGGTGGCGAGAAGGAGATCATC 
GCCTCCTATGTACTGACCGCTTCCCTGAGCTATGCGCTCTGTCCCGATGGCAGCAGCCGGCCGTTGTTCGGC 
ACCATCGTGCTCGACGAGGCGTTCTCGCGCAGCTCCCATGCGGTGGCCGGTCGGATCATCGCAGCGCTGAGG 
GAGTTCGGCCTGCACGCTGTCTTCATCACCCCCAACAAGGAAATGCGCCTGTTGCGCCACCATACGCGTTCG 
GCAGTCGTCGTTCATCGGCGCGGCGTGGAATCCAGTCTGGTTTCCCTGAGCTGGGAAGCGTTGGATGAGCAT 
CATCAACAGCGCATCAGGGCCATGCATGAAGTCGCCCACTGA