ViewGene
Locus Name:
GeneID:
Location:

GeneID:7066
TrivialName: PA14_03250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03250
PAO1 Ortholog Locus:
Sequence Length:1617
Protein Length:538
Start: 291568
Stop: 293184
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN69295.1|AE016566_6 (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 309/499 (61%), Positives = 389/499 (77%)
Sequence:
ATGGCGCAGGCTATTCCGGCGATTGAACAGGCCCATCCGCCAGGACAAATACGTATCATGAGGCCACGACTG
ACTTCGGTAGTCTCGTGCTGGGACTACCTTTGGAAAGTGGCCGCCATGGAAGAAAGCGCACAACAACGCTCG
GAACGTTATGTCTCCGCCCGCAGCCAACACCCTGCCTGGCTTTTGCTCGCATCACGCCGAGCGCCGCTTGTG
TTGGGTTGCCTGCGAACGCTGTTCGAGCGGGCGCATGATGGGATCCCCATGGAGGATGCGCTGCAAGCGCTG
TCCGAAATGCTGGCTGCTTATGCCAGCCAGGAGCTCTACGAGATCGACCCGGATGCAACGCATCTCCAAGCA
GGTCGTGAACTTCGTGAATGGATCAAGCGGCGCCTCGTCGTAGAACGAGAGGGGCGTATCTACGCAACCGAC
GCGCTGGAGTCCGCCATCCAGTTCGTCGACTCGCTGGATAGTCGGATCATGACCTCCACGGCATCTCGCCTT
TCGGTGGTCCAGCGCGAGATTGAAAACCTGGAAACGGGTCTGAACCCCAGCCCAACTGGCCGTATTGCCAGC
CTGCGCCGCAGAATCCAGGATTTGGAGCACGAGCTGGCGCGGGTAGAGGCCGGCCATGTCGACGTGCTGGAT
GAAGCGCAGGCGATAGAGGGCATGCGCGAGGTATATAACCTGGCCACCAGCCTGCGCGCAGACTTTCGACGA
GTTGAAGACTCTTGGCGCGAGGCGGATCGCGCCCTTCGACACTCCATCATCAGTGAGCAGTCTCACCGTGGA
GAAATCGTCGATCGATTGCTGGATGGTCAAGATGCTCTACTCAACACACCGGAAGGGCGTGTGTTTGAAAGC
TTCCAGCAGCAACTGAGGCAGTCCGCTGAGCTGGAGGTCATGCGTGAGCGCTTGCGCACCATCCTTCGTCAT
CCTGCGGTTCCAAAGGCGCTGAATCGTCCCCAGCAACGTGAGCTACGTTGGCTGGCGTTACGCCTAGTTCGT
GAGTCGCAGGCTGTGCTCCAGGCGCGCGCCCGAAGCGAGCGCGATGTCCGCGGCTTCATGAAAACGGGGCTG
GCCGCCGAGCATCATCGCGTCGGACAGTTACTCAACGACTTCTTCAATCTAGCGCTCAGCGTCGACTGGCAA
CGTCAGTCAGAGCGCCGTAAGCCTGCCTGTTTACCACCGGTTGGCGTAGCCATTACCGGTGTCCCGGCAATC
GAGCGTCTCCGCTTCAAGACTCTGGATGACGATGATGCGGGCGAGCTGGATCTGAGTTTGAAGCCTGCGGGG
TTGGAGCAGATTGATGATGACTTCTGGGATGCCTTCGACGGGCTGGATCGTGAAGCGCTGATTCATGACACC
CTGGCTGTGCTGGTGGAGCAGGGGCGCCCTGTGAGTCTCGGGGAGCTTGCGTCTTTGCTTCCACCTGCTCAC
GACCTGGAAACCTTTGCGCTCTGGTTGGCGATGGCGCGTGAGGCAGGTATCGAGGTGCTGACAGAGGAGCGT
CAGTTCGTGGAGCTAGTTGACGAGGATGAGCAACGCTGGGGCTTCAATCTGCCTTATGTCGGACTCGACCAC
GAGGCACTCAAGGACATCGATTGGGAGTTGTGA
Translation:
MAQAIPAIEQAHPPGQIRIMRPRLTSVVSCWDYLWKVAAMEESAQQRSERYVSARSQHPAWLLLASRRAPLV
LGCLRTLFERAHDGIPMEDALQALSEMLAAYASQELYEIDPDATHLQAGRELREWIKRRLVVEREGRIYATD
ALESAIQFVDSLDSRIMTSTASRLSVVQREIENLETGLNPSPTGRIASLRRRIQDLEHELARVEAGHVDVLD
EAQAIEGMREVYNLATSLRADFRRVEDSWREADRALRHSIISEQSHRGEIVDRLLDGQDALLNTPEGRVFES
FQQQLRQSAELEVMRERLRTILRHPAVPKALNRPQQRELRWLALRLVRESQAVLQARARSERDVRGFMKTGL
AAEHHRVGQLLNDFFNLALSVDWQRQSERRKPACLPPVGVAITGVPAIERLRFKTLDDDDAGELDLSLKPAG
LEQIDDDFWDAFDGLDREALIHDTLAVLVEQGRPVSLGELASLLPPAHDLETFALWLAMAREAGIEVLTEER
QFVELVDEDEQRWGFNLPYVGLDHEALKDIDWEL*
AnnotationID:7066GeneID:7066
AnnotatorUID: danlee
Modification Date/Time: 2005-10-04 17:05:28
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|67088597|gb|EAM08063.1|  conserved hypothetical protein [Azotobacter vinelandii AvOP]
     Length=450
     Score =  840 bits (2169),  Expect = 0.0
     Identities = 430/450 (95%), Positives = 435/450 (96%), Gaps = 0/450 (0%)

gi|26990406|ref|NP_745831.1|  hypothetical protein PP3698 [Pseudomonas putida KT2440]
     Length=499
     Score =  619 bits (1595),  Expect = 1e-175
     Identities = 309/499 (61%), Positives = 389/499 (77%), Gaps = 0/499 (0%)

gi|37524132|ref|NP_927476.1|  hypothetical protein plu0106 [Photorhabdus luminescens subsp. laumondii TTO1]
     Length=486
     Score =  189 bits (481),  Expect = 2e-46
     Identities = 147/486 (30%), Positives = 233/486 (47%), Gaps = 17/486 (3%)







 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:13799




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31205




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7066
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203107
                           gb|AAN69295.1|AE016566_6
                           (AE016787) conserved hypothetical protein [Pseudomonas putida KT2440]
                           538
                           57.43
                           72.30
                           39
                           1595.0
     

     






      

          
GC ORFID: 50068How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 6092909Stop: 6094525

          
Length: 1617


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGCGCAGGCTATTCCGGCGATTGAACAGGCCCATCCGCCAGGACAAATACGTATCATGAGGCCACGACTG 
ACTTCGGTAGTCTCGTGCTGGGACTACCTTTGGAAAGTGGCCGCCATGGAAGAAAGCGCACAACAACGCTCG 
GAACGTTATGTCTCCGCCCGCAGCCAACACCCTGCCTGGCTTTTGCTCGCATCACGCCGAGCGCCGCTTGTG 
TTGGGTTGCCTGCGAACGCTGTTCGAGCGGGCGCATGATGGGATCCCCATGGAGGATGCGCTGCAAGCGCTG 
TCCGAAATGCTGGCTGCTTATGCCAGCCAGGAGCTCTACGAGATCGACCCGGATGCAACGCATCTCCAAGCA 
GGTCGTGAACTTCGTGAATGGATCAAGCGGCGCCTCGTCGTAGAACGAGAGGGGCGTATCTACGCAACCGAC 
GCGCTGGAGTCCGCCATCCAGTTCGTCGACTCGCTGGATAGTCGGATCATGACCTCCACGGCATCTCGCCTT 
TCGGTGGTCCAGCGCGAGATTGAAAACCTGGAAACGGGTCTGAACCCCAGCCCAACTGGCCGTATTGCCAGC 
CTGCGCCGCAGAATCCAGGATTTGGAGCACGAGCTGGCGCGGGTAGAGGCCGGCCATGTCGACGTGCTGGAT 
GAAGCGCAGGCGATAGAGGGCATGCGCGAGGTATATAACCTGGCCACCAGCCTGCGCGCAGACTTTCGACGA 
GTTGAAGACTCTTGGCGCGAGGCGGATCGCGCCCTTCGACACTCCATCATCAGTGAGCAGTCTCACCGTGGA 
GAAATCGTCGATCGATTGCTGGATGGTCAAGATGCTCTACTCAACACACCGGAAGGGCGTGTGTTTGAAAGC 
TTCCAGCAGCAACTGAGGCAGTCCGCTGAGCTGGAGGTCATGCGTGAGCGCTTGCGCACCATCCTTCGTCAT 
CCTGCGGTTCCAAAGGCGCTGAATCGTCCCCAGCAACGTGAGCTACGTTGGCTGGCGTTACGCCTAGTTCGT 
GAGTCGCAGGCTGTGCTCCAGGCGCGCGCCCGAAGCGAGCGCGATGTCCGCGGCTTCATGAAAACGGGGCTG 
GCCGCCGAGCATCATCGCGTCGGACAGTTACTCAACGACTTCTTCAATCTAGCGCTCAGCGTCGACTGGCAA 
CGTCAGTCAGAGCGCCGTAAGCCTGCCTGTTTACCACCGGTTGGCGTAGCCATTACCGGTGTCCCGGCAATC 
GAGCGTCTCCGCTTCAAGACTCTGGATGACGATGATGCGGGCGAGCTGGATCTGAGTTTGAAGCCTGCGGGG 
TTGGAGCAGATTGATGATGACTTCTGGGATGCCTTCGACGGGCTGGATCGTGAAGCGCTGATTCATGACACC 
CTGGCTGTGCTGGTGGAGCAGGGGCGCCCTGTGAGTCTCGGGGAGCTTGCGTCTTTGCTTCCACCTGCTCAC 
GACCTGGAAACCTTTGCGCTCTGGTTGGCGATGGCGCGTGAGGCAGGTATCGAGGTGCTGACAGAGGAGCGT 
CAGTTCGTGGAGCTAGTTGACGAGGATGAGCAACGCTGGGGCTTCAATCTGCCTTATGTCGGACTCGACCAC 
GAGGCACTCAAGGACATCGATTGGGAGTTGTGA