ViewGene
Locus Name:
GeneID:
Location:

GeneID:706
TrivialName: PA14_52980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52980
PAO1 Ortholog Locus:PA0873
Sequence Length:1560
Protein Length:519
Start: 4697912
Stop: 4696353
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04262.1|AE004522_4 (AE004522) transcriptional regulator PhhR [Pseudomonas aeruginosa PAO1]
Identities = 518/519 (99%), Positives = 518/519 (99%)
Sequence:
ATGCGTATCAAAGTGCACTGCCAGAACCGTGTAGGCATCCTCCGCGACATCCTCAACCTGCTGGTCGACTAC
GGCATCAACGTCAATCGCGGCGAAGTCGGCGGCGACCAGGGCAACGCCATCTACCTGCTCTGTCCGAACATG
ATCAACCTCCAGTTGCAGTCGCTGCGGCCCAAGCTGGAGGCGGTGCCGGGGGTCTTCGGGGTCAAGCGCGTC
GGCCTGATGCCCAGCGAGCGCCGGCACCTGGAACTCAACGCGCTGCTCGCCGCCCTGGACTTCCCGGTGCTC
TCGGTGGACATGGGCGGGCAGATCGTCGCCGCCAACCGTGCCGCCGCGCAATTGCTCGGCGTGCGCGTCGAC
GAGGTGCCGGGGATTCCGCTGTCGCGCTATGTCGAGGACCTCGACCTGCCCGAACTGGTGCGCGCCAACAAG
GCGCGGATCAACGGGCTGCGGGTGAAGGTGAAGGGCGACGTGTTCCTCGCCGACATCGCGCCGCTGCAATCC
GAGCACGACGAGAGCGAGGCGCTGGCTGGAGCGGTGCTGACCCTGCATCGCGCGGATCGCGTCGGCGAGCGC
ATCTACCATGTGCGCAAGCAGGAGCTGCGTGGCTTCGACAGTATCTTCCAGAGTTCGCGGGTAATGGCCGCG
GTGGTCCGCGAGGCGCGGCGCATGGCGCCGCTGGACGCGCCGCTGCTGATCGAGGGCGAGACCGGCACCGGC
AAGGAGCTGCTGGCGCGCGCCTGCCACCTGGCCAGCCCGCGCGGGCAGTCGCCGTTCATGGCGTTGAACTGC
GCCGGCCTGCCGGAATCCATGGCCGAGACCGAGCTGTTCGGCTATGGTCCGGGAGCCTTCGAGGGCGCCCGT
CCGGAAGGCAAGCTCGGCCTGCTGGAGCTTACCGCCGGCGGTACGCTGTTCCTCGACGGCGTCGGCGAGATG
AGCCCGCGCCTGCAGGCCAAGCTGTTGCGCTTCCTGCAGGACGGCTGTTTCCGCCGGGTCGGCAGCGACGAG
GAGGTGTACCTGGACGTGCGGGTGATCTGCGCCACCCAGGTAGACCTGTCCGAACTCTGCGCCAAGGGCGAA
TTCCGCCAGGACCTCTATCACCGTCTCAATGTGCTCTCGCTGCACATCCCGCCGCTGCGCGAGTGCCTGGAT
GGCTTGGCGCCGCTCGCCGAGCATTTCCTCGACCAGGCCAGCCGGCAGATCGGCTGCGGCCTGCCGAAGCTT
TCCGCGCAGGCGCTGGAACGTCTCGAACGCTACCACTGGCCGGGCAACGTGCGGCAATTGGAAAACGTGCTG
TTCCAGGCGGTTTCGCTGTGCGAAGGGGGAACGGTCAAGGCCGAGCACATCCGCCTGCCGGACTACGGCGCA
CCGCAGCCGCTGGGGGATTTTTCCCTGGAAGGAGACCTCGACGCCATCGTCGGGCGCTTCGAGAAGGCGGTG
CTGGAGCGCCTGTTCCGCGAGCATCCGAGCAGCCGCCAGTTGGGCAAGCGCCTCGGCGTTTCGCATACCACG
GCGGCGAACAAGCTGCGCCAGCATGGCGTGGGGCAAGGCGAGGGCTGA
Translation:
MRIKVHCQNRVGILRDILNLLVDYGINVNRGEVGGDQGNAIYLLCPNMINLQLQSLRPKLEAVPGVFGVKRV
GLMPSERRHLELNALLAALDFPVLSVDMGGQIVAANRAAAQLLGVRVDEVPGIPLSRYVEDLDLPELVRANK
ARINGLRVKVKGDVFLADIAPLQSEHDESEALAGAVLTLHRADRVGERIYHVRKQELRGFDSIFQSSRVMAA
VVREARRMAPLDAPLLIEGETGTGKELLARACHLASPRGQSPFMALNCAGLPESMAETELFGYGPGAFEGAR
PEGKLGLLELTAGGTLFLDGVGEMSPRLQAKLLRFLQDGCFRRVGSDEEVYLDVRVICATQVDLSELCAKGE
FRQDLYHRLNVLSLHIPPLRECLDGLAPLAEHFLDQASRQIGCGLPKLSAQALERLERYHWPGNVRQLENVL
FQAVSLCEGGTVKAEHIRLPDYGAPQPLGDFSLEGDLDAIVGRFEKAVLERLFREHPSSRQLGKRLGVSHTT
AANKLRQHGVGQGEG*
AnnotationID:715GeneID:706
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 12:12:15
Gene Name:phhR
Confidence Code:1
GeneProduct:transcriptional regulator PhhR
Cell Localization:()
Synonyms:PA0873, tyrR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3283
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3283, TyrR, Transcriptional regulator of aromatic amino acids metabolism 
[Transcription / Amino acid transport and metabolism]
      CD-Length = 511 residues, 100.0% aligned
      Score =  740 bits (1913), Expect = 0.0






   
Genomic Context:
The first gene of a 4-gene cluster encoding phenylalanine hydroxylase (PhhA),
carbinolamine dehydratase (PhhB), and aromatic aminotransferase (PhhC);
and in the upstream region, a divergently transcribed gene (phhR) encoding an activator protein.






   
Comment:


















    ReferenceID:1415




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31991




  
Author/Investigator(s):
        Song J, Jensen RA.






  
Title:
        PhhR, a divergently transcribed activator of the phenylalanine hydroxylase gene cluster of Pseudomonas aeruginosa.





  
PubMed:
        97093970


MedLine:
        




    
Source:
Mol Microbiol. 1996 Nov;22(3):497-507.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:706
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1204
                           PA0873_tr
                           translation of PA0873
                           519
                           99.80
                           99.80
                           0
                           2652.0
     

     
     
45349
                           gb|AAG04262.1|AE004522_4
                           (AE004522) transcriptional regulator PhhR [Pseudomonas aeruginosa PAO1]
                           519
                           99.80
                           99.80
                           0
                           2652.0
     

     
     
45350
                           gb|AAC44635.1|
                           (U62581) phenylalanine hydroxylase gene cluster transcription activator PhhR [Pseudomonas aeruginosa]
                           519
                           97.49
                           97.88
                           1
                           2578.0
     

     
     
45351
                           gb|AAN70064.1|AE016646_1
                           (AE016790) sigma-54 dependent transcriptional regulator PhhR [Pseudomonas putida KT2440]
                           519
                           87.28
                           93.06
                           0
                           2357.0
     

     
     
45352
                           gb|AAO55342.1|
                           (AE016862) phenylalanine hydroxylase transcriptional activator PhhR [Pseudomonas syringae pv. tomato str. DC3000]
                           521
                           81.95
                           91.17
                           2
                           2232.0
     

     






      

          
GC ORFID: 43708How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0873Glimmer Score: 

          
Start: 255995Stop: 257554

          
Length: 1560


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0873 translation of PA0873Homolog Bit Score 1026.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7804 (ORF: BLASTX 873.0), t_PA2449 (ORF: BLASTX 391.0), t_PA1945 (ORF: BLASTX 202.0), t_PA5511 (ORF: BLASTX 189.0), t_PA1663 (ORF: BLASTX 188.0), psyr_15may02_Scaffold3_revised_gene4481 (ORF: BLASTX 167.0), psyr_15may02_Scaffold3_revised_gene4480 (ORF: BLASTX 162.0), t_PA0873 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTATCAAAGTGCACTGCCAGAACCGTGTAGGCATCCTCCGCGACATCCTCAACCTGCTGGTCGACTAC 
GGCATCAACGTCAATCGCGGCGAAGTCGGCGGCGACCAGGGCAACGCCATCTACCTGCTCTGTCCGAACATG 
ATCAACCTCCAGTTGCAGTCGCTGCGGCCCAAGCTGGAGGCGGTGCCGGGGGTCTTCGGGGTCAAGCGCGTC 
GGCCTGATGCCCAGCGAGCGCCGGCACCTGGAACTCAACGCGCTGCTCGCCGCCCTGGACTTCCCGGTGCTC 
TCGGTGGACATGGGCGGGCAGATCGTCGCCGCCAACCGTGCCGCCGCGCAATTGCTCGGCGTGCGCGTCGAC 
GAGGTGCCGGGGATTCCGCTGTCGCGCTATGTCGAGGACCTCGACCTGCCCGAACTGGTGCGCGCCAACAAG 
GCGCGGATCAACGGGCTGCGGGTGAAGGTGAAGGGCGACGTGTTCCTCGCCGACATCGCGCCGCTGCAATCC 
GAGCACGACGAGAGCGAGGCGCTGGCTGGAGCGGTGCTGACCCTGCATCGCGCGGATCGCGTCGGCGAGCGC 
ATCTACCATGTGCGCAAGCAGGAGCTGCGTGGCTTCGACAGTATCTTCCAGAGTTCGCGGGTAATGGCCGCG 
GTGGTCCGCGAGGCGCGGCGCATGGCGCCGCTGGACGCGCCGCTGCTGATCGAGGGCGAGACCGGCACCGGC 
AAGGAGCTGCTGGCGCGCGCCTGCCACCTGGCCAGCCCGCGCGGGCAGTCGCCGTTCATGGCGTTGAACTGC 
GCCGGCCTGCCGGAATCCATGGCCGAGACCGAGCTGTTCGGCTATGGTCCGGGAGCCTTCGAGGGCGCCCGT 
CCGGAAGGCAAGCTCGGCCTGCTGGAGCTTACCGCCGGCGGTACGCTGTTCCTCGACGGCGTCGGCGAGATG 
AGCCCGCGCCTGCAGGCCAAGCTGTTGCGCTTCCTGCAGGACGGCTGTTTCCGCCGGGTCGGCAGCGACGAG 
GAGGTGTACCTGGACGTGCGGGTGATCTGCGCCACCCAGGTAGACCTGTCCGAACTCTGCGCCAAGGGCGAA 
TTCCGCCAGGACCTCTATCACCGTCTCAATGTGCTCTCGCTGCACATCCCGCCGCTGCGCGAGTGCCTGGAT 
GGCTTGGCGCCGCTCGCCGAGCATTTCCTCGACCAGGCCAGCCGGCAGATCGGCTGCGGCCTGCCGAAGCTT 
TCCGCGCAGGCGCTGGAACGTCTCGAACGCTACCACTGGCCGGGCAACGTGCGGCAATTGGAAAACGTGCTG 
TTCCAGGCGGTTTCGCTGTGCGAAGGGGGAACGGTCAAGGCCGAGCACATCCGCCTGCCGGACTACGGCGCA 
CCGCAGCCGCTGGGGGATTTTTCCCTGGAAGGAGACCTCGACGCCATCGTCGGGCGCTTCGAGAAGGCGGTG 
CTGGAGCGCCTGTTCCGCGAGCATCCGAGCAGCCGCCAGTTGGGCAAGCGCCTCGGCGTTTCGCATACCACG 
GCGGCGAACAAGCTGCGCCAGCATGGCGTGGGGCAAGGCGAGGGCTGA