ViewGene
Locus Name:
GeneID:
Location:

GeneID:705
TrivialName: PA14_53880
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53880
PAO1 Ortholog Locus:PA0801
Sequence Length:1521
Protein Length:506
Start: 4777830
Stop: 4776310
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04190.1|AE004515_6 (AE004515) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 500/506 (98%), Positives = 501/506 (99%)
Sequence:
ATGAACCTGCGTCAATCGATGTCCGGCCTGCATACCTGGTCGGGGCTGCTGGTCAGCTGGCTGCTGTTCGTC
ATCGTCTTCGCCGGCAGCCTGGCCAGCTTCGACAAGGAGCTGACCCGCTGGATGCAGCCGGACCTGCACCTG
CCCGGCGCGCAGTCGCTGGGCGCCGACCAGGTGCGCGACTGGTTGCGCCAGCGCGCCCCCGATGCCCATGCC
TGGTGGATGCTGCCGCCGAGCGAGCGGGCGCCCTACTGGAACGCCGGCTGGGAGCCGCGCGACGGTAGCGAG
TTCAAGGTCTTCCAGCTGGACGCGGTGAGCGGCCAGCCGCTGCCGAAGACGGTCGGCGGCGAGTTCTTCTTC
ACCCTGCACTACGACCTGCACGCCGGCATGGTCGGCCTGTACATCGTCGGCATCGCCGGGATGCTGATGCTG
GTGGCGCTGGTCAGCGGGACCATCGTGCACCGGCGGATCTTCAAGGACTTCTTCACCCTGCGCCCGCAGGCG
GCGCGGCAGCGCGCCTGGCTCGACGCGCACAACGTGCTGGGGGTGATCGGCCTGCCGTTCCACCTGATGATC
GCCTACACCGGCCTGGTGATCTTCATCGTCTACTACATGCAGGCGGGCCTGCAGGTGGTCTACCAGAACGAT
GGCGAGCGCTTCTTCCATGAAGTGCAGGGCTCCTACGAACGCGAGGAAGTCGGCCGCCCGGCGGGGCCGCCG
GCGTCCATCGACGGCCTGATCGTCGAGGCCGGCAAGGTCTGGGCCGACGGCGGCGCGCCGGGCTGGATCAGC
GTCCACCATCCCTATGACGAGGCGGCCACCGTGGACATCCGCCGGCGCGACGCCTCGCGCATCCTCGACGAC
CAGCGCACGGTCAACTTCGATGCCTCCAGCGGCGAACTGCTGCATGCCCAGCCGTCCTATGCGCCCGGCTAC
GCCACCTACGGCTGGCTGACCGGCCTGCACATGATCCAGTGGGGCGGCCAGTTGGTGCGCTGGATGTACCTG
TTGCTCGGGCTGTCCGGGGCGATGATGATCTTCGGCGGGTTGCAGGTCTGGCTGGCCAAGCGCGAGGCTCGC
GGCAGTCGCGGCATTGGTCTGGTGCGGGCGCTGAACCTGGCGGTCTGCGGCGGCCTGCCGCTGGCCAGCCTG
GCGCTGCTGTGGGGCAACCGCCTGCTGCCGACGCAACTGGCCGGCCGCGACACCTGGGAGATCCGCGTGTTT
TGCGCCAGTTGGGCGCTGGTCGCGCTGTGGGCCATCGTCCGCCGCAACAGCGGGACCCTCGGTCGCACGCAA
CTGCGCTTCGCCGCCGTGCTGGCGCTGGGCCTGCCGCTGCTCGGCCTGCTGCGTAGCCCGGAAGGCAACCTG
TTGGCCAGCCTGCAGCGCGGCGACTGGGTGCTGGCCGGCGTCGACCTCAGCCTGCTGGGCCTCGGCCTGCTC
TGCGCCTGGCTCGGCTGGCGACGTCGGCAAGCGTCGAGCAAGCCCGCCCGGCGACGCCTGAACGTCCAGGAG
GTGGCCTGA
Translation:
MNLRQSMSGLHTWSGLLVSWLLFVIVFAGSLASFDKELTRWMQPDLHLPGAQSLGADQVRDWLRQRAPDAHA
WWMLPPSERAPYWNAGWEPRDGSEFKVFQLDAVSGQPLPKTVGGEFFFTLHYDLHAGMVGLYIVGIAGMLML
VALVSGTIVHRRIFKDFFTLRPQAARQRAWLDAHNVLGVIGLPFHLMIAYTGLVIFIVYYMQAGLQVVYQND
GERFFHEVQGSYEREEVGRPAGPPASIDGLIVEAGKVWADGGAPGWISVHHPYDEAATVDIRRRDASRILDD
QRTVNFDASSGELLHAQPSYAPGYATYGWLTGLHMIQWGGQLVRWMYLLLGLSGAMMIFGGLQVWLAKREAR
GSRGIGLVRALNLAVCGGLPLASLALLWGNRLLPTQLAGRDTWEIRVFCASWALVALWAIVRRNSGTLGRTQ
LRFAAVLALGLPLLGLLRSPEGNLLASLQRGDWVLAGVDLSLLGLGLLCAWLGWRRRQASSKPARRRLNVQE
VA*
AnnotationID:714GeneID:705
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 17:05:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0801
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03929, COG3182
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam03929, DUF337, Uncharacterized iron-regulated membrane protein.  Score: 253, 1e-67
COG3182, PiuB, Uncharacterized iron-regulated membrane protein. Score: 249, 1e-66






   
Genomic Context:






   
Comment:


















    ReferenceID:1413




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18555




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:705
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1203
                           PA0801_tr
                           translation of PA0801
                           506
                           98.81
                           99.01
                           0
                           2653.0
     

     
     
45345
                           gb|AAG04190.1|AE004515_6
                           (AE004515) hypothetical protein PA0801 [Pseudomonas aeruginosa PAO1]
                           506
                           98.81
                           99.01
                           0
                           2653.0
     

     
     
45346
                           gb|AAD50523.1|U95728_1
                           (U95728) hypothetical integral membrane protein [Pseudomonas aeruginosa]
                           578
                           44.80
                           48.96
                           209
                           1045.0
     

     
     
45347
                           emb|CAE35577.1|
                           (BX640448) putative iron uptake protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           549
                           38.25
                           53.91
                           48
                           937.0
     

     
     
45348
                           emb|CAE38489.1|
                           (BX640432) putative iron uptake protein [Bordetella parapertussis]
                           549
                           38.25
                           53.91
                           51
                           932.0
     

     






      

          
GC ORFID: 43707How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0801Glimmer Score: 

          
Start: 176077Stop: 177597

          
Length: 1521


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0801 translation of PA0801Homolog Bit Score 1026.0

          
Other Homologs:  t_PA0801 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCTGCGTCAATCGATGTCCGGCCTGCATACCTGGTCGGGGCTGCTGGTCAGCTGGCTGCTGTTCGTC 
ATCGTCTTCGCCGGCAGCCTGGCCAGCTTCGACAAGGAGCTGACCCGCTGGATGCAGCCGGACCTGCACCTG 
CCCGGCGCGCAGTCGCTGGGCGCCGACCAGGTGCGCGACTGGTTGCGCCAGCGCGCCCCCGATGCCCATGCC 
TGGTGGATGCTGCCGCCGAGCGAGCGGGCGCCCTACTGGAACGCCGGCTGGGAGCCGCGCGACGGTAGCGAG 
TTCAAGGTCTTCCAGCTGGACGCGGTGAGCGGCCAGCCGCTGCCGAAGACGGTCGGCGGCGAGTTCTTCTTC 
ACCCTGCACTACGACCTGCACGCCGGCATGGTCGGCCTGTACATCGTCGGCATCGCCGGGATGCTGATGCTG 
GTGGCGCTGGTCAGCGGGACCATCGTGCACCGGCGGATCTTCAAGGACTTCTTCACCCTGCGCCCGCAGGCG 
GCGCGGCAGCGCGCCTGGCTCGACGCGCACAACGTGCTGGGGGTGATCGGCCTGCCGTTCCACCTGATGATC 
GCCTACACCGGCCTGGTGATCTTCATCGTCTACTACATGCAGGCGGGCCTGCAGGTGGTCTACCAGAACGAT 
GGCGAGCGCTTCTTCCATGAAGTGCAGGGCTCCTACGAACGCGAGGAAGTCGGCCGCCCGGCGGGGCCGCCG 
GCGTCCATCGACGGCCTGATCGTCGAGGCCGGCAAGGTCTGGGCCGACGGCGGCGCGCCGGGCTGGATCAGC 
GTCCACCATCCCTATGACGAGGCGGCCACCGTGGACATCCGCCGGCGCGACGCCTCGCGCATCCTCGACGAC 
CAGCGCACGGTCAACTTCGATGCCTCCAGCGGCGAACTGCTGCATGCCCAGCCGTCCTATGCGCCCGGCTAC 
GCCACCTACGGCTGGCTGACCGGCCTGCACATGATCCAGTGGGGCGGCCAGTTGGTGCGCTGGATGTACCTG 
TTGCTCGGGCTGTCCGGGGCGATGATGATCTTCGGCGGGTTGCAGGTCTGGCTGGCCAAGCGCGAGGCTCGC 
GGCAGTCGCGGCATTGGTCTGGTGCGGGCGCTGAACCTGGCGGTCTGCGGCGGCCTGCCGCTGGCCAGCCTG 
GCGCTGCTGTGGGGCAACCGCCTGCTGCCGACGCAACTGGCCGGCCGCGACACCTGGGAGATCCGCGTGTTT 
TGCGCCAGTTGGGCGCTGGTCGCGCTGTGGGCCATCGTCCGCCGCAACAGCGGGACCCTCGGTCGCACGCAA 
CTGCGCTTCGCCGCCGTGCTGGCGCTGGGCCTGCCGCTGCTCGGCCTGCTGCGTAGCCCGGAAGGCAACCTG 
TTGGCCAGCCTGCAGCGCGGCGACTGGGTGCTGGCCGGCGTCGACCTCAGCCTGCTGGGCCTCGGCCTGCTC 
TGCGCCTGGCTCGGCTGGCGACGTCGGCAAGCGTCGAGCAAGCCCGCCCGGCGACGCCTGAACGTCCAGGAG 
GTGGCCTGA