ViewGene

Locus Name:
GeneID:
Location:

GeneID:704
TrivialName: PA14_59580
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59580
PAO1 Ortholog Locus:
Sequence Length:1536
Protein Length:511
Start: 5301889
Stop: 5303424
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84184.1| (AY273869) transposase [Pseudomonas aeruginosa]
Identities = 511/511 (100%), Positives = 511/511 (100%)
Sequence:
ATGACTTCCTCGCCCAACCTTGACCAGATGACCCCGGAACAGCTTCGTGCCTTGGCGGCACAGGCGTTGCAG
TTGCAATCCCAGGTCGAGGCGATGAGCAGGAAAATCCGCAACAATGAAACCCTCATCGAACAGTTCAAGTTC
GAAATCGCTCTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGTTCGGCGCAAGGCAGCTTG
CTGGATGACCTGCTCGACACCGACCTTGAAGCTATCGAGGCCGAGCTGAAACAACTCCTTCCAGCTTCGCCA
CAAGCCGAGCCACGGCAATCCCCGAAACGTTCGCCATTGCCGCCGCAGTTCCCGCGCACGGTGATTCGCCAC
GAACCTGAAAATACCCAATGCGCCTGCGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTG
GATTACACGCCGGGCGTGTTTACCGTCGAGCAACATGTGAGGGGCAAATGGGCCTGCCGTCAGTGCGAAACC
CTGATCCAGGCGCCGGTGCCAGCCCAGGTTATTGATAAAGGCATCCCGACCGCAGGTTTGTTGGCCCACGTG
ATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACAGACAGGAAAAAATCTTTGGCCGCGCCGGGCTGCCA
ATTGCCCGCTCGACCCTGGCGCAGTGGGTCGGACAAACTGGCGTGCGGCTTCAGCCACTGGTCGATGCACTG
CGTGAAGCCGTGCTGAACCAGGACGTGATCCACGCCGATGAAACACCGGTGCAAATGCTTGCACCAGGCGAG
AAGAAAACCCACCGGGTCTATGTCTGGGCCTACAGCACGACGCCGTTTTCGGCGCTCAAAGCGGTGGTTTAC
GACTTCAGCCCAAGCCGTGCCGGAGAACATGCACGCAACTTCCTAGGCGACTGGAATGGCAAGCTGGTCTGC
GACGACTTCGCTGGATACAAGGCCGGTTTTGAACAAGGCATCACTGAAATCGGCTGCATGGCTCATGCTCGC
CGCAAGTTCTTCGACCTGCATGTCGCTAACAAAAGCCAACTGGCCGAACAGGCGCTGCACTCAATTGGCGGT
TTGTACGAGGTTGAACGCCAGGCTCGGGACATGAGCAACGAAGACCGTTGGCGAATACGTCAGGAAATGGCG
GTACCGATCAGCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACCTGGTGCCCAACGGCTCGGCCACA
GCTAAAGCCCTCGACTACAGCCTGAAACGCTGGGGAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCC
ATCGACAACAATCAGGTGGAGAACCAGATACGGCCGTGGGCGCTCGGACGCTCGAACTGGTTATTTGCCGGA
TCGCTGCGCAGTGGCAAACGAGCAGCAGCTATCATGAGCCTGATCCAGTCCGCTCGCATGAACGGGCATGAT
CCGTATGCCTACCTGAAGGACGTGCTAACTCGCCTGCCGACGTTACGGTCGAAAGACATCAGCCAGTTGCTG
CCGCATCAGTGGGTACAGATCTAG
Translation:
MTSSPNLDQMTPEQLRALAAQALQLQSQVEAMSRKIRNNETLIEQFKFEIALLKRHKFAKRSEQISSAQGSL
LDDLLDTDLEAIEAELKQLLPASPQAEPRQSPKRSPLPPQFPRTVIRHEPENTQCACGCQLQRIGEDVSEKL
DYTPGVFTVEQHVRGKWACRQCETLIQAPVPAQVIDKGIPTAGLLAHVMVAKFADHLPLYRQEKIFGRAGLP
IARSTLAQWVGQTGVRLQPLVDALREAVLNQDVIHADETPVQMLAPGEKKTHRVYVWAYSTTPFSALKAVVY
DFSPSRAGEHARNFLGDWNGKLVCDDFAGYKAGFEQGITEIGCMAHARRKFFDLHVANKSQLAEQALHSIGG
LYEVERQARDMSNEDRWRIRQEMAVPISKTLHDWMLAQRDLVPNGSATAKALDYSLKRWGALTRYLDDGAVP
IDNNQVENQIRPWALGRSNWLFAGSLRSGKRAAAIMSLIQSARMNGHDPYAYLKDVLTRLPTLRSKDISQLL
PHQWVQI*
AnnotationID:713GeneID:704
AnnotatorUID: diggins
Modification Date/Time: 2006-01-29 11:11:03
Gene Name:
Confidence Code:3
GeneProduct:putative transposase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03050,COG3436
Secondary Functional Category(ies):DNA replication, recombination, modification and repair
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70015.1|AE016640_3 (AE016790) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440]
          Length = 511

 Score =  979 bits (2532), Expect = 0.0
 Identities = 486/509 (95%), Positives = 494/509 (97%)

>gb|AAP85912.1| (AY305378) putative transposase protein [Ralstonia eutropha]
          Length = 517

 Score =  343 bits (881), Expect = 1e-93
 Identities = 202/510 (39%), Positives = 287/510 (56%), Gaps = 28/510 (5%)

Structural Features:
pfam03050, Transposase_25, Transposase IS66 family.
CD-Length = 199 residues,  99.0% aligned
Score =  209 bits (534), Expect = 5e-55
Identities = 96/197 (48%), Positives = 130/197 (65%), Gaps = 4/197 (2%)

COG3436, Transposase and inactivated derivatives 
[DNA replication, recombination, and repair].
CD-Length = 157 residues, 100.0% aligned
Score =  110 bits (277), Expect = 3e-25
Identities = 64/161 (39%), Positives = 80/161 (49%), Gaps = 6/161 (3%)
Genomic Context:
Comment:
ReferenceID:1411
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18553
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:38289
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:704_cdd.html
URL:
Homologs By Global Alignment
Gene ID:704

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
45311 gb|AAP84184.1| (AY273869) transposase [Pseudomonas aeruginosa] 511 99.99 99.99 0 2659.0
45312 gb|AAN69575.1|AE016591_3 (AE016788) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440] 511 95.10 96.67 0 2530.0
45313 gb|AAN70015.1|AE016640_3 (AE016790) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440] 511 95.10 96.67 0 2530.0
45314 gb|AAN69102.1|AE016543_11 (AE016787) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440] 511 95.10 96.67 0 2530.0
45316 gb|AAN70960.1|AE016740_3 (AE016794) ISPpu14, transposase Orf3 [Pseudomonas putida KT2440] 511 94.32 96.47 0 2510.0
GC ORFID: 43706How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RL059Glimmer Score:
Start: 4565568Stop: 4567103
Length: 1536
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_RL059 511 Homolog: ORF13 / Putative transposase; recombination-related / P.syringae pv. Maculicola / plasmid pFKN (AAK49546) translation of RL059Homolog Bit Score 1028.0
Other Homologs: psyr_15may02_Scaffold6_revised_gene6664 (ORF: BLASTX 419.0), psyr_15may02_Scaffold10_revised_gene1647 (ORF: BLASTX 325.0), psyr_15may02_Scaffold3_revised_gene4737 (ORF: BLASTX 142.0), t_RL059 (ORF: GLIMMER)
GC ORF Sequence
ATGACTTCCTCGCCCAACCTTGACCAGATGACCCCGGAACAGCTTCGTGCCTTGGCGGCACAGGCGTTGCAG
TTGCAATCCCAGGTCGAGGCGATGAGCAGGAAAATCCGCAACAATGAAACCCTCATCGAACAGTTCAAGTTC
GAAATCGCTCTGCTCAAACGCCACAAGTTTGCCAAGCGCAGCGAGCAAATCAGTTCGGCGCAAGGCAGCTTG
CTGGATGACCTGCTCGACACCGACCTTGAAGCTATCGAGGCCGAGCTGAAACAACTCCTTCCAGCTTCGCCA
CAAGCCGAGCCACGGCAATCCCCGAAACGTTCGCCATTGCCGCCGCAGTTCCCGCGCACGGTGATTCGCCAC
GAACCTGAAAATACCCAATGCGCCTGCGGCTGCCAACTTCAACGCATCGGCGAAGACGTCAGCGAGAAGCTG
GATTACACGCCGGGCGTGTTTACCGTCGAGCAACATGTGAGGGGCAAATGGGCCTGCCGTCAGTGCGAAACC
CTGATCCAGGCGCCGGTGCCAGCCCAGGTTATTGATAAAGGCATCCCGACCGCAGGTTTGTTGGCCCACGTG
ATGGTGGCCAAGTTTGCCGATCACTTGCCGCTGTACAGACAGGAAAAAATCTTTGGCCGCGCCGGGCTGCCA
ATTGCCCGCTCGACCCTGGCGCAGTGGGTCGGACAAACTGGCGTGCGGCTTCAGCCACTGGTCGATGCACTG
CGTGAAGCCGTGCTGAACCAGGACGTGATCCACGCCGATGAAACACCGGTGCAAATGCTTGCACCAGGCGAG
AAGAAAACCCACCGGGTCTATGTCTGGGCCTACAGCACGACGCCGTTTTCGGCGCTCAAAGCGGTGGTTTAC
GACTTCAGCCCAAGCCGTGCCGGAGAACATGCACGCAACTTCCTAGGCGACTGGAATGGCAAGCTGGTCTGC
GACGACTTCGCTGGATACAAGGCCGGTTTTGAACAAGGCATCACTGAAATCGGCTGCATGGCTCATGCTCGC
CGCAAGTTCTTCGACCTGCATGTCGCTAACAAAAGCCAACTGGCCGAACAGGCGCTGCACTCAATTGGCGGT
TTGTACGAGGTTGAACGCCAGGCTCGGGACATGAGCAACGAAGACCGTTGGCGAATACGTCAGGAAATGGCG
GTACCGATCAGCAAAACACTGCATGACTGGATGTTGGCCCAGCGCGACCTGGTGCCCAACGGCTCGGCCACA
GCTAAAGCCCTCGACTACAGCCTGAAACGCTGGGGAGCGCTGACGCGCTACCTGGACGATGGGGCTGTGCCC
ATCGACAACAATCAGGTGGAGAACCAGATACGGCCGTGGGCGCTCGGACGCTCGAACTGGTTATTTGCCGGA
TCGCTGCGCAGTGGCAAACGAGCAGCAGCTATCATGAGCCTGATCCAGTCCGCTCGCATGAACGGGCATGAT
CCGTATGCCTACCTGAAGGACGTGCTAACTCGCCTGCCGACGTTACGGTCGAAAGACATCAGCCAGTTGCTG
CCGCATCAGTGGGTACAGATCTAG