ViewGene

Locus Name:
GeneID:
Location:

GeneID: 7029

TrivialName: PA14_01770

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_01770

PAO1 Ortholog Locus:

Sequence Length: 849

Protein Length: 282

Start: 163261

Stop: 162413

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAN54283.1|AE015565_6 (AE015565) outer membrane protein OmpK, putative [Shewanella oneidensis MR-1] Identities = 107/287 (37%), Positives = 146/287 (50%), Gaps = 19/287 (6%)

Sequence:

ATGCGCAAAGCCCTGCTGTGCTGTGCCGCCCCGCTGTGCGCGGCCGCCGCCTTCGGCGCCGAAAACAACGAC
GAGAACGCCGCCCGCGAAGGGCTCTGGAACAACCTGCACGTCTACCGCGCGTTCAACCAGCGCGGCGGCCCC
TACCTGACCGACGACAGCTACCTGGAATGGGAGTTCGGCGGCCGCAAGGGGGTGCTCGACCTGTACGGCTAC
ATCGACTACAAGAACCTCTTCGACGACGCCAGCTCGGACGTACCCGACGGCGAGAACTGGTTCGTCGACATC
GAGCCGCGTCTCTCCATCGACCGCCTGCTCGGCCGCGACTTCTCCATCGGCCCGATCCGCGAATGGTTCGTC
GCCTTCGACTACTACTACGCCGACGCGCGCCAGGGACCGGGGCTGAACGTGCTGTGGTCGGGCATCGGCACC
AACACCGAGCTGCCCTGGCTGGGTACGGTGGGGCTCAATCTCTACGCGCGCTACATCGACAAGAACTACGGC
GCGTCCAACGAGAACGCCTGGGACGGCTACGTCGCCCACATGAACTGGTTCAAGCCGCTGGCGCAGTTCGGC
GGCAAGCGCTTCATCGCCTTCCAGGGCTTCTTCGACTACGAGTTCGGCTCGAAGCTGCCCGACAAGGACGAT
GCCTTCGAGCGCGAATACCGTACCGATAACGGCTTCCAGGCCTACCTCGGGCTCTGGTATCACACCGAACAC
TGGAAGTTCGGCTACGGCGCCAAGGTCTACCGCAACATGACCCAGTGGCGCGACGGCGAGCAACTGGACGGA
CGCCGCACCGACTCCAGCGGGATCGGCCACTACTTCAACGTCGGCTACGCGTTCTGA

Translation:

MRKALLCCAAPLCAAAAFGAENNDENAAREGLWNNLHVYRAFNQRGGPYLTDDSYLEWEFGGRKGVLDLYGY
IDYKNLFDDASSDVPDGENWFVDIEPRLSIDRLLGRDFSIGPIREWFVAFDYYYADARQGPGLNVLWSGIGT
NTELPWLGTVGLNLYARYIDKNYGASNENAWDGYVAHMNWFKPLAQFGGKRFIAFQGFFDYEFGSKLPDKDD
AFEREYRTDNGFQAYLGLWYHTEHWKFGYGAKVYRNMTQWRDGEQLDGRRTDSSGIGHYFNVGYAF*

AnnotationID:7029 GeneID:7029

AnnotatorUID: danlee

Modification Date/Time: 2005-10-21 12:12:40

Gene Name:

Confidence Code: 3

GeneProduct: putative nucleoside-binding outer membrane protein

Cell Localization: (6) Outer membrane protein

Synonyms:

Cell Localization Confidence Code: 3

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG3248, pfam03502

Secondary Functional Category(ies): cell envelope biogenesis, outer membrane

EC Number:

Status: ACTIVE

Pathway:

Homology:

gi|67521369|gb|EAM25309.1|  Nucleoside-specific channel-forming protein, Tsx [Chromohalobacter salexigens DSM 3043]
gi|67674704|ref|ZP_00471464.1|  Nucleoside-specific channel-forming protein, Tsx [Chromohalobacter salexigens DSM 3043]
     Length=289
     Score =  236 bits (602),  Expect = 6e-61
     Identities = 108/274 (39%), Positives = 165/274 (60%), Gaps = 5/274 (1%)

Structural Features:

COG3248, Tsx, Nucleoside-binding outer membrane protein [Cell envelope biogenesis, outer membrane].
             CD-Length = 284 residues,  91.2% aligned
             Score =  141 bits (356), Expect = 1e-34

pfam03502, Channel_Tsx, Nucleoside-specific channel-forming protein, Tsx.
             CD-Length = 151 residues,  99.3% aligned
             Score =  103 bits (258), Expect = 2e-23

Genomic Context:

Comment:

ReferenceID:13733

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31132

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:33499

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 7029_cdd.html

URL:

GC ORFID: `50031`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5964600`	Stop: `5963752`
Length: `849`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGCAAAGCCCTGCTGTGCTGTGCCGCCCCGCTGTGCGCGGCCGCCGCCTTCGGCGCCGAAAACAACGAC GAGAACGCCGCCCGCGAAGGGCTCTGGAACAACCTGCACGTCTACCGCGCGTTCAACCAGCGCGGCGGCCCC TACCTGACCGACGACAGCTACCTGGAATGGGAGTTCGGCGGCCGCAAGGGGGTGCTCGACCTGTACGGCTAC ATCGACTACAAGAACCTCTTCGACGACGCCAGCTCGGACGTACCCGACGGCGAGAACTGGTTCGTCGACATC GAGCCGCGTCTCTCCATCGACCGCCTGCTCGGCCGCGACTTCTCCATCGGCCCGATCCGCGAATGGTTCGTC GCCTTCGACTACTACTACGCCGACGCGCGCCAGGGACCGGGGCTGAACGTGCTGTGGTCGGGCATCGGCACC AACACCGAGCTGCCCTGGCTGGGTACGGTGGGGCTCAATCTCTACGCGCGCTACATCGACAAGAACTACGGC GCGTCCAACGAGAACGCCTGGGACGGCTACGTCGCCCACATGAACTGGTTCAAGCCGCTGGCGCAGTTCGGC GGCAAGCGCTTCATCGCCTTCCAGGGCTTCTTCGACTACGAGTTCGGCTCGAAGCTGCCCGACAAGGACGAT GCCTTCGAGCGCGAATACCGTACCGATAACGGCTTCCAGGCCTACCTCGGGCTCTGGTATCACACCGAACAC TGGAAGTTCGGCTACGGCGCCAAGGTCTACCGCAACATGACCCAGTGGCGCGACGGCGAGCAACTGGACGGA CGCCGCACCGACTCCAGCGGGATCGGCCACTACTTCAACGTCGGCTACGCGTTCTGA