ViewGene
Locus Name:
GeneID:
Location:

GeneID:702
TrivialName: PA14_61040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61040
PAO1 Ortholog Locus:PA4613
Sequence Length:1542
Protein Length:513
Start: 5444184
Stop: 5442643
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08001.1|AE004875_7 (AE004875) catalase [Pseudomonas aeruginosa PAO1]
Identities = 513/513 (100%), Positives = 513/513 (100%)
Sequence:
ATGAACCCTTCCCTGAACGCCTTCCGTCCCGGCCGCCTGCTGGTGGCGGCAAGCCTGACCGCCAGCCTCCTG
TCGCTGTCCGTACAGGCCGCGACCCTGACCCGTGACAACGGTGCGCCAGTGGGCGACAACCAGAACTCGCAG
ACCGCCGGGCCCAACGGTTCGGTGCTGCTGCAGGACGTGCAACTGCTGCAGAAGTTGCAACGTTTCGACCGC
GAGCGCATTCCCGAACGCGTGGTGCATGCCCGCGGCACCGGCGCCCATGGCGAGTTCGTCGCCAGCGCCGAT
ATCAGCGACCTGAGCATGGCCAAGGTCTTCCGCAAGGGCGAGAAGACCCCGGTATTCGTGCGCTTCTCCGCT
GTGGTGCACGGCAACCACTCCCCGGAAACCCTGCGCGATCCGCGCGGTTTCGCCACCAAGTTCTATACCGCA
GACGGCAATTGGGACCTGGTGGGCAACAACTTCCCGACCTTCTTCATCCGCGATGCGATCAAGTTCCCGGAC
ATGGTCCATGCCTTCAAGCCGGACCCGCGCAGCAACCTCGACGACGACTCGCGACGCTTCGATTTCTTCTCC
CACGTGCCGGAGGCGACCCGCACCCTGACCCTGCTGTATTCCAACGAGGGCACCCCGGCCAGCTACCGGGAA
ATGGACGGCAACAGCGTGCATGCCTACAAGCTGGTCAACGCCAGGGGCGAAGTGCACTACGTGAAGTTCCAC
TGGAAGAGCCTGCAGGGCCAGAAGAACCTCGATCCGAAGCAGGTGGCGGAAGTCCAGGGTCGCGACTACAGC
CACATGACCAATGACCTGGTGAGCGCGATCCGGAAGGGCGACTTCCCGAAATGGGACCTGTACATCCAGGTG
CTCAAGCCCGAGGACCTGGCGAAATTCGACTTCGATCCGCTGGACGCGACCAAGATCTGGCCGGGCATTCCC
GAGCGCAAGATCGGCCAGATGGTGCTGAACCGCAACGTCGACAACTTCTTCCAGGAAACCGAACAGGTCGCC
ATGGCGCCGTCGAACCTGGTGCCGGGCATCGAGCCCTCCGAGGATCGCCTGCTCCAGGGACGGCTGTTCGCC
TACGCCGACACCCAGATGTACCGGGTCGGCGCCAACGGCCTGGGCCTGCCGGTCAACCGCCCGCGCAGCGAG
GTCAATACCGTCAACCAGGACGGCGCGCTGAACGCCGGACACAGTACCAGCGGGGTGAACTACCAGCCGAGC
CGGCTCGATCCGCGCGAGGAGCAGGCCAGCGCCCGCTACGTGCGGACCCCGCTGAGCGGCACCACCCAGCAG
GCGAAGATCCAGCGCGAGCAGAACTTCAAGCAGACCGGCGAGCTGTTCCGCTCCTACGGCAAGAAGGACCAG
GCCGACCTGATCGCCAGTCTCGGCGGGGCGTTGGCGATCACCGACGACGAGAGCAAGTACATCATGCTTTCC
TACTTCTACAAGGCTGACAGCGACTACGGTACGGGCCTGGCCAAGGTGGCTGGAGCCGATCTGCAGCGCGTC
CGGCAACTGGCGGCGAAGCTCCAGGATTGA
Translation:
MNPSLNAFRPGRLLVAASLTASLLSLSVQAATLTRDNGAPVGDNQNSQTAGPNGSVLLQDVQLLQKLQRFDR
ERIPERVVHARGTGAHGEFVASADISDLSMAKVFRKGEKTPVFVRFSAVVHGNHSPETLRDPRGFATKFYTA
DGNWDLVGNNFPTFFIRDAIKFPDMVHAFKPDPRSNLDDDSRRFDFFSHVPEATRTLTLLYSNEGTPASYRE
MDGNSVHAYKLVNARGEVHYVKFHWKSLQGQKNLDPKQVAEVQGRDYSHMTNDLVSAIRKGDFPKWDLYIQV
LKPEDLAKFDFDPLDATKIWPGIPERKIGQMVLNRNVDNFFQETEQVAMAPSNLVPGIEPSEDRLLQGRLFA
YADTQMYRVGANGLGLPVNRPRSEVNTVNQDGALNAGHSTSGVNYQPSRLDPREEQASARYVRTPLSGTTQQ
AKIQREQNFKQTGELFRSYGKKDQADLIASLGGALAITDDESKYIMLSYFYKADSDYGTGLAKVAGADLQRV
RQLAAKLQD*
AnnotationID:711GeneID:702
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:17
Gene Name:katB
Confidence Code:1
GeneProduct:catalase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0753,cd00328,pfam00199,KOG0047
Secondary Functional Category(ies):
EC Number:1.11.1.6
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAC61659.1| (AF001355) catalase isozyme catalytic subunit CatF [Pseudomonas
           syringae pv. syringae]
          Length = 510

 Score =  803 bits (2075), Expect = 0.0
 Identities = 399/511 (78%), Positives = 434/511 (84%), Gaps = 2/511 (0%)


>gb|AAD38512.1|AF133262_4 (AF133262) catalase isozyme catalytic subunit precursor CatB
           [Pseudomonas syringae pv. syringae]
          Length = 352

 Score =  547 bits (1409), Expect = e-155
 Identities = 266/350 (76%), Positives = 299/350 (85%), Gaps = 1/350 (0%)








 
Structural Features:
COG0753, KatE, Catalase [Inorganic ion transport and metabolism]
CD-Length = 496 residues,  97.2% aligned
Score =  649 bits (1675), Expect = 0.0
Identities = 251/482 (52%), Positives = 312/482 (64%), Gaps = 8/482 (1%)

cd00328, catalase, Catalase.
CD-Length = 471 residues,  99.4% aligned
Score =  589 bits (1521), Expect = 4e-169
Identities = 236/468 (50%), Positives = 309/468 (66%), Gaps = 5/468 (1%)

pfam00199, Catalase, Catalase.
CD-Length = 385 residues,  99.5% aligned
Score =  530 bits (1368), Expect = 2e-151
Identities = 207/383 (54%), Positives = 265/383 (69%), Gaps = 4/383 (1%)

KOG0047, Catalase [Inorganic ion transport and metabolism]
CD-Length = 505 residues,  95.0% aligned
Score =  526 bits (1356), Expect = 5e-150
Identities = 214/480 (44%), Positives = 289/480 (60%), Gaps = 7/480 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1407




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18549




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31611




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:702_cdd.html


    		




 
URL:

















    ReferenceID:33326




  
Author/Investigator(s):
        Brown SM, Howell ML, Vasil ML, Anderson AJ, Hassett DJ.





  
Title:
        Cloning and characterization of the katB gene of Pseudomonas aeruginosa encoding a hydrogen peroxide-inducible catalase: purification of KatB, cellular localization, and demonstration that it is essential for optimal resistance to hydrogen peroxide.




  
PubMed:
        7592431


MedLine:
        




    
Source:
J Bacteriol. 1995 Nov;177(22):6536-44.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7592431









           
Homologs By Global Alignment 

           

       



     
Gene ID:702
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1186
                           PA4613_tr
                           translation of PA4613
                           513
                           99.99
                           99.99
                           0
                           2662.0
     

     
     
44957
                           gb|AAA79046.1|
                           (U34896) catalase [Pseudomonas aeruginosa]
                           513
                           99.99
                           99.99
                           0
                           2662.0
     

     
     
44955
                           gb|AAG08001.1|AE004875_7
                           (AE004875) catalase [Pseudomonas aeruginosa PAO1]
                           513
                           99.99
                           99.99
                           0
                           2662.0
     

     
     
44956
                           gb|AAB49463.1|
                           (U89384) paraquat inducible catalase isozyme B [Pseudomonas aeruginosa]
                           513
                           99.99
                           99.99
                           0
                           2662.0
     

     
     
44963
                           gb|AAC61659.1|
                           (AF001355) catalase isozyme catalytic subunit CatF [Pseudomonas syringae pv. syringae]
                           514
                           78.01
                           85.01
                           5
                           2077.0
     

     






      

          
GC ORFID: 43704How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4613Glimmer Score: 

          
Start: 4707864Stop: 4706323

          
Length: 1542


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4613 translation of PA4613Homolog Bit Score 1030.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8180 (ORF: BLASTX 820.0), psyr_15may02_Scaffold4_revised_gene5214 (ORF: BLASTX 414.0), t_PA4236 (ORF: BLASTX 374.0), t_PA4613 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCCTTCCCTGAACGCCTTCCGTCCCGGCCGCCTGCTGGTGGCGGCAAGCCTGACCGCCAGCCTCCTG 
TCGCTGTCCGTACAGGCCGCGACCCTGACCCGTGACAACGGTGCGCCAGTGGGCGACAACCAGAACTCGCAG 
ACCGCCGGGCCCAACGGTTCGGTGCTGCTGCAGGACGTGCAACTGCTGCAGAAGTTGCAACGTTTCGACCGC 
GAGCGCATTCCCGAACGCGTGGTGCATGCCCGCGGCACCGGCGCCCATGGCGAGTTCGTCGCCAGCGCCGAT 
ATCAGCGACCTGAGCATGGCCAAGGTCTTCCGCAAGGGCGAGAAGACCCCGGTATTCGTGCGCTTCTCCGCT 
GTGGTGCACGGCAACCACTCCCCGGAAACCCTGCGCGATCCGCGCGGTTTCGCCACCAAGTTCTATACCGCA 
GACGGCAATTGGGACCTGGTGGGCAACAACTTCCCGACCTTCTTCATCCGCGATGCGATCAAGTTCCCGGAC 
ATGGTCCATGCCTTCAAGCCGGACCCGCGCAGCAACCTCGACGACGACTCGCGACGCTTCGATTTCTTCTCC 
CACGTGCCGGAGGCGACCCGCACCCTGACCCTGCTGTATTCCAACGAGGGCACCCCGGCCAGCTACCGGGAA 
ATGGACGGCAACAGCGTGCATGCCTACAAGCTGGTCAACGCCAGGGGCGAAGTGCACTACGTGAAGTTCCAC 
TGGAAGAGCCTGCAGGGCCAGAAGAACCTCGATCCGAAGCAGGTGGCGGAAGTCCAGGGTCGCGACTACAGC 
CACATGACCAATGACCTGGTGAGCGCGATCCGGAAGGGCGACTTCCCGAAATGGGACCTGTACATCCAGGTG 
CTCAAGCCCGAGGACCTGGCGAAATTCGACTTCGATCCGCTGGACGCGACCAAGATCTGGCCGGGCATTCCC 
GAGCGCAAGATCGGCCAGATGGTGCTGAACCGCAACGTCGACAACTTCTTCCAGGAAACCGAACAGGTCGCC 
ATGGCGCCGTCGAACCTGGTGCCGGGCATCGAGCCCTCCGAGGATCGCCTGCTCCAGGGACGGCTGTTCGCC 
TACGCCGACACCCAGATGTACCGGGTCGGCGCCAACGGCCTGGGCCTGCCGGTCAACCGCCCGCGCAGCGAG 
GTCAATACCGTCAACCAGGACGGCGCGCTGAACGCCGGACACAGTACCAGCGGGGTGAACTACCAGCCGAGC 
CGGCTCGATCCGCGCGAGGAGCAGGCCAGCGCCCGCTACGTGCGGACCCCGCTGAGCGGCACCACCCAGCAG 
GCGAAGATCCAGCGCGAGCAGAACTTCAAGCAGACCGGCGAGCTGTTCCGCTCCTACGGCAAGAAGGACCAG 
GCCGACCTGATCGCCAGTCTCGGCGGGGCGTTGGCGATCACCGACGACGAGAGCAAGTACATCATGCTTTCC 
TACTTCTACAAGGCTGACAGCGACTACGGTACGGGCCTGGCCAAGGTGGCTGGAGCCGATCTGCAGCGCGTC 
CGGCAACTGGCGGCGAAGCTCCAGGATTGA