ViewGene
Locus Name:
GeneID:
Location:

GeneID:7016
TrivialName: PA14_01220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01220
PAO1 Ortholog Locus:
Sequence Length:921
Protein Length:306
Start: 119248
Stop: 120168
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03490.1|AE004448_9 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 92/302 (30%), Positives = 150/302 (49%), Gaps = 15/302 (4%)
Sequence:
GTGTCGTTCGAGAAAAATCATTTCAGCTATCTGCATGGCGTGGTGCAGAGCCGCACGACGATCCGCGCGGTG
GCCCAGATCGATCAGTTGACCGAACAGGGAGCGGCCAACGCCACCCTGATCAAGTGGAATCTCTCGTCGCCG
CCGCCAGCGGCGTTCAACCTGGCTTGGTACTGCACGCGCATGGCGATCCAGAAGGTTCCGCGTGGTGGCGGC
ATCGAGCTGATCTACATGGGGCCGGATGGGCACATGGGCTACGGCACCGCCAACGGCGATAGCGAGGCGCCG
ATCTGGCCGGCCGGTGAAGGGCCGGATGTGTACGGCGTCCTGCGCGACCTGCAGGGCATCGGCGATGGCGTC
TATGCGGTGGGCATGGGCCGTCAGGTCTACCGTCGCGACCCGTCGGGCGCGTGGCAGCGAAAGGATGCGGGG
ACGCTGCAGGACCGCGAGCTGATGGATGTCGTCGGCTTCAACGCTATCCATGGCCTCGACGAAGCGGACCTG
TATGCCGTGGGCTACGCCGGTGAGGTGTGGCGTTGCGGCAATGGACGCTGGGAGCATTTGGACAGCCCAACC
AATGTAATCCTCAATGCGGTGCACATGCTTCCCGACCGCCGCGTGGTGGTGGCGGGCAAGAACGGCTTTCTG
ATGATCGGCTCGGCGAGTGCCTGGAAGGTCGTCGAGACCGGGCTGGACGCGCAGATATGGGACGTCCAGTAC
TTCAACGACGACATCTACCTGGCTACCAGCAATGCGCTTTATCGGCTCGATGCACACCATGTCCCGCAGCAG
GTGGACATGCGCCTCTGCGGGCCGGTGACCTGTGGCCAACTGCATGCCGGCGACGGCATTCTCCTGTCCACC
GGTCGCAAGCACCAGTGTTGGAGCGACGACGGGAGCGTCTGGCATGACCTCACCTGA
Translation:
MSFEKNHFSYLHGVVQSRTTIRAVAQIDQLTEQGAANATLIKWNLSSPPPAAFNLAWYCTRMAIQKVPRGGG
IELIYMGPDGHMGYGTANGDSEAPIWPAGEGPDVYGVLRDLQGIGDGVYAVGMGRQVYRRDPSGAWQRKDAG
TLQDRELMDVVGFNAIHGLDEADLYAVGYAGEVWRCGNGRWEHLDSPTNVILNAVHMLPDRRVVVAGKNGFL
MIGSASAWKVVETGLDAQIWDVQYFNDDIYLATSNALYRLDAHHVPQQVDMRLCGPVTCGQLHAGDGILLST
GRKHQCWSDDGSVWHDLT*
AnnotationID:7016GeneID:7016
AnnotatorUID: danlee
Modification Date/Time: 2005-10-21 12:12:21
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15595298|ref|NP_248790.1|  hypothetical protein PA0100 [Pseudomonas aeruginosa PAO1]
gi|11348771|pir||A83634  hypothetical protein PA0100 [imported] - Pseudomonas aeruginosa (strain PAO1)
     Length=306
     Score =  134 bits (338),  Expect = 3e-30
     Identities = 92/302 (30%), Positives = 150/302 (49%), Gaps = 15/302 (4%)







 
Structural Features:






   
Genomic Context:






   
Comment:
about same length but only 30% identity with PA0100


















    ReferenceID:16740




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31106




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 50018How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5920587Stop: 5921507

          
Length: 921


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
GTGTCGTTCGAGAAAAATCATTTCAGCTATCTGCATGGCGTGGTGCAGAGCCGCACGACGATCCGCGCGGTG 
GCCCAGATCGATCAGTTGACCGAACAGGGAGCGGCCAACGCCACCCTGATCAAGTGGAATCTCTCGTCGCCG 
CCGCCAGCGGCGTTCAACCTGGCTTGGTACTGCACGCGCATGGCGATCCAGAAGGTTCCGCGTGGTGGCGGC 
ATCGAGCTGATCTACATGGGGCCGGATGGGCACATGGGCTACGGCACCGCCAACGGCGATAGCGAGGCGCCG 
ATCTGGCCGGCCGGTGAAGGGCCGGATGTGTACGGCGTCCTGCGCGACCTGCAGGGCATCGGCGATGGCGTC 
TATGCGGTGGGCATGGGCCGTCAGGTCTACCGTCGCGACCCGTCGGGCGCGTGGCAGCGAAAGGATGCGGGG 
ACGCTGCAGGACCGCGAGCTGATGGATGTCGTCGGCTTCAACGCTATCCATGGCCTCGACGAAGCGGACCTG 
TATGCCGTGGGCTACGCCGGTGAGGTGTGGCGTTGCGGCAATGGACGCTGGGAGCATTTGGACAGCCCAACC 
AATGTAATCCTCAATGCGGTGCACATGCTTCCCGACCGCCGCGTGGTGGTGGCGGGCAAGAACGGCTTTCTG 
ATGATCGGCTCGGCGAGTGCCTGGAAGGTCGTCGAGACCGGGCTGGACGCGCAGATATGGGACGTCCAGTAC 
TTCAACGACGACATCTACCTGGCTACCAGCAATGCGCTTTATCGGCTCGATGCACACCATGTCCCGCAGCAG 
GTGGACATGCGCCTCTGCGGGCCGGTGACCTGTGGCCAACTGCATGCCGGCGACGGCATTCTCCTGTCCACC 
GGTCGCAAGCACCAGTGTTGGAGCGACGACGGGAGCGTCTGGCATGACCTCACCTGA