ViewGene
Locus Name:
GeneID:
Location:

GeneID:7015
TrivialName: PA14_01140
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01140
PAO1 Ortholog Locus:
Sequence Length:1320
Protein Length:439
Start: 112514
Stop: 111195
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03483.1|AE004448_2 (AE004448) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 230/231 (99%), Positives = 231/231 (100%)
Sequence:
ATGGTCGCCGGAGCCGTGGCCGGAGCCCTGATCGGCGCCGCCGTGGTCGCCGCCACCGCCGCCACCGGCGGC
CTGGCCGCGGTGATCCTGGCCGGTTCGATCGCCGCCGGCGGGCTGTCGATGTTCCAGATCGTCAAGGGCCTG
ACCACCATCTTCGAGCTACCCGAGCCGACCACCGGGGTGCTCATACGCGGCAGCTTCAACGTCTACGTGAAC
AGTCGCAACGCGATGCGCGCCGGCGACGACGTCTCCGCCACCTGCAGCGGCCTGCCGCTGAACCATCCGCTG
TGGCCGTTCCCGGTGCTGATCGCCGAAGGCAGCGCCACCGTGTACATCAACGGCAAGCCGGCGGCGCGCCTG
CAGAGCAAGATGGTCTGCGGCGCGCACATCAAGACCGGCAGCCAGAACACCTTCATCGGCGGCCCCACCGAG
CGGGTGGCCTTCGTTCTCGATCTGGAGGAATGGCTGCACACCGGCCTCGagGCGCTGGGCCTGGCGGCCCTT
GCCGGCGGCCTGCTGCTGGCGGCGATGGCCGGGGTCGCGGCGCTGGTTGGAGTGGTCGCCATCGGCGGGCTG
ATGATGGGCGGCATGGCCCTGCTCGGCGACCTCGGCGACCGCCTCGGTCCCGGCTACCGCGACCTGTTCCAG
GGCGTGGCCGGCATGGCGCTGCTGGGCTTCGGACCGAAGATGGCACGGCTCGGCAACGCACCCAAGGGCGCG
CCGAAGACCCAGGTGCCGAAAGGCTTCGAGAAGGTCTATGGCAAGGCGCCGGCAGCCAAGGCCGAGATCGAC
GCGGTGGCCGACGGACTGGCGGCTAAGCACGGCGGCAGGGTCGCCAAGGCACCGATCAAGTCGCGCGAACGC
GCCATGCAGAAGATCAACAACGACTACAAGGGCGATCCGACCAAGATCAAGGACCTGGCCCGCAACACCATC
ATCGTCGAAGGCGACAAGGTGAACACCGTTGCCGCCGAGCTGGCCAACCGCGGCGCCAAGGTCAAGGTGATC
GACGGCAACGCCGACCCGCTCGGCTACAGCGGGGTGAACTCGACGATGAACACCAAGGCCGGGATACCCGGC
GAGATCCAGGTCAACTCGCCGGAGATGATCTACGCCAAGGAGTCGGAGGACATGGCTCGCATCCTCCTCGGC
AACGACACCTACGACGCGGTGGCGGCCAAGGCCGGCGTACCCGGAGGGCAGGGCCACAAGTACTATGAGGAC
TGGCGGGTACTGGATCCGAAGTCCCCGGAGGCCCAGGCCATCGCCGAGAAGAGCCGGGCGTACTACGACGCA
GTGAGGAAAGGCAATGGCAATTGA
Translation:
MVAGAVAGALIGAAVVAATAATGGLAAVILAGSIAAGGLSMFQIVKGLTTIFELPEPTTGVLIRGSFNVYVN
SRNAMRAGDDVSATCSGLPLNHPLWPFPVLIAEGSATVYINGKPAARLQSKMVCGAHIKTGSQNTFIGGPTE
RVAFVLDLEEWLHTGLEALGLAALAGGLLLAAMAGVAALVGVVAIGGLMMGGMALLGDLGDRLGPGYRDLFQ
GVAGMALLGFGPKMARLGNAPKGAPKTQVPKGFEKVYGKAPAAKAEIDAVADGLAAKHGGRVAKAPIKSRER
AMQKINNDYKGDPTKIKDLARNTIIVEGDKVNTVAAELANRGAKVKVIDGNADPLGYSGVNSTMNTKAGIPG
EIQVNSPEMIYAKESEDMARILLGNDTYDAVAAKAGVPGGQGHKYYEDWRVLDPKSPEAQAIAEKSRAYYDA
VRKGNGN*
AnnotationID:7015GeneID:7015
AnnotatorUID: danlee
Modification Date/Time: 2005-10-21 12:12:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|15595291|ref|NP_248783.1|  hypothetical protein PA0093 [Pseudomonas aeruginosa PAO1]
gi|11348765|pir||B83633  hypothetical protein PA0093 [imported] - Pseudomonas aeruginosa 
            (strain PAO1)
     Length=430
     Score =  449 bits (1155),  Expect = 9e-125
     Identities = 230/231 (99%), Positives = 231/231 (100%), Gaps = 0/231 (0%)

gi|70733492|ref|YP_263267.1|  Rhs family protein [Pseudomonas fluorescens Pf-5]
gi|68347791|gb|AAY95397.1|  Rhs family protein [Pseudomonas fluorescens Pf-5]
     Length=408
     Score =  369 bits (948),  Expect = 9e-101
     Identities = 187/248 (75%), Positives = 214/248 (86%), Gaps = 3/248 (1%)






 
Structural Features:
pfam05488, PAAR_motif, PAAR motif. 
             CD-Length = 30 residues,  93.3% aligned
             Score = 46.9 bits (112), Expect

COG4104, Uncharacterized conserved protein [Function unknown].
             CD-Length = 98 residues, only  77.6% aligned
             Score = 46.9 bits (111), Expect = 5e-06






   
Genomic Context:
First 231 amino acisds of PA14_01140 are 99% identical to the first half of PAO1 PA0093.






   
Comment:


















    ReferenceID:13709




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31104




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33438




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7015_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7015
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8066
                           PA0093_tr
                           translation of PA0093
                           514
                           51.94
                           56.03
                           159
                           1152.0
     

     
     
203103
                           gb|AAG03483.1|AE004448_2
                           (AE004448) hypothetical protein PA0093 [Pseudomonas aeruginosa PAO1]
                           514
                           51.94
                           56.03
                           159
                           1152.0
     

     
     
203104
                           emb|CAD16923.1|
                           (AL646075) PROBABLE TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           491
                           26.06
                           37.88
                           157
                           345.0
     

     






      

          
GC ORFID: 50017How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5913853Stop: 5912534

          
Length: 1320


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0093 translation of PA0093Homolog Bit Score 449.0

          
Other Homologs:  t_PA0093 translation of PA0093 (BLASTP 449)

          
GC ORF Sequence

           
ATGGTCGCCGGAGCCGTGGCCGGAGCCCTGATCGGCGCCGCCGTGGTCGCCGCCACCGCCGCCACCGGCGGC 
CTGGCCGCGGTGATCCTGGCCGGTTCGATCGCCGCCGGCGGGCTGTCGATGTTCCAGATCGTCAAGGGCCTG 
ACCACCATCTTCGAGCTACCCGAGCCGACCACCGGGGTGCTCATACGCGGCAGCTTCAACGTCTACGTGAAC 
AGTCGCAACGCGATGCGCGCCGGCGACGACGTCTCCGCCACCTGCAGCGGCCTGCCGCTGAACCATCCGCTG 
TGGCCGTTCCCGGTGCTGATCGCCGAAGGCAGCGCCACCGTGTACATCAACGGCAAGCCGGCGGCGCGCCTG 
CAGAGCAAGATGGTCTGCGGCGCGCACATCAAGACCGGCAGCCAGAACACCTTCATCGGCGGCCCCACCGAG 
CGGGTGGCCTTCGTTCTCGATCTGGAGGAATGGCTGCACACCGGCCTCGagGCGCTGGGCCTGGCGGCCCTT 
GCCGGCGGCCTGCTGCTGGCGGCGATGGCCGGGGTCGCGGCGCTGGTTGGAGTGGTCGCCATCGGCGGGCTG 
ATGATGGGCGGCATGGCCCTGCTCGGCGACCTCGGCGACCGCCTCGGTCCCGGCTACCGCGACCTGTTCCAG 
GGCGTGGCCGGCATGGCGCTGCTGGGCTTCGGACCGAAGATGGCACGGCTCGGCAACGCACCCAAGGGCGCG 
CCGAAGACCCAGGTGCCGAAAGGCTTCGAGAAGGTCTATGGCAAGGCGCCGGCAGCCAAGGCCGAGATCGAC 
GCGGTGGCCGACGGACTGGCGGCTAAGCACGGCGGCAGGGTCGCCAAGGCACCGATCAAGTCGCGCGAACGC 
GCCATGCAGAAGATCAACAACGACTACAAGGGCGATCCGACCAAGATCAAGGACCTGGCCCGCAACACCATC 
ATCGTCGAAGGCGACAAGGTGAACACCGTTGCCGCCGAGCTGGCCAACCGCGGCGCCAAGGTCAAGGTGATC 
GACGGCAACGCCGACCCGCTCGGCTACAGCGGGGTGAACTCGACGATGAACACCAAGGCCGGGATACCCGGC 
GAGATCCAGGTCAACTCGCCGGAGATGATCTACGCCAAGGAGTCGGAGGACATGGCTCGCATCCTCCTCGGC 
AACGACACCTACGACGCGGTGGCGGCCAAGGCCGGCGTACCCGGAGGGCAGGGCCACAAGTACTATGAGGAC 
TGGCGGGTACTGGATCCGAAGTCCCCGGAGGCCCAGGCCATCGCCGAGAAGAGCCGGGCGTACTACGACGCA 
GTGAGGAAAGGCAATGGCAATTGA