ViewGene

Locus Name:
GeneID:
Location:

GeneID: 701

TrivialName: PA14_43050

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_43050

PAO1 Ortholog Locus: PA1656

Sequence Length: 1557

Protein Length: 518

Start: 3831188

Stop: 3829632

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05045.1|AE004593_7 (AE004593) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 516/518 (99%), Positives = 516/518 (99%)

Sequence:

ATGACCTATTCGAGCAAGCTCTCCTCGCATTATCTGGAACTCGCGGAACAGCCGATTTCAAAGGATGTCTTT
GCGGGTGAGGATGTGCGTTTTTCCAGCGAATACGAGGCGCTGGAAAATGAGCTGGGCAAGGCGCTCTCGCTC
CATGAGAACGGCCAGACCGACTGGTTGAAAATCCTGGAAAACAGCGAAGCGCTGCTTAGTGCCCAATCCAAG
GACCTGCGTGTTGCAGCCTGGTTGACCTGGGCCCTCTACCAACGGGAATCCTTTCCCGGTTTGCTGGCCGGA
CTGGGATTGCTGGAACGTCTGTGCAGCCGGCATTGGGTCGAGATCCATCCGCTCAAGGCGCGCACTCGCGCC
GCGGCCATTGCCTGGCTGGTGCCCCGGCTGGAGCAGGCGCTGAACGAGAACGTACCGATCAAGGAGCAACTC
CCCCTGTTCCGGCGTCTCGCCGAGCACCTGGAAAAACTCGATACCGCGCTGACCGCGCAACTGGGCGACGAC
GCGCCCTTGTTGCTGCCGATCAGCCGACGCCTTTCGGGCATGCTCCAGCGCGCCGCCGACAACCAGCCCGAA
CCTGGCGTGGTCGGCGCCGTGGTGGCCCAGGTCAAGCAGGCGGCCAGCCAGTTGCTGGCGCCGGGTGCGCCC
ATCGACAACGAGCGCGACGCCCACAAGGCCATGCGCGCCCAGCAGGAGGCCGCACGCCCCCTGTGCGCCTGG
TGGCTGAAGCAGAAAGCCACCGATCTGCGCGCGCTGCGCCTCAACCGGACGATGCTCTGGCTGCCCATCGAG
TCCATGCCCGAGCGCAATGCCGAACAGGTCACCGCGCTAAGGGGAGTGCCGGCGGACAAGCTGAAAAGCTAC
CAGGAGCGTTTCGCCCAGGGCCTGTACGCCGATCTCCTGGTGGAGCTGGAGGCGAGCCTGGCACGGGCGCCG
TTCTGGTTCGACGGCCAGCGCCTGGTCTGGGAGTGCCTGCAAGGGCTCAACGCCGAGCAGGCGATGCGGGAA
GTCGAAATGCATTTCGCCTTGCTCCTGCAGCGTCTGCCGGGGCTGGTGGAGCTGCGTTTCCACGACGGCAGC
GCATTCGCCGATGCGGCCACCCGTGGCTGGATCAGCGTCCATGTCATGCCCCATCTCCAGAACGACAGTGCG
CCGCGCAAGGTCGAGACCGTGGCCCTGCAGGCCGAATGGGACGTCGCCCTGGACGAGGTCCAGCCGGTGTTG
CGCAAGGACGGCCTGAAGGCGGCGGTACAGGTGTTGAAGCAGGGCATGAAGCGCGCCCACGGCGGGCGCGCC
CGGTTCTTCTGGCAACTGAGCCTCGCGCGACTGTGCTTCCTGGCGAAGAAGTACGAGCTGGCCAAGACCCAG
CTGGAGAGCCTCGACCATCAGTTGCACGAATCGGGATTGCACGCCTGGGAGCCCGATCTGGCGCTGGATGTA
CTGCACCTGCTGCATAGCTGCTGCGAGCTGTTGCCGCAGAACCACGCCGTGCGAGAACGCAAGGAAGACATT
TATCGCAGGCTGTGCCACCTCGATCTCGAGGTGGTGCTCGAATAG

Translation:

MTYSSKLSSHYLELAEQPISKDVFAGEDVRFSSEYEALENELGKALSLHENGQTDWLKILENSEALLSAQSK
DLRVAAWLTWALYQRESFPGLLAGLGLLERLCSRHWVEIHPLKARTRAAAIAWLVPRLEQALNENVPIKEQL
PLFRRLAEHLEKLDTALTAQLGDDAPLLLPISRRLSGMLQRAADNQPEPGVVGAVVAQVKQAASQLLAPGAP
IDNERDAHKAMRAQQEAARPLCAWWLKQKATDLRALRLNRTMLWLPIESMPERNAEQVTALRGVPADKLKSY
QERFAQGLYADLLVELEASLARAPFWFDGQRLVWECLQGLNAEQAMREVEMHFALLLQRLPGLVELRFHDGS
AFADAATRGWISVHVMPHLQNDSAPRKVETVALQAEWDVALDEVQPVLRKDGLKAAVQVLKQGMKRAHGGRA
RFFWQLSLARLCFLAKKYELAKTQLESLDHQLHESGLHAWEPDLALDVLHLLHSCCELLPQNHAVRERKEDI
YRRLCHLDLEVVLE*

AnnotationID:710 GeneID:701

AnnotatorUID: diggins

Modification Date/Time: 2005-02-27 17:05:00

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA1656

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

Genomic Context:

Comment:

ReferenceID:1405

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:18547

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37203

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 701_cdd.html

URL:

Homologs By Global Alignment

Gene ID:701

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

1185 PA1656_tr translation of PA1656 518 99.61 99.61 0 2664.0

44953 gb|AAG05045.1|AE004593_7 (AE004593) hypothetical protein PA1656 [Pseudomonas aeruginosa PAO1] 518 99.61 99.61 0 2664.0

44954 gb|AAO58856.1| (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 518 77.41 87.64 0 2148.0

GC ORFID: `43703`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1656`	Glimmer Score:
Start: `1122721`	Stop: `1124277`
Length: `1557`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAG`	Truncated Stop:
Homolog: `t_PA1656 translation of PA1656`	Homolog Bit Score `1030.0`
Other Homologs: `t_PA1656 (ORF: GLIMMER)`
GC ORF Sequence
ATGACCTATTCGAGCAAGCTCTCCTCGCATTATCTGGAACTCGCGGAACAGCCGATTTCAAAGGATGTCTTT GCGGGTGAGGATGTGCGTTTTTCCAGCGAATACGAGGCGCTGGAAAATGAGCTGGGCAAGGCGCTCTCGCTC CATGAGAACGGCCAGACCGACTGGTTGAAAATCCTGGAAAACAGCGAAGCGCTGCTTAGTGCCCAATCCAAG GACCTGCGTGTTGCAGCCTGGTTGACCTGGGCCCTCTACCAACGGGAATCCTTTCCCGGTTTGCTGGCCGGA CTGGGATTGCTGGAACGTCTGTGCAGCCGGCATTGGGTCGAGATCCATCCGCTCAAGGCGCGCACTCGCGCC GCGGCCATTGCCTGGCTGGTGCCCCGGCTGGAGCAGGCGCTGAACGAGAACGTACCGATCAAGGAGCAACTC CCCCTGTTCCGGCGTCTCGCCGAGCACCTGGAAAAACTCGATACCGCGCTGACCGCGCAACTGGGCGACGAC GCGCCCTTGTTGCTGCCGATCAGCCGACGCCTTTCGGGCATGCTCCAGCGCGCCGCCGACAACCAGCCCGAA CCTGGCGTGGTCGGCGCCGTGGTGGCCCAGGTCAAGCAGGCGGCCAGCCAGTTGCTGGCGCCGGGTGCGCCC ATCGACAACGAGCGCGACGCCCACAAGGCCATGCGCGCCCAGCAGGAGGCCGCACGCCCCCTGTGCGCCTGG TGGCTGAAGCAGAAAGCCACCGATCTGCGCGCGCTGCGCCTCAACCGGACGATGCTCTGGCTGCCCATCGAG TCCATGCCCGAGCGCAATGCCGAACAGGTCACCGCGCTAAGGGGAGTGCCGGCGGACAAGCTGAAAAGCTAC CAGGAGCGTTTCGCCCAGGGCCTGTACGCCGATCTCCTGGTGGAGCTGGAGGCGAGCCTGGCACGGGCGCCG TTCTGGTTCGACGGCCAGCGCCTGGTCTGGGAGTGCCTGCAAGGGCTCAACGCCGAGCAGGCGATGCGGGAA GTCGAAATGCATTTCGCCTTGCTCCTGCAGCGTCTGCCGGGGCTGGTGGAGCTGCGTTTCCACGACGGCAGC GCATTCGCCGATGCGGCCACCCGTGGCTGGATCAGCGTCCATGTCATGCCCCATCTCCAGAACGACAGTGCG CCGCGCAAGGTCGAGACCGTGGCCCTGCAGGCCGAATGGGACGTCGCCCTGGACGAGGTCCAGCCGGTGTTG CGCAAGGACGGCCTGAAGGCGGCGGTACAGGTGTTGAAGCAGGGCATGAAGCGCGCCCACGGCGGGCGCGCC CGGTTCTTCTGGCAACTGAGCCTCGCGCGACTGTGCTTCCTGGCGAAGAAGTACGAGCTGGCCAAGACCCAG CTGGAGAGCCTCGACCATCAGTTGCACGAATCGGGATTGCACGCCTGGGAGCCCGATCTGGCGCTGGATGTA CTGCACCTGCTGCATAGCTGCTGCGAGCTGTTGCCGCAGAACCACGCCGTGCGAGAACGCAAGGAAGACATT TATCGCAGGCTGTGCCACCTCGATCTCGAGGTGGTGCTCGAATAG