ViewGene
Locus Name:
GeneID:
Location:

GeneID:7009
TrivialName: PA14_00970
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00970
PAO1 Ortholog Locus:
Sequence Length:543
Protein Length:180
Start: 96453
Stop: 95911
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03471.1|AE004447_4 (AE004447) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 172/180 (95%), Positives = 175/180 (97%)
Sequence:
GTGAaggtcgacCCGGCCGGCGCCGAAGCGCagatggaaGccatccgacgcacctatcgctgtctggtggaA
GGACTGgtgGACgtgctgcgcacGctggacaaCCTgaagggCGAGTTCCGCATGGCGCAGACCATGATCCag
cctgtgCAGAACAACCCGCTgaagTTCGCGCCGAACGTCGACGaAGCCATGCTGCTCCTGCTGCGCCGCGAC
AACCAGGCGTTCATGGCGCCGGATCGCGCGGTGGCCGACAGCTTCGAAGACCTCAAGGCGCACCAGTTGGCG
GTGATGGCCGGCGTGCAGGCCGCCATCCGCCACCTGCTGGCGCGCTTCGAACCGGCCGCGCTGGAAGCCCGC
TTCGGCAAGCCGGCCGGGCTTTCCGGCCTGCTGCCGGGGGCCCGCCAGGCACAGAACTGGGACAGTTTCACC
GAGCTGTACGCGAAGATCCTGCGCGAGGCGGAGGACGACTTCCAGGAGCTTTTCGGCCGCGAATTCAGCCGC
GCCTACGAGGAACACAGCGCTCGACTACGGCGTTCCTGA
Translation:
MKVDPAGAEAQMEAIRRTYRCLVEGLVDVLRTLDNLKGEFRMAQTMIQPVQNNPLKFAPNVDEAMLLLLRRD
NQAFMAPDRAVADSFEDLKAHQLAVMAGVQAAIRHLLARFEPAALEARFGKPAGLSGLLPGARQAQNWDSFT
ELYAKILREAEDDFQELFGREFSRAYEEHSARLRRS*
AnnotationID:7009GeneID:7009
AnnotatorUID: danlee
Modification Date/Time: 2006-03-13 12:12:02
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
Matches C-terminal portion of PA0081 (3-13-06).


















    ReferenceID:16736




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31092




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33421




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:7009_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7009
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8064
                           PA0081_tr
                           translation of PA0081
                           497
                           34.60
                           35.21
                           317
                           858.0
     

     
     
203101
                           gb|AAG03471.1|AE004447_4
                           (AE004447) hypothetical protein PA0081 [Pseudomonas aeruginosa PAO1]
                           497
                           34.60
                           35.21
                           317
                           858.0
     

     






      

          
GC ORFID: 50011How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5897792Stop: 5897250

          
Length: 543


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0081 translation of PA0081Homolog Bit Score 335.0

          
Other Homologs:  t_PA0081 translation of PA0081 (BLASTP 335)

          
GC ORF Sequence

           
GTGAaggtcgacCCGGCCGGCGCCGAAGCGCagatggaaGccatccgacgcacctatcgctgtctggtggaA 
GGACTGgtgGACgtgctgcgcacGctggacaaCCTgaagggCGAGTTCCGCATGGCGCAGACCATGATCCag 
cctgtgCAGAACAACCCGCTgaagTTCGCGCCGAACGTCGACGaAGCCATGCTGCTCCTGCTGCGCCGCGAC 
AACCAGGCGTTCATGGCGCCGGATCGCGCGGTGGCCGACAGCTTCGAAGACCTCAAGGCGCACCAGTTGGCG 
GTGATGGCCGGCGTGCAGGCCGCCATCCGCCACCTGCTGGCGCGCTTCGAACCGGCCGCGCTGGAAGCCCGC 
TTCGGCAAGCCGGCCGGGCTTTCCGGCCTGCTGCCGGGGGCCCGCCAGGCACAGAACTGGGACAGTTTCACC 
GAGCTGTACGCGAAGATCCTGCGCGAGGCGGAGGACGACTTCCAGGAGCTTTTCGGCCGCGAATTCAGCCGC 
GCCTACGAGGAACACAGCGCTCGACTACGGCGTTCCTGA