ViewGene
Locus Name:
GeneID:
Location:

GeneID:7001
TrivialName: PA14_00560
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00560
PAO1 Ortholog Locus:PA0044
Sequence Length:1329
Protein Length:442
Start: 57148
Stop: 58476
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03434.1|AE004444_3 (AE004444) exoenzyme T [Pseudomonas aeruginosa PAO1]
Identities = 440/442 (99%), Positives = 440/442 (99%)
Sequence:
ATGCATATTCAATCATCTCAGCAGAACCCGTCTTTCGTGGCTGAGTTGAGCCAGGCCGTGGCCGGGCGCCTG
GGACAGGTCGAGGCCCGCCAGGTGGCCACTCCCCGGGAGGCGCAACAACTGGCCCAGCGCCAGGAAGCACCG
AAGGGCGAGGGCCTGCTCTCCCGCCTGGGGGCTGCCCTCGCGCGTCCCTTCGTGGCGATCATCGAGTGGCTG
GGCAAACTGCTGGGGAGCCGTGCCCACACCGCCACCCAGGCGCCGCTCTCCCGTCAGGACGCGCCGCCTGCC
GCCAGTCTCTCGGCCGCCGAGATCAAGCAGATGATGCTGCAAAAGGCACTGCCCCTGACCTTGGGCGGACTT
GGCAAGGCGAGCGAGCTGGCGACTTTGACAGAGGAGAGACTGGCGAAGGATCACACGCGCCTGGCCAGCGGC
GACGGCGCCCTGCGCTCGCTGGCCACCGCCCTGGTCGGGATTCGCGATGGCAGCCGGATCGAGGCTTCCCGT
ACCCAGGCTGCCCGCCTGCTCGAACAGAGCGTTGGGGGGATCGCGCTGCAACAGTGGGGGACCGCGGGCGGT
GCCGCCAGCCAGCATGTACTCAGCGCAAGCCCGGAGCAACTGCGCGAAATCGCCGTCCAACTGCATGCGGTA
ATGGACAAGGTCGCCCTGTTGCGCCACGCGGTAGAGAGCGAGGTAAAGGGCGAGCCTGTCGACAAGGCGCTG
GCGGATGGCCTGGTGGAGCACTTCGGGCTGGAGGCGGAGCAGTACCTCGGCGAACACCCGGACGGGCCGTAC
AGCGATGCCGAGGTGATGGCGCTCGGTCTCTATACCAACGGCGAGTACCAGCACCTGAATCGTTCCCTGCGT
CAGGGACGGGAGCTGGATGCGGGCCAGGCGTTGATCGACCGGGGCATGTCTGCCGCGTTCGAAAAGAGCGGA
CCGGCTGAACAGGTCGTGAAGACCTTCCGCGGCACCCAGGGCAGGGATGCCTTCGAGGCGGTGAAAGAGGGC
CAGGTCGGCCACGACGCCGGCTATCTCTCCACCTCCCGGGACCCCGGCGTTGCCAGGAGCTTCGCGGGCCAG
GGCACGATAACCACCCTGTTCGGCAGATCCGGGATCGATGTCAGCGAGATATCGATCGAGGGCGATGAGCAG
GAGATCCTCTACGACAAGGGGACCGACATGCGCGTACTGCTCAGCGCCAAGGATGGGCAGGGTGTGACCCGT
CGGGTGCTCGAAGAGGCCACGCTGGGGGAACGGAGCGGCCACGGCGAGGGACTGCTCGATGCCCTGGACCTG
GCAACCGGGACGGATCGTTCAGGCAAGCCCTAA
Translation:
MHIQSSQQNPSFVAELSQAVAGRLGQVEARQVATPREAQQLAQRQEAPKGEGLLSRLGAALARPFVAIIEWL
GKLLGSRAHTATQAPLSRQDAPPAASLSAAEIKQMMLQKALPLTLGGLGKASELATLTEERLAKDHTRLASG
DGALRSLATALVGIRDGSRIEASRTQAARLLEQSVGGIALQQWGTAGGAASQHVLSASPEQLREIAVQLHAV
MDKVALLRHAVESEVKGEPVDKALADGLVEHFGLEAEQYLGEHPDGPYSDAEVMALGLYTNGEYQHLNRSLR
QGRELDAGQALIDRGMSAAFEKSGPAEQVVKTFRGTQGRDAFEAVKEGQVGHDAGYLSTSRDPGVARSFAGQ
GTITTLFGRSGIDVSEISIEGDEQEILYDKGTDMRVLLSAKDGQGVTRRVLEEATLGERSGHGEGLLDALDL
ATGTDRSGKP*
AnnotationID:6GeneID:7001
AnnotatorUID: danlee
Modification Date/Time: 2003-12-10 15:03:15
Gene Name:exoT
Confidence Code:1
GeneProduct:exoenzyme T
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:secreted factor/toxin
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Type III secretion
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:13682




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31077




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:7001
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8059
                           PA0044_tr
                           translation of PA0044
                           457
                           96.28
                           96.28
                           15
                           2186.0
     

     
     
203068
                           gb|AAG03434.1|AE004444_3
                           (AE004444) exoenzyme T [Pseudomonas aeruginosa PAO1]
                           457
                           96.28
                           96.28
                           15
                           2186.0
     

     
     
203069
                           gb|AAB07232.1|
                           (L46800) exoenzyme 53 [Pseudomonas aeruginosa]
                           457
                           95.62
                           96.06
                           15
                           2173.0
     

     
     
203084
                           gb|AAK38469.1|
                           (AY029248) exoenzyme S [Pseudomonas aeruginosa]
                           457
                           71.11
                           79.43
                           19
                           1553.0
     

     
     
203079
                           emb|CAA67834.1|
                           (X99471) exoenzyme S [Pseudomonas aeruginosa]
                           457
                           71.11
                           79.86
                           19
                           1559.0
     

     






      

          
GC ORFID: 50003How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5858485Stop: 5859813

          
Length: 1329


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0044 translation of PA0044Homolog Bit Score 846.0

          
Other Homologs:  t_PA0044 translation of PA0044 (BLASTP 846), t_PA3841 translation of PA3841 (BLASTP 604)

          
GC ORF Sequence

           
ATGCATATTCAATCATCTCAGCAGAACCCGTCTTTCGTGGCTGAGTTGAGCCAGGCCGTGGCCGGGCGCCTG 
GGACAGGTCGAGGCCCGCCAGGTGGCCACTCCCCGGGAGGCGCAACAACTGGCCCAGCGCCAGGAAGCACCG 
AAGGGCGAGGGCCTGCTCTCCCGCCTGGGGGCTGCCCTCGCGCGTCCCTTCGTGGCGATCATCGAGTGGCTG 
GGCAAACTGCTGGGGAGCCGTGCCCACACCGCCACCCAGGCGCCGCTCTCCCGTCAGGACGCGCCGCCTGCC 
GCCAGTCTCTCGGCCGCCGAGATCAAGCAGATGATGCTGCAAAAGGCACTGCCCCTGACCTTGGGCGGACTT 
GGCAAGGCGAGCGAGCTGGCGACTTTGACAGAGGAGAGACTGGCGAAGGATCACACGCGCCTGGCCAGCGGC 
GACGGCGCCCTGCGCTCGCTGGCCACCGCCCTGGTCGGGATTCGCGATGGCAGCCGGATCGAGGCTTCCCGT 
ACCCAGGCTGCCCGCCTGCTCGAACAGAGCGTTGGGGGGATCGCGCTGCAACAGTGGGGGACCGCGGGCGGT 
GCCGCCAGCCAGCATGTACTCAGCGCAAGCCCGGAGCAACTGCGCGAAATCGCCGTCCAACTGCATGCGGTA 
ATGGACAAGGTCGCCCTGTTGCGCCACGCGGTAGAGAGCGAGGTAAAGGGCGAGCCTGTCGACAAGGCGCTG 
GCGGATGGCCTGGTGGAGCACTTCGGGCTGGAGGCGGAGCAGTACCTCGGCGAACACCCGGACGGGCCGTAC 
AGCGATGCCGAGGTGATGGCGCTCGGTCTCTATACCAACGGCGAGTACCAGCACCTGAATCGTTCCCTGCGT 
CAGGGACGGGAGCTGGATGCGGGCCAGGCGTTGATCGACCGGGGCATGTCTGCCGCGTTCGAAAAGAGCGGA 
CCGGCTGAACAGGTCGTGAAGACCTTCCGCGGCACCCAGGGCAGGGATGCCTTCGAGGCGGTGAAAGAGGGC 
CAGGTCGGCCACGACGCCGGCTATCTCTCCACCTCCCGGGACCCCGGCGTTGCCAGGAGCTTCGCGGGCCAG 
GGCACGATAACCACCCTGTTCGGCAGATCCGGGATCGATGTCAGCGAGATATCGATCGAGGGCGATGAGCAG 
GAGATCCTCTACGACAAGGGGACCGACATGCGCGTACTGCTCAGCGCCAAGGATGGGCAGGGTGTGACCCGT 
CGGGTGCTCGAAGAGGCCACGCTGGGGGAACGGAGCGGCCACGGCGAGGGACTGCTCGATGCCCTGGACCTG 
GCAACCGGGACGGATCGTTCAGGCAAGCCCTAA