ViewGene
Locus Name:
GeneID:
Location:

GeneID:700
TrivialName: PA14_46010
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46010
PAO1 Ortholog Locus:PA1425
Sequence Length:1617
Protein Length:538
Start: 4093245
Stop: 4091629
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04814.1|AE004572_2 (AE004572) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 531/538 (98%), Positives = 533/538 (99%)
Sequence:
ATGACGAATACGTCGACCCTGACGCTTGATGGCGTCTCTTTCCAGCTGCCGGACGGCAGCCTTCTGTTTTCC
GATCTCGACGAAACCTTCGACACCCGGCACACCGGGCTGGTGGGACGCAACGGCGTCGGCAAGTCGCTGCTC
GCGCGCCTGCTCGCCGGACACTTGCAGCCGTCCAGCGGCAGCGTCCGGCGCCAGGGGCGCGTGCGCTACCTG
GCGCAGCAGCTCGATCCGGCCGACTATCCGACCGTCGCCGACCTGGCTGGCGTCCGCCCATGGCTGGAGGCG
CTGGCGCGGATCGAGGCGGGTAGCCTCGACGACGCCGACTACGAATGCCTGGGCGAGCGCTGGGACATCCGC
CAACGCCTGGCCGACGCCCTGGCCGCCGAGGGGCTCGGCCATCTCCGCGCGGATACCCCGAGCGAACGCCTG
AGCGGCGGCGAATGCATGCGCGTAGCGCTGCTCGGCGCATTCCTCGACGACGCCGACTTCCTCATCCTCGAC
GAACCGAGCAACCCTCTCGACGGGCCGGCGCGCGCCTTGTTGCGGGCGCGGCTGGCGGCCTGGGACGGCGGC
CTGCTGCTGGTCAGCCATGACCGCGAACTGCTCGAGGGCATGCAGCGGATCGTCGAGTTGTCGACCCTCGGC
CTGCGCAGCTATGGCGGCGGCTATTCCTTCTACGCACAGCTCCGGGAGGAGGCGCGCGAGGCCGCCGAGCGC
CGCCTGGACCGGCATCGTCTGGAGCGCAAGCGGCAGACCCTGGCCATGCGCGAACAGCAGCAGCGCCAGGAG
CGGCGCCAGGCCAGCGGCCGGCGCGAAGGCAAGACGGCGAACCAGGCGAAGATCCTGCTCGGTGGGTTCAGG
GAACGTAGCGAGGTCAGCGCCGGCAAGCTGCGCAATGCCCACCAGGCGGAGCGCGAGCGCCTCGACCGCGAG
GTGCGCGAGGCTGCCAGGGAGGTCGAGGAGGCGTCGCCGCTGCTGCTCGATTCGCCCGATGCCGAACTGGCG
GCACAGCGCCGGATCGTCGAGTTGAAGGGCGTGGTCCTGCCGCATCTGCGCGGGCCGTTGCGCGAAATCGAC
CTGCTCCTGAGCGGTCCGCGACGGCTGGCGCTGGTCGGCCCGAACGGCAGCGGCAAGTCGACCCTGCTGCGG
CTGCTGGCCGGGCAACGGGCGCCGCTGGCGGGAACCTGCGCGGTGACGGTGGGCGCCGCCTATCTCGACCAG
CGGCTGAGCGTGCTGGACCACGGGCGAGGCGTGCTGGAGCAGTTGCTGGAGGTCAATCGCAGTCGCGGCGAA
AGCTGGCTGCGCACGCGCCTGGCGCAACTCGGCTTGCCGGCTGAACGGCTCGCCCAGCCGTGCGCGACGCTG
AGCGGCGGCGAACGCCTGAAGGCGGCCCTGGCCCTGGTGCTCTACGCCGACCGGCCGGCGCAGTTGCTACTG
CTCGACGAACCGGACAACCACCTCGACCTGGCTGCGCGGCAGGCCCTGGAAAGCATGCTCGGGCAGTACCGT
GGGGCCTTGCTGGTGGTGTCCCACGACCCGGTGTTTCTCCGCCACCTGGCGCTGGACGGCGAACTGCGGGCT
ACTGCCGCGGGTTGGCGCCTGGAGGACCGATGA
Translation:
MTNTSTLTLDGVSFQLPDGSLLFSDLDETFDTRHTGLVGRNGVGKSLLARLLAGHLQPSSGSVRRQGRVRYL
AQQLDPADYPTVADLAGVRPWLEALARIEAGSLDDADYECLGERWDIRQRLADALAAEGLGHLRADTPSERL
SGGECMRVALLGAFLDDADFLILDEPSNPLDGPARALLRARLAAWDGGLLLVSHDRELLEGMQRIVELSTLG
LRSYGGGYSFYAQLREEAREAAERRLDRHRLERKRQTLAMREQQQRQERRQASGRREGKTANQAKILLGGFR
ERSEVSAGKLRNAHQAERERLDREVREAAREVEEASPLLLDSPDAELAAQRRIVELKGVVLPHLRGPLREID
LLLSGPRRLALVGPNGSGKSTLLRLLAGQRAPLAGTCAVTVGAAYLDQRLSVLDHGRGVLEQLLEVNRSRGE
SWLRTRLAQLGLPAERLAQPCATLSGGERLKAALALVLYADRPAQLLLLDEPDNHLDLAARQALESMLGQYR
GALLVVSHDPVFLRHLALDGELRATAAGWRLEDR*
AnnotationID:709GeneID:700
AnnotatorUID: diggins
Modification Date/Time: 2005-02-24 07:07:34
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA1425
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0488
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM36461.1| (AE011791) ABC transporter ATP-binding protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 537

 Score =  492 bits (1266), Expect = e-138
 Identities = 280/530 (52%), Positives = 337/530 (63%)








 
Structural Features:
COG0488, Uup, ATPase components of ABC transporters with duplicated 
ATPase domains.
CD-Length = 530 residues,  94.7% aligned
Score =  329 bits (844), Expect = 6e-91
Identities = 186/540 (34%), Positives = 256/540 (47%), Gaps = 61/540 (11%)








   
Genomic Context:






   
Comment:


















    ReferenceID:1403




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18545




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37424




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:700_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:700
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1184
                           PA1425_tr
                           translation of PA1425
                           538
                           98.69
                           99.07
                           0
                           2662.0
     

     
     
44949
                           gb|AAG04814.1|AE004572_2
                           (AE004572) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           538
                           98.69
                           99.07
                           0
                           2662.0
     

     
     
44951
                           gb|AAM40839.1|
                           (AE012255) ABC transporter ATP-binding protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           538
                           53.71
                           63.56
                           1
                           1259.0
     

     
     
44950
                           gb|AAM36461.1|
                           (AE011791) ABC transporter ATP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
                           538
                           52.04
                           62.63
                           1
                           1256.0
     

     
     
44952
                           gb|AAK24557.1|
                           (AE005927) ABC transporter, ATP-binding protein [Caulobacter crescentus CB15]
                           550
                           41.09
                           53.63
                           27
                           923.0
     

     






      

          
GC ORFID: 43702How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1425Glimmer Score: 

          
Start: 860664Stop: 862280

          
Length: 1617


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1425 translation of PA1425Homolog Bit Score 1030.0

          
Other Homologs:  t_PA1425 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGAATACGTCGACCCTGACGCTTGATGGCGTCTCTTTCCAGCTGCCGGACGGCAGCCTTCTGTTTTCC 
GATCTCGACGAAACCTTCGACACCCGGCACACCGGGCTGGTGGGACGCAACGGCGTCGGCAAGTCGCTGCTC 
GCGCGCCTGCTCGCCGGACACTTGCAGCCGTCCAGCGGCAGCGTCCGGCGCCAGGGGCGCGTGCGCTACCTG 
GCGCAGCAGCTCGATCCGGCCGACTATCCGACCGTCGCCGACCTGGCTGGCGTCCGCCCATGGCTGGAGGCG 
CTGGCGCGGATCGAGGCGGGTAGCCTCGACGACGCCGACTACGAATGCCTGGGCGAGCGCTGGGACATCCGC 
CAACGCCTGGCCGACGCCCTGGCCGCCGAGGGGCTCGGCCATCTCCGCGCGGATACCCCGAGCGAACGCCTG 
AGCGGCGGCGAATGCATGCGCGTAGCGCTGCTCGGCGCATTCCTCGACGACGCCGACTTCCTCATCCTCGAC 
GAACCGAGCAACCCTCTCGACGGGCCGGCGCGCGCCTTGTTGCGGGCGCGGCTGGCGGCCTGGGACGGCGGC 
CTGCTGCTGGTCAGCCATGACCGCGAACTGCTCGAGGGCATGCAGCGGATCGTCGAGTTGTCGACCCTCGGC 
CTGCGCAGCTATGGCGGCGGCTATTCCTTCTACGCACAGCTCCGGGAGGAGGCGCGCGAGGCCGCCGAGCGC 
CGCCTGGACCGGCATCGTCTGGAGCGCAAGCGGCAGACCCTGGCCATGCGCGAACAGCAGCAGCGCCAGGAG 
CGGCGCCAGGCCAGCGGCCGGCGCGAAGGCAAGACGGCGAACCAGGCGAAGATCCTGCTCGGTGGGTTCAGG 
GAACGTAGCGAGGTCAGCGCCGGCAAGCTGCGCAATGCCCACCAGGCGGAGCGCGAGCGCCTCGACCGCGAG 
GTGCGCGAGGCTGCCAGGGAGGTCGAGGAGGCGTCGCCGCTGCTGCTCGATTCGCCCGATGCCGAACTGGCG 
GCACAGCGCCGGATCGTCGAGTTGAAGGGCGTGGTCCTGCCGCATCTGCGCGGGCCGTTGCGCGAAATCGAC 
CTGCTCCTGAGCGGTCCGCGACGGCTGGCGCTGGTCGGCCCGAACGGCAGCGGCAAGTCGACCCTGCTGCGG 
CTGCTGGCCGGGCAACGGGCGCCGCTGGCGGGAACCTGCGCGGTGACGGTGGGCGCCGCCTATCTCGACCAG 
CGGCTGAGCGTGCTGGACCACGGGCGAGGCGTGCTGGAGCAGTTGCTGGAGGTCAATCGCAGTCGCGGCGAA 
AGCTGGCTGCGCACGCGCCTGGCGCAACTCGGCTTGCCGGCTGAACGGCTCGCCCAGCCGTGCGCGACGCTG 
AGCGGCGGCGAACGCCTGAAGGCGGCCCTGGCCCTGGTGCTCTACGCCGACCGGCCGGCGCAGTTGCTACTG 
CTCGACGAACCGGACAACCACCTCGACCTGGCTGCGCGGCAGGCCCTGGAAAGCATGCTCGGGCAGTACCGT 
GGGGCCTTGCTGGTGGTGTCCCACGACCCGGTGTTTCTCCGCCACCTGGCGCTGGACGGCGAACTGCGGGCT 
ACTGCCGCGGGTTGGCGCCTGGAGGACCGATGA