ViewGene
Locus Name:
GeneID:
Location:

GeneID:6996
TrivialName: PA14_00410
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_00410
PAO1 Ortholog Locus:
Sequence Length:378
Protein Length:125
Start: 35570
Stop: 35947
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAN65715.1|AE016198_2 (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
Identities = 73/105 (69%), Positives = 94/105 (89%)
Sequence:
ATGAACGAGTATTCCACCCCCCGCATCCAGGGCTTCCATGCTCACGTCTATTTCGATGCGCAGAGCATCGAG
CGAGCCCGCGCCCTTTGCGAAGAGGCGGCGCGGCGCTTTCCGCTGAAGATGGGGCGGATCCATGAGCGGCCG
GTAGGGCCGCATCCGGACTGGAGCTGCCAGCTGGCATTCGCTCCCGAGGTGTTCGGCGAGCTGGTGCCCTGG
CTGGCCATCCATCGGCAGGACCTGGTGGTGTTCATCCACCCGGTCACCGGCAACGATCTGCTCGACCATCGC
GACCGGGCCATCTGGATGGGAGCCATTCGCCCGCTGGACCTGTCGATCCTGGACGAAGGCCCGCAACGCTAT
GACTTCGCCGTGCCTTGA
Translation:
MNEYSTPRIQGFHAHVYFDAQSIERARALCEEAARRFPLKMGRIHERPVGPHPDWSCQLAFAPEVFGELVPW
LAIHRQDLVVFIHPVTGNDLLDHRDRAIWMGAIRPLDLSILDEGPQRYDFAVP*
AnnotationID:6997GeneID:6996
AnnotatorUID: danlee
Modification Date/Time: 2006-05-03 15:03:24
Gene Name:
Confidence Code:3
GeneProduct:putative dioxygenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3805
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84324781|ref|ZP_00972836.1|  COG3805: Aromatic ring-cleaving dioxygenase [Pseudomonas aeruginosa 
2192]
 gi|84318280|ref|ZP_00966706.1|  COG3805: Aromatic ring-cleaving dioxygenase [Pseudomonas aeruginosa 
C3719]
Length=125

 Score =  266 bits (681),  Expect = 1e-70
 Identities = 124/125 (99%), Positives = 125/125 (100%), Gaps = 0/125 (0%)

gi|94417310|ref|ZP_01297129.1|  hypothetical protein PaerP_01001110 [Pseudomonas aeruginosa PA7]
Length=125

 Score =  248 bits (633),  Expect = 5e-65
 Identities = 111/125 (88%), Positives = 120/125 (96%), Gaps = 0/125 (0%)








 
Structural Features:
COG3805, DodA, Aromatic ring-cleaving dioxygenase 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 120 residues,  85.0% aligned
Score =  107 bits (267), Expect = 6e-25
Identities = 46/104 (44%), Positives = 60/104 (57%), Gaps = 2/104 (1%)






   
Genomic Context:






   
Comment:
ORF present but not annotated in PAO1.


















    ReferenceID:13672




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31067




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33379




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6996_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6996
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203058
                           gb|AAN65715.1|AE016198_2
                           (AE016774) conserved hypothetical protein [Pseudomonas putida KT2440]
                           133
                           54.88
                           71.42
                           18
                           429.0
     

     
     
203059
                           gb|AAO53717.1|
                           (AE016856) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           125
                           51.20
                           68.80
                           15
                           378.0
     

     
     
203060
                           dbj|BAB77580.1|
                           (AP003581) ORF_ID:alr0056~similar to DOPA-dioxygenase [Nostoc sp. PCC 7120]
                           128
                           41.40
                           59.37
                           11
                           278.0
     

     






      

          
GC ORFID: 49998How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5836907Stop: 5837284

          
Length: 378


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAACGAGTATTCCACCCCCCGCATCCAGGGCTTCCATGCTCACGTCTATTTCGATGCGCAGAGCATCGAG 
CGAGCCCGCGCCCTTTGCGAAGAGGCGGCGCGGCGCTTTCCGCTGAAGATGGGGCGGATCCATGAGCGGCCG 
GTAGGGCCGCATCCGGACTGGAGCTGCCAGCTGGCATTCGCTCCCGAGGTGTTCGGCGAGCTGGTGCCCTGG 
CTGGCCATCCATCGGCAGGACCTGGTGGTGTTCATCCACCCGGTCACCGGCAACGATCTGCTCGACCATCGC 
GACCGGGCCATCTGGATGGGAGCCATTCGCCCGCTGGACCTGTCGATCCTGGACGAAGGCCCGCAACGCTAT 
GACTTCGCCGTGCCTTGA