ViewGene

Locus Name:
GeneID:
Location:

GeneID:699
TrivialName: PA14_62230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_62230
PAO1 Ortholog Locus:PA4701
Sequence Length:1563
Protein Length:520
Start: 5552437
Stop: 5553999
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08087.1|AE004884_5 (AE004884) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 519/520 (99%), Positives = 520/520 (100%)
Sequence:
GTGAGCCAGACCCTGATCGCCGCCCTGCAGAACCCGGCCCTCTACCCCCACCCGGTGGAGCGCTTCGAGGTC
ATCGAGACGCATATCTCCTGGGTCCTGTTGACCGGTCCCTACGCCTACAAGATCAAGAAGCCGATGGATTTC
GGCTTTCTCGATTTCACCAGCCTGGACAAGCGCCGTTTCTATTGCAACGAAGAGCTGCGCCTGAACCAGCGC
CTCACCGACGATCTCTACCTGGAGGTCCTGCCGATCACCGGCAGCGAAGAAGCGCCGCGGATCGGCGGCGAC
GGCGAGGCAATCGAATACCTGCTGAAGATGCGCCAGTTCCCGCAGGACAACCTGCTGGCGGCAATCCAGGGC
CGCGGCGAACTGTCCAACCAGCATATCGACGAACTGGCCGAGCAGATCGCGCACTTCCACCAGAACACTCCG
AAGGTGCCGCTGGAGCACCCGCTGGGCACCGCCGAGTCCTGCATGGCGCCGGTGCGGCAGAATTTCGAGCAG
GTTCGCCCGCTGCTCAAGGACAAGGCCGACCTGCAACAGCTGGATGCCCTCGAAGCCTGGGCGGAAAGCAGC
TTCGAACGCCTGCTGCCGGTGCTCCAGGAGCGCAAGGCGAAGGGCTTCATCCGCGAATGCCACGGCGACATC
CACCTGGGCAACGCCGCGCTGATCGACGGCAGGGTAGTGCTGTTCGACTGCATCGAATTCAACGAGCCGTTC
CGTTTCACCGATGTCTGCGCCGACTTCGCCTTCCTCGCGATGGACCTGGAAGATCGCGGCCTGAAGTGCCAC
GCTCGACGCTTCGTCAGCCTCTATCTGGAACACACCGGCGACTACCAGGCCCTGGAACTGCTGAACTTCTAC
AAGGCCTACCGCGCCATGGTCCGCGCCAAGGTCGCGCTGTTCAGCCTCGGCTACCAGACCGATGCCGTGCAG
CGCGCGGCGACCCTGCGCCAGTACCGCAACTACGCCAACCTGGCGGAAAGCTACAGCGCCATTCCCTCGCGC
TTCCTGGCGGTCACCCATGGTGTCTCCGCGGTCGGCAAGAGCCAGGTGGCCATGCGTCTGGTGGAGGCTCTG
GGCGCCGTGCGCCTGCGCTCGGATATCGAACGCAAGCGTCTGTTCGGCGAGCAGCCGGAACACGACAGGGGC
CAGTTCGCCGCCGGCATCTATAGCAGCCAGGCCAGCGAAGCGACCTATGCGCACCTTCACCAGTTGGCCGCG
AAGATCCTCCAGGCTGGCTATCCGGTGGTGATCGATGCCGCCTACCTGAAGCAGAGTCAGCGCCAGGCCGCT
TGCCACATCGCGGAAGAAACCGGCGTGCCGTTCCTGATCCTCGACTGCCAGGCGCCCGAAGCGGTGATCGCC
GGCTGGCTTGCGCAACGCCAGGCGGAAGGCAAGGACCCGTCCGACGCGACTCTCGACGTGATCCGCACCCAG
CAGGCTACCCGCGAGCCGCTGACAGCGGCGGAGACGGTCCAGAGCAAGCGTGTAGACACCCACGACGCGGCC
AGCCTCGACGGGCTGGTCGACGGCATTCGCCAGCGCCTGCCCGGTCTCTGA
Translation:
MSQTLIAALQNPALYPHPVERFEVIETHISWVLLTGPYAYKIKKPMDFGFLDFTSLDKRRFYCNEELRLNQR
LTDDLYLEVLPITGSEEAPRIGGDGEAIEYLLKMRQFPQDNLLAAIQGRGELSNQHIDELAEQIAHFHQNTP
KVPLEHPLGTAESCMAPVRQNFEQVRPLLKDKADLQQLDALEAWAESSFERLLPVLQERKAKGFIRECHGDI
HLGNAALIDGRVVLFDCIEFNEPFRFTDVCADFAFLAMDLEDRGLKCHARRFVSLYLEHTGDYQALELLNFY
KAYRAMVRAKVALFSLGYQTDAVQRAATLRQYRNYANLAESYSAIPSRFLAVTHGVSAVGKSQVAMRLVEAL
GAVRLRSDIERKRLFGEQPEHDRGQFAAGIYSSQASEATYAHLHQLAAKILQAGYPVVIDAAYLKQSQRQAA
CHIAEETGVPFLILDCQAPEAVIAGWLAQRQAEGKDPSDATLDVIRTQQATREPLTAAETVQSKRVDTHDAA
SLDGLVDGIRQRLPGL*
AnnotationID:708GeneID:699
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 21:09:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4701
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:14201
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18543
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37632
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:699_cdd.html
URL:
Homologs By Global Alignment
Gene ID:699

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1183 PA4701_tr translation of PA4701 520 99.80 99.99 0 2670.0
44945 gb|AAG08087.1|AE004884_5 (AE004884) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 520 99.61 99.99 0 2667.0
44947 gb|AAO54510.1| (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000] 520 71.92 82.11 8 1910.0
44946 gb|AAN70257.1|AE016666_1 (AE016791) conserved hypothetical protein [Pseudomonas putida KT2440] 520 71.73 81.53 18 1949.0
44948 emb|CAD73967.1| (BX294140) conserved hypothetical protein [Pirellula sp.] [Pirellula sp. 1] 554 38.62 55.23 75 919.0
GC ORFID: 43701How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4701Glimmer Score:
Start: 4816117Stop: 4817679
Length: 1563
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4701 translation of PA4701Homolog Bit Score 1033.0
Other Homologs: psyr_15may02_Scaffold19_revised_gene2869 (ORF: BLASTX 752.0), psyr_15may02_Scaffold4_revised_gene5373 (ORF: BLASTX 741.0), t_PA4701 (ORF: GLIMMER)
GC ORF Sequence
GTGAGCCAGACCCTGATCGCCGCCCTGCAGAACCCGGCCCTCTACCCCCACCCGGTGGAGCGCTTCGAGGTC
ATCGAGACGCATATCTCCTGGGTCCTGTTGACCGGTCCCTACGCCTACAAGATCAAGAAGCCGATGGATTTC
GGCTTTCTCGATTTCACCAGCCTGGACAAGCGCCGTTTCTATTGCAACGAAGAGCTGCGCCTGAACCAGCGC
CTCACCGACGATCTCTACCTGGAGGTCCTGCCGATCACCGGCAGCGAAGAAGCGCCGCGGATCGGCGGCGAC
GGCGAGGCAATCGAATACCTGCTGAAGATGCGCCAGTTCCCGCAGGACAACCTGCTGGCGGCAATCCAGGGC
CGCGGCGAACTGTCCAACCAGCATATCGACGAACTGGCCGAGCAGATCGCGCACTTCCACCAGAACACTCCG
AAGGTGCCGCTGGAGCACCCGCTGGGCACCGCCGAGTCCTGCATGGCGCCGGTGCGGCAGAATTTCGAGCAG
GTTCGCCCGCTGCTCAAGGACAAGGCCGACCTGCAACAGCTGGATGCCCTCGAAGCCTGGGCGGAAAGCAGC
TTCGAACGCCTGCTGCCGGTGCTCCAGGAGCGCAAGGCGAAGGGCTTCATCCGCGAATGCCACGGCGACATC
CACCTGGGCAACGCCGCGCTGATCGACGGCAGGGTAGTGCTGTTCGACTGCATCGAATTCAACGAGCCGTTC
CGTTTCACCGATGTCTGCGCCGACTTCGCCTTCCTCGCGATGGACCTGGAAGATCGCGGCCTGAAGTGCCAC
GCTCGACGCTTCGTCAGCCTCTATCTGGAACACACCGGCGACTACCAGGCCCTGGAACTGCTGAACTTCTAC
AAGGCCTACCGCGCCATGGTCCGCGCCAAGGTCGCGCTGTTCAGCCTCGGCTACCAGACCGATGCCGTGCAG
CGCGCGGCGACCCTGCGCCAGTACCGCAACTACGCCAACCTGGCGGAAAGCTACAGCGCCATTCCCTCGCGC
TTCCTGGCGGTCACCCATGGTGTCTCCGCGGTCGGCAAGAGCCAGGTGGCCATGCGTCTGGTGGAGGCTCTG
GGCGCCGTGCGCCTGCGCTCGGATATCGAACGCAAGCGTCTGTTCGGCGAGCAGCCGGAACACGACAGGGGC
CAGTTCGCCGCCGGCATCTATAGCAGCCAGGCCAGCGAAGCGACCTATGCGCACCTTCACCAGTTGGCCGCG
AAGATCCTCCAGGCTGGCTATCCGGTGGTGATCGATGCCGCCTACCTGAAGCAGAGTCAGCGCCAGGCCGCT
TGCCACATCGCGGAAGAAACCGGCGTGCCGTTCCTGATCCTCGACTGCCAGGCGCCCGAAGCGGTGATCGCC
GGCTGGCTTGCGCAACGCCAGGCGGAAGGCAAGGACCCGTCCGACGCGACTCTCGACGTGATCCGCACCCAG
CAGGCTACCCGCGAGCCGCTGACAGCGGCGGAGACGGTCCAGAGCAAGCGTGTAGACACCCACGACGCGGCC
AGCCTCGACGGGCTGGTCGACGGCATTCGCCAGCGCCTGCCCGGTCTCTGA