ViewGene

Locus Name:
GeneID:
Location:

GeneID: 6988

TrivialName: PA14_00040

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_00040

PAO1 Ortholog Locus:

Sequence Length: 2580

Protein Length: 859

Start: 6827

Stop: 4248

Strand: -

Type:

ChromosomeID: 2

Status: INACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAB09604.1| (M38373) ORF4 [Haloferax alicantei] [Haloferax lucentensis] Identities = 225/558 (40%), Positives = 312/558 (55%), Gaps = 8/558 (1%)

Sequence:

ATGCCGGCGAGCAACCGGGGCTCGACCACACCTTGGCAAGGCACCCCTGGCGCCCGTATCCAGGCTACCTGG
CGCAAAAAGAAAACCCCGGCGCCAGGCCGGGGTTTCCATGAGGGTCGGTCTGCCGACCTGTCACACGTCCAG
GTTCGACACCGCCAGCGCGTTGCTTTCGATGAAGTCGCGGCGCGGCTCCACGGCATCGCCCATCAGGGTGTT
GAAGATCTGGTCGGCGGCGATGGCGTCCTCGATGGTCACCTTGAGCATGCGCCGGACGTTCGGATCCATGGT
GGTTTCCCACAGCTGCTCAGGGTTCATCTCGCCCAACCCCTTGTATCGCTGGATGCTGTGGCGCTTGGTACC
TTCGGCCATCAGCCAGTCCAGGCCGTCCTTGAAGGCGCTGATCGGGCGCTTGCGCTCACCCTTCTGCACGTA
GGCGCCGTCTTCCAGCAGGCTGTTCAGCTGGTCGCCGAGCAGCGACACCGAGCGGTAGTCATTGCTGGCGAA
GAAGTCACGGTTGAAGGTGACGTAGCTGGACAGGCCGTGGGCCACCAGTTCCACCTCGGGCAGCCACAGGTG
GCGCTCGCGGTCTTCGCGCAGGCTGGCCTTGTAGGTCAGGCCAGACTTCTCGGCGGCGGTCAGGCGCGCCTG
GAACTTCTCCAACCAGCCCTGCATGGCCGACTCGTTAGCCAGGTCGTCCACCGACACGGTAGGCAGGTAGAT
GAAGTGCTCGGTCAGCTCCTGGGGGTACAGGCGCGACAGGCGCTTGAGGGTGGCGATCACCCCGCGATACTC
GTTGACCAGTTTCTCCAGCGCTGCCCCGGACAGGCCCGGAGCGTGCTCGTTGACGTGCAGGCTGGCGTCTTC
CAGGGCCGACTGGGTCATGTACTCTTCCATGGCCTGGTCGTCCTTGATGTACTGCTCCTGCTTGCCACGCTT
GACCTTGTACAACGGGGGCTGGGCGATGTAGATGTAGCCACGCTCGATCAGCTCGGGCATCTGGCGGAAGAA
GAAGGTCAACAGCAGGGTGCGGATGTGCGAACCGTCGACGTCAGCATCGGTCATGATGATGATGTTGTGGTA
GCGCAGCTTGTCGATGTTGTACTCCTCGCGGCCGATGCCACAGCCCAGGGCGGTGATCAGCGTACCGACCTC
CTGGGAGGAGAGCATCTTGTCGAAGCGTGCCTTCTCGACGTTGAGGATCTTGCCCTTGAGCGGCAGGATCGC
CTGGGTCCGGCGATTGCGGCCCTGCTTGGCGGAACCGCCCGCGGAGTCACCCTCCACGATGTACAGTTCGGA
GAGCGCCGGGTCCTTTTCCTGGCAATCGGCCAGTTTGCCGGGCAGGCCGGCGATGTCCAGCGCGCCCTTGCG
GCGGGTCATCTCGCGCGCCTTGCGCGCGGCTTCACGGGCACGGGCGGCGTCGATCATCTTGCCGACCACGGC
CTTGGCTTCGTTGGGATTCTCCAGCAGGAAGTCGGCGAAGTACTTGCCCATCTCCTGTTCCACCGCGGTCTT
CACCTCGGAGGAGACCAGCTTGTCCTTGGTCTGCGAGCTGAACTTCGGGTCCGGTACCTTCACCGAGATGAT
CGCGGTGAGGCCTTCGCGGGCATCGTCGCCGGTGGTGGCGATCTTGAATTTCTTCGCCAGGCCTTCGGCCTC
GATGTAGTTGTTCAGGTTACGCGTCAGCGCCGAACGGAAACCGGCCAGGTGGGTGCCGCCATCACGCTGCGG
GATGTTGTTGGTGAAGCAGAGCAGGTTCTCGTTGAAGCTGTCGTTCCACTGCAAGGCGACTTCCACACCCAC
GCCGTCCTCTTCACGCTGGACGTTGAAGTGGAATACCTCGTTCACCGCGGTCTTGTTGGTGTTCAAGTACTC
GACGAAGGCCTTCAGACCGCCTTCGTACTTGAACAGCTCCTCCTTGCCGGTACGCTCGTCGCGCAGCAGGAT
GCCGACGCCGGAGTTGAGGAAGGACAGTTCGCGGATGCGCTTGGCCAGGATGTCCCAACTGAAGTGGATGTT
GCTGAAGGTCTCCGGGGACGGCTTGAAGTGAACTTCGGTACCGGAGCCATCGGTCTCGCCCACTTCGCGCAG
TGGGAACTGCGGAACGCCGTGGTGGTAGACCTGTTCCCAGACCTTGTTGTGGCGACGGATGGTCAGGCGCAG
CTCATGGGACAGCGCGTTCACCACCGAGACGCCCACACCGTGCAAGCCGCCGGACACTTTGTAGGTGTTGTC
GTCGAACTTGCCGCCGGCGTGGAGGACGGTCATGATCACTTCCGCCGCAGAAACCCCTTCTTCCTTGTGGAT
ATCCACCGGAATACCGCGTCCATTGTCGCGGACAGTGATCGACTCATCCGTATGGATGGTGATGCTGATTTC
GCTGCAGTAACCGGCCAGCGCTTCGTCGATGGAGTTATCCACCACCTCGAACACCATGTGGTGCAGACCGGT
GCCATCGTCGGTGTCGCCGATGTACATGCCGGGGCGCTTGCGTACGGCATCCAGCCCCTTCAGCACCTTGAT
GCTGGAAGAGTCGTACGTGTTGTTCTCGCTCATGCTTCACTCCCGATGGTCGTGGTCTGA

Translation:

MPASNRGSTTPWQGTPGARIQATWRKKKTPAPGRGFHEGRSADLSHVQVRHRQRVAFDEVAARLHGIAHQGV
EDLVGGDGVLDGHLEHAPDVRIHGGFPQLLRVHLAQPLVSLDAVALGTFGHQPVQAVLEGADRALALTLLHV
GAVFQQAVQLVAEQRHRAVVIAGEEVTVEGDVAGQAVGHQFHLGQPQVALAVFAQAGLVGQARLLGGGQARL
ELLQPALHGRLVSQVVHRHGRQVDEVLGQLLGVQARQALEGGDHPAILVDQFLQRCPGQARSVLVDVQAGVF
QGRLGHVLFHGLVVLDVLLLLATLDLVQRGLGDVDVATLDQLGHLAEEEGQQQGADVRTVDVSIGHDDDVVV
AQLVDVVLLAADATAQGGDQRTDLLGGEHLVEACLLDVEDLALERQDRLGPAIAALLGGTARGVTLHDVQFG
ERRVLFLAIGQFAGQAGDVQRALAAGHLARLARGFTGTGGVDHLADHGLGFVGILQQEVGEVLAHLLFHRGL
HLGGDQLVLGLRAELRVRYLHRDDRGEAFAGIVAGGGDLEFLRQAFGLDVVVQVTRQRRTETGQVGAAITLR
DVVGEAEQVLVEAVVPLQGDFHTHAVLFTLDVEVEYLVHRGLVGVQVLDEGLQTAFVLEQLLLAGTLVAQQD
ADAGVEEGQFADALGQDVPTEVDVAEGLRGRLEVNFGTGAIGLAHFAQWELRNAVVVDLFPDLVVATDGQAQ
LMGQRVHHRDAHTVQAAGHFVGVVVELAAGVEDGHDHFRRRNPFFLVDIHRNTASIVADSDRLIRMDGDADF
AAVTGQRFVDGVIHHLEHHVVQTGAIVGVADVHAGALAYGIQPLQHLDAGRVVRVVLAHASLPMVVV*

AnnotationID:6989 GeneID:6988

AnnotatorUID: diggins

Modification Date/Time: 2005-03-22 09:09:38

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms:

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs:

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

Structural Features:

CDD Search: No hits at any threshold.

Genomic Context:

Comment:

ReferenceID:13659

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:31051

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

Homologs By Global Alignment

Gene ID:6988

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

203057 gb|AAB09604.1| (M38373) ORF4 [Haloferax alicantei] [Haloferax lucentensis] 936 29.70 40.38 269 910.0

GC ORFID: `49990`	How Found: `Glimmer`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name:	Glimmer Score:
Start: `5808164`	Stop: `5805585`
Length: `2580`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog:	Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCCGGCGAGCAACCGGGGCTCGACCACACCTTGGCAAGGCACCCCTGGCGCCCGTATCCAGGCTACCTGG CGCAAAAAGAAAACCCCGGCGCCAGGCCGGGGTTTCCATGAGGGTCGGTCTGCCGACCTGTCACACGTCCAG GTTCGACACCGCCAGCGCGTTGCTTTCGATGAAGTCGCGGCGCGGCTCCACGGCATCGCCCATCAGGGTGTT GAAGATCTGGTCGGCGGCGATGGCGTCCTCGATGGTCACCTTGAGCATGCGCCGGACGTTCGGATCCATGGT GGTTTCCCACAGCTGCTCAGGGTTCATCTCGCCCAACCCCTTGTATCGCTGGATGCTGTGGCGCTTGGTACC TTCGGCCATCAGCCAGTCCAGGCCGTCCTTGAAGGCGCTGATCGGGCGCTTGCGCTCACCCTTCTGCACGTA GGCGCCGTCTTCCAGCAGGCTGTTCAGCTGGTCGCCGAGCAGCGACACCGAGCGGTAGTCATTGCTGGCGAA GAAGTCACGGTTGAAGGTGACGTAGCTGGACAGGCCGTGGGCCACCAGTTCCACCTCGGGCAGCCACAGGTG GCGCTCGCGGTCTTCGCGCAGGCTGGCCTTGTAGGTCAGGCCAGACTTCTCGGCGGCGGTCAGGCGCGCCTG GAACTTCTCCAACCAGCCCTGCATGGCCGACTCGTTAGCCAGGTCGTCCACCGACACGGTAGGCAGGTAGAT GAAGTGCTCGGTCAGCTCCTGGGGGTACAGGCGCGACAGGCGCTTGAGGGTGGCGATCACCCCGCGATACTC GTTGACCAGTTTCTCCAGCGCTGCCCCGGACAGGCCCGGAGCGTGCTCGTTGACGTGCAGGCTGGCGTCTTC CAGGGCCGACTGGGTCATGTACTCTTCCATGGCCTGGTCGTCCTTGATGTACTGCTCCTGCTTGCCACGCTT GACCTTGTACAACGGGGGCTGGGCGATGTAGATGTAGCCACGCTCGATCAGCTCGGGCATCTGGCGGAAGAA GAAGGTCAACAGCAGGGTGCGGATGTGCGAACCGTCGACGTCAGCATCGGTCATGATGATGATGTTGTGGTA GCGCAGCTTGTCGATGTTGTACTCCTCGCGGCCGATGCCACAGCCCAGGGCGGTGATCAGCGTACCGACCTC CTGGGAGGAGAGCATCTTGTCGAAGCGTGCCTTCTCGACGTTGAGGATCTTGCCCTTGAGCGGCAGGATCGC CTGGGTCCGGCGATTGCGGCCCTGCTTGGCGGAACCGCCCGCGGAGTCACCCTCCACGATGTACAGTTCGGA GAGCGCCGGGTCCTTTTCCTGGCAATCGGCCAGTTTGCCGGGCAGGCCGGCGATGTCCAGCGCGCCCTTGCG GCGGGTCATCTCGCGCGCCTTGCGCGCGGCTTCACGGGCACGGGCGGCGTCGATCATCTTGCCGACCACGGC CTTGGCTTCGTTGGGATTCTCCAGCAGGAAGTCGGCGAAGTACTTGCCCATCTCCTGTTCCACCGCGGTCTT CACCTCGGAGGAGACCAGCTTGTCCTTGGTCTGCGAGCTGAACTTCGGGTCCGGTACCTTCACCGAGATGAT CGCGGTGAGGCCTTCGCGGGCATCGTCGCCGGTGGTGGCGATCTTGAATTTCTTCGCCAGGCCTTCGGCCTC GATGTAGTTGTTCAGGTTACGCGTCAGCGCCGAACGGAAACCGGCCAGGTGGGTGCCGCCATCACGCTGCGG GATGTTGTTGGTGAAGCAGAGCAGGTTCTCGTTGAAGCTGTCGTTCCACTGCAAGGCGACTTCCACACCCAC GCCGTCCTCTTCACGCTGGACGTTGAAGTGGAATACCTCGTTCACCGCGGTCTTGTTGGTGTTCAAGTACTC GACGAAGGCCTTCAGACCGCCTTCGTACTTGAACAGCTCCTCCTTGCCGGTACGCTCGTCGCGCAGCAGGAT GCCGACGCCGGAGTTGAGGAAGGACAGTTCGCGGATGCGCTTGGCCAGGATGTCCCAACTGAAGTGGATGTT GCTGAAGGTCTCCGGGGACGGCTTGAAGTGAACTTCGGTACCGGAGCCATCGGTCTCGCCCACTTCGCGCAG TGGGAACTGCGGAACGCCGTGGTGGTAGACCTGTTCCCAGACCTTGTTGTGGCGACGGATGGTCAGGCGCAG CTCATGGGACAGCGCGTTCACCACCGAGACGCCCACACCGTGCAAGCCGCCGGACACTTTGTAGGTGTTGTC GTCGAACTTGCCGCCGGCGTGGAGGACGGTCATGATCACTTCCGCCGCAGAAACCCCTTCTTCCTTGTGGAT ATCCACCGGAATACCGCGTCCATTGTCGCGGACAGTGATCGACTCATCCGTATGGATGGTGATGCTGATTTC GCTGCAGTAACCGGCCAGCGCTTCGTCGATGGAGTTATCCACCACCTCGAACACCATGTGGTGCAGACCGGT GCCATCGTCGGTGTCGCCGATGTACATGCCGGGGCGCTTGCGTACGGCATCCAGCCCCTTCAGCACCTTGAT GCTGGAAGAGTCGTACGTGTTGTTCTCGCTCATGCTTCACTCCCGATGGTCGTGGTCTGA