ViewGene
Locus Name:
GeneID:
Location:

GeneID:6980
TrivialName: PA14_72980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72980
PAO1 Ortholog Locus:
Sequence Length:969
Protein Length:322
Start: 6500224
Stop: 6499256
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08917.1|AE004965_9 (AE004965) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 233/239 (97%), Positives = 235/239 (98%)
Sequence:
ATGCTTCGAGAGATACCCACACACCTGATCGGCGGCCCCCTGGGGGCCGGCAAGACCAGCCTGATCCGCTCG
CTGCTGGCGCAGAAGCCGGCGGGCGAGCGCTGGGCGGTGCTGGTCAACGAGTTCGGCGAGATCGGCCTGGAT
GCCGCGCTGCTGGCCACGGACGTCGAGGGCGTGGCCATCGGCGAGGTGGCGGGCGGGTGCCTCTGCTGCGTC
AATGGCGTGCCGTTCCAGGTGGGGCTCGGTCGCTTGTTGCGTCGGGCACGACCGGACCGGCTGTTCATCGAA
CCCTCCGGGTTGGGACATCCGCTGGCGCTGTGGAAACAGCTGCAGGCTCCTCCCTGGTCCGGCGTCCTGGCC
CTGCAACCCCTGGTAGTGGTGCTGGATGCCGCCGCGCTGGCCTCCGGCCAACCGCTGCCGGAGGCACAGGAA
CAGGCGCTGGAAGCGGCCGGCATGTTGCTGCTGAACAAATCCGAAGCGCTCGACGCGACGCAGCGCTGCGCC
GTGCGCGCGCGCCTGCCGGTCCTGCCGTTGCGCTGGAGCGTGCGCGGCCACCTGGCATTGCGCGATCTGCCG
ACCAGCGTTGCCGGGGAAGGTAGCGCGACGACCTGGGCGGCCCTGCCGGACGCGCCTGCTCAGTTGGGAACG
GTGCTGCCCGCCGAGCGACCGCTGCGCGCCGTGCGCGAGCAGGACGGCCAGTTGGCCATCGGCTGGCGGCTG
GCGCCGTCGGTGCGTTTCGATCGGGTCGCAGTGGACGCCTGGCTGAGCCGTTTGTCCGGACTGCGGCGGGCC
AAGGCGGTGCTGCATTGCGCGGACGGTTGGTATGCAGCGAATGCCGCGCCGTTTGTGGATAACTGGGGCAAG
TCCTCGTGGCGACGGAATAATCGGCTGGAACTGATCCTCGCCGCAGGCGCGGATGAAGAGGCGCTCGAAGAG
GCGTTCCTGGCGTGTCGGATGGTCGCGGAATGA
Translation:
MLREIPTHLIGGPLGAGKTSLIRSLLAQKPAGERWAVLVNEFGEIGLDAALLATDVEGVAIGEVAGGCLCCV
NGVPFQVGLGRLLRRARPDRLFIEPSGLGHPLALWKQLQAPPWSGVLALQPLVVVLDAAALASGQPLPEAQE
QALEAAGMLLLNKSEALDATQRCAVRARLPVLPLRWSVRGHLALRDLPTSVAGEGSATTWAALPDAPAQLGT
VLPAERPLRAVREQDGQLAIGWRLAPSVRFDRVAVDAWLSRLSGLRRAKAVLHCADGWYAANAAPFVDNWGK
SSWRRNNRLELILAAGADEEALEEAFLACRMVAE*
AnnotationID:6981GeneID:6980
AnnotatorUID: danlee
Modification Date/Time: 2006-02-08 16:04:40
Gene Name:
Confidence Code:3
GeneProduct:Putative GTPases (G3E family)
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02492,COG0523
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84318049|ref|ZP_00966478.1|  COG0523: Putative GTPases (G3E family) [Pseudomonas aeruginosa 
C3719]
Length=322

 Score =  633 bits (1633),  Expect = 2e-180
 Identities = 316/322 (98%), Positives = 320/322 (99%), Gaps = 0/322 (0%)

gi|9951870|gb|AAG08917.1|  hypothetical protein PA5532 [Pseudomonas aeruginosa PAO1]
 gi|15600725|ref|NP_254219.1|  hypothetical protein PA5532 [Pseudomonas aeruginosa PAO1]
Length=252

 Score =  463 bits (1192),  Expect = 3e-129
 Identities = 233/239 (97%), Positives = 235/239 (98%), Gaps = 0/239 (0%)

gi|84324852|ref|ZP_00972905.1|  COG0523: Putative GTPases (G3E family) [Pseudomonas aeruginosa 
2192]
Length=199

 Score =  386 bits (991),  Expect = 7e-106
 Identities = 194/197 (98%), Positives = 195/197 (98%), Gaps = 0/197 (0%)








 
Structural Features:
pfam02492, cobW, Cobalamin synthesis protein/P47K.
CD-Length = 328 residues,  99.7% aligned
Score =  180 bits (459), Expect = 2e-46
Identities = 101/343 (29%), Positives = 140/343 (40%), Gaps = 45/343 (13%)
 
COG0523, COG0523, Putative GTPases (G3E family) 
CD-Length = 323 residues,  99.1% aligned
Score =  171 bits (434), Expect = 1e-43
Identities = 95/333 (28%), Positives = 145/333 (43%), Gaps = 33/333 (9%)






   
Genomic Context:






   
Comment:
Confirmed frame-shift results in altered C-terminus as compared to PAO1 PA5532.


















    ReferenceID:13644




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:31036




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33316




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6980_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6980
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8056
                           PA5532_tr
                           translation of PA5532
                           331
                           70.69
                           71.29
                           88
                           1183.0
     

     
     
203052
                           gb|AAG08917.1|AE004965_9
                           (AE004965) hypothetical protein PA5532 [Pseudomonas aeruginosa PAO1]
                           331
                           70.69
                           71.29
                           88
                           1183.0
     

     
     
203053
                           gb|AAO58942.1|
                           (AE016876) cobalamin synthesis protein/P47K family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           332
                           52.40
                           65.96
                           19
                           822.0
     

     
     
203054
                           gb|AAN70924.1|AE016736_7
                           (AE016794) CobW/P47K family protein [Pseudomonas putida KT2440]
                           339
                           48.67
                           63.12
                           33
                           798.0
     

     
     
203055
                           gb|AAA60521.2|
                           (U00007) yeiR [Escherichia coli]
                           322
                           19.56
                           23.91
                           217
                           313.0
     

     






      

          
GC ORFID: 49982How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5763913Stop: 5762945

          
Length: 969


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5532 translation of PA5532Homolog Bit Score 463.0

          
Other Homologs:  t_PA5532 translation of PA5532 (BLASTP 463), psyr_15may02_Scaffold2_revised_gene4170 related to: gi|15600725|ref|NP_254219.1| (NC_002516) hypothetical protein [Pseudomonas aeruginosa] pir||F82955 hypothetical protein PA5532 [imported] - Pseudomonas aeruginosa (strain PAO1) gb|AAG08917.1|AE004965_9 (AE004965) hypothetical protein [Pseudomonas-TRUNCATED- (BLASTP 317)

          
GC ORF Sequence

           
ATGCTTCGAGAGATACCCACACACCTGATCGGCGGCCCCCTGGGGGCCGGCAAGACCAGCCTGATCCGCTCG 
CTGCTGGCGCAGAAGCCGGCGGGCGAGCGCTGGGCGGTGCTGGTCAACGAGTTCGGCGAGATCGGCCTGGAT 
GCCGCGCTGCTGGCCACGGACGTCGAGGGCGTGGCCATCGGCGAGGTGGCGGGCGGGTGCCTCTGCTGCGTC 
AATGGCGTGCCGTTCCAGGTGGGGCTCGGTCGCTTGTTGCGTCGGGCACGACCGGACCGGCTGTTCATCGAA 
CCCTCCGGGTTGGGACATCCGCTGGCGCTGTGGAAACAGCTGCAGGCTCCTCCCTGGTCCGGCGTCCTGGCC 
CTGCAACCCCTGGTAGTGGTGCTGGATGCCGCCGCGCTGGCCTCCGGCCAACCGCTGCCGGAGGCACAGGAA 
CAGGCGCTGGAAGCGGCCGGCATGTTGCTGCTGAACAAATCCGAAGCGCTCGACGCGACGCAGCGCTGCGCC 
GTGCGCGCGCGCCTGCCGGTCCTGCCGTTGCGCTGGAGCGTGCGCGGCCACCTGGCATTGCGCGATCTGCCG 
ACCAGCGTTGCCGGGGAAGGTAGCGCGACGACCTGGGCGGCCCTGCCGGACGCGCCTGCTCAGTTGGGAACG 
GTGCTGCCCGCCGAGCGACCGCTGCGCGCCGTGCGCGAGCAGGACGGCCAGTTGGCCATCGGCTGGCGGCTG 
GCGCCGTCGGTGCGTTTCGATCGGGTCGCAGTGGACGCCTGGCTGAGCCGTTTGTCCGGACTGCGGCGGGCC 
AAGGCGGTGCTGCATTGCGCGGACGGTTGGTATGCAGCGAATGCCGCGCCGTTTGTGGATAACTGGGGCAAG 
TCCTCGTGGCGACGGAATAATCGGCTGGAACTGATCCTCGCCGCAGGCGCGGATGAAGAGGCGCTCGAAGAG 
GCGTTCCTGGCGTGTCGGATGGTCGCGGAATGA