ViewGene
Locus Name:
GeneID:
Location:

GeneID:697
TrivialName: PA14_55750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55750
PAO1 Ortholog Locus:PA4290
Sequence Length:1617
Protein Length:538
Start: 4977659
Stop: 4976043
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07678.1|AE004845_4 (AE004845) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
Identities = 536/538 (99%), Positives = 537/538 (99%)
Sequence:
ATGCAGCCCGCTCGTTCCCGCATCCTCTTCGTCTGCCTGTTGCAGAGCCTGGCCCTGGTTCTCCTGCTGGTC
GGCGCCCGGCATGGCTGGCTGCCGCTGTACCTGGCCCTGCCGCTCGGCGTGGCGCTGCTCTGGTTGCCCTGG
CTGCTTCCCGGCAACCGCACAGCGGTGGCGACCGTCGGCGAGCCCGACATCGCCCGGCTGGCTCGCGACCTG
TCCCATAACACCAGCCAGAACGCATTGTCGGCCGCCGGCGTGGCGTTCTCGGTGAAGCGCCTGGCGGAGAAG
CTGCAATCCCAGCTCGACGCCGCCGAACAGATCGTCGGCAGCGCCGAAGTGATGATCCACACCGAGCGCGCC
ACCTCCAATCTGGCGCGCCAGGCCATGGACGCCGCCACCCGGGCGCGCGCCGGCAGCGACGAGGGCCAGGTG
CTGCTGGCCTCGACCATCGAGCGCATGCATCGGCTCAGCGAGCGGATGGGCGCCAGCCGCGAGGCGATCGAG
GCGCTGAACCAGCGCAGCGAGGACATCCAGCGGGTCACCCTGGTGATCCAGGGCATCGCCAGCCAGACCAAC
CTGCTGGCCCTCAACGCGGCCATCGAGGCGGCCCGCGCCGGCGAGCACGGGCGCGGCTTCGCGGTGGTTGCC
GAAGAGGTGCGCGGCCTGGCCGGACGTACCGCCGAGGCCACCGAGGAAGTCGGCCAGATGGTCGCCGAGATC
CAGCGCCAGACCAGCGAGGTGGTCGAGCAGATCCGCCAGCTTTCCGAAGAGTTGGGCGAAGGGGTCGGCCAG
GTCGAGCTGACCGGTCGGCAACTGGAAGGCATTGCCGAACTGGCGGCCGGGGTGGAGAGCCAGATTACCGAG
ATCGCCCAGGGCGCCGAGATCAACCGCAGCCAACTCGCCAGCCTGTTCGCCGCGGTCGAGCAAGTGCGCGGC
GACCTCAGCGCCAGCGAGGAACAGACCCTGCGCCTCGGCGAAGCCGCCAGCCAGTTGGAGAACCAGGCCGAG
GTGATCAGCGAGCGCCTCGCCGAGGTCAGCCTGGACGCCTACCACCAGTCGGTCTACGACCTCGCCCGGGAG
GGCGCGGCGGCTATCGCCGCTCGCTTCGAGGAGGACGTGCGCAGCGGGCGCATCGACCTCGACGACCTGTTC
GACCGCAGCTACCAGCCGTTGCCCAATACCCAGCCGACCAAGTACCGGACCCGCTTCGACAGCTACACCGAC
CAGGTCCTGCCGGGCATCCAGGAGCAGTTGCTGGAGCGCAACCGCAACCTGGTGTTCGCCATCGCCTGTACC
CCCGAAGGCTACGTGCCCACCCACAATCGCGCCTTCGCCCATCCGCCCAGCGGCGACCCGCAGACGGACGCG
TTGCGCAGCCGCAGCAAGCGCCTGTTCAACGACCGCACCGGGATTCGCTGCGGCAGCCACCAGCAGCCGCTG
TTGCTACAGACCTACACCCGTGACACCGGCGAGCTGATGCACGATCTTTCGGTGCCGATCTTCATCCACGGC
AAGCACTGGGGCGGCCTGCGCCTCGGCTATCGGCCGGAGGGCGCGGAGCCGGGCAAGGCGGCCGCGCCGGCG
GCGCAGGGGCTGAGCCTGGCCTTGAACGGCTAG
Translation:
MQPARSRILFVCLLQSLALVLLLVGARHGWLPLYLALPLGVALLWLPWLLPGNRTAVATVGEPDIARLARDL
SHNTSQNALSAAGVAFSVKRLAEKLQSQLDAAEQIVGSAEVMIHTERATSNLARQAMDAATRARAGSDEGQV
LLASTIERMHRLSERMGASREAIEALNQRSEDIQRVTLVIQGIASQTNLLALNAAIEAARAGEHGRGFAVVA
EEVRGLAGRTAEATEEVGQMVAEIQRQTSEVVEQIRQLSEELGEGVGQVELTGRQLEGIAELAAGVESQITE
IAQGAEINRSQLASLFAAVEQVRGDLSASEEQTLRLGEAASQLENQAEVISERLAEVSLDAYHQSVYDLARE
GAAAIAARFEEDVRSGRIDLDDLFDRSYQPLPNTQPTKYRTRFDSYTDQVLPGIQEQLLERNRNLVFAIACT
PEGYVPTHNRAFAHPPSGDPQTDALRSRSKRLFNDRTGIRCGSHQQPLLLQTYTRDTGELMHDLSVPIFIHG
KHWGGLRLGYRPEGAEPGKAAAPAAQGLSLALNG*
AnnotationID:706GeneID:697
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:34
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis transducer
Cell Localization:()
Synonyms:PA4290
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative methyl-accepting chemotaxis protein
Functional Category Confidence Code:5
COGs:smart00283,pfam00015
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56955.1| (AE016868) methyl-accepting chemotaxis protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 533

 Score =  632 bits (1631), Expect = e-180
 Identities = 333/510 (65%), Positives = 395/510 (77%), Gaps = 1/510 (0%)








 
Structural Features:
smart00283, MA, Methyl-accepting chemotaxis-like domains 
(chemotaxis sensory transducer). 
CD-Length = 262 residues,  96.2% aligned
Score =  163 bits (414), Expect = 4e-41
Identities = 85/255 (33%), Positives = 138/255 (54%), Gaps = 3/255 (1%)

pfam00015, MCPsignal, Methyl-accepting chemotaxis protein (MCP) signaling domain
CD-Length = 251 residues,  98.0% aligned
Score =  149 bits (376), Expect = 1e-36
Identities = 93/246 (37%), Positives = 146/246 (59%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1397




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18539




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36653




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:697_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:697
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1181
                           PA4290_tr
                           translation of PA4290
                           538
                           99.62
                           99.81
                           0
                           2672.0
     

     
     
43943
                           gb|AAG07678.1|AE004845_4
                           (AE004845) probable chemotaxis transducer [Pseudomonas aeruginosa PAO1]
                           538
                           99.62
                           99.81
                           0
                           2672.0
     

     
     
43944
                           gb|AAO56955.1|
                           (AE016868) methyl-accepting chemotaxis protein [Pseudomonas syringae pv. tomato str. DC3000]
                           556
                           60.25
                           72.12
                           41
                           1627.0
     

     
     
43950
                           gb|AAB47275.1|
                           (U86607) 48 kDa antigen [Helicobacter pylori]
                           649
                           17.71
                           29.12
                           327
                           277.0
     

     
     
43948
                           gb|AAD06131.1|
                           (AE001487) methyl-accepting chemotaxis protein (MCP) [Helicobacter pylori J99]
                           649
                           17.71
                           29.58
                           327
                           292.0
     

     






      

          
GC ORFID: 43699How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4290Glimmer Score: 

          
Start: 4241335Stop: 4239719

          
Length: 1617


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4290 translation of PA4290Homolog Bit Score 1033.0

          
Other Homologs:  t_PA4290 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGCCCGCTCGTTCCCGCATCCTCTTCGTCTGCCTGTTGCAGAGCCTGGCCCTGGTTCTCCTGCTGGTC 
GGCGCCCGGCATGGCTGGCTGCCGCTGTACCTGGCCCTGCCGCTCGGCGTGGCGCTGCTCTGGTTGCCCTGG 
CTGCTTCCCGGCAACCGCACAGCGGTGGCGACCGTCGGCGAGCCCGACATCGCCCGGCTGGCTCGCGACCTG 
TCCCATAACACCAGCCAGAACGCATTGTCGGCCGCCGGCGTGGCGTTCTCGGTGAAGCGCCTGGCGGAGAAG 
CTGCAATCCCAGCTCGACGCCGCCGAACAGATCGTCGGCAGCGCCGAAGTGATGATCCACACCGAGCGCGCC 
ACCTCCAATCTGGCGCGCCAGGCCATGGACGCCGCCACCCGGGCGCGCGCCGGCAGCGACGAGGGCCAGGTG 
CTGCTGGCCTCGACCATCGAGCGCATGCATCGGCTCAGCGAGCGGATGGGCGCCAGCCGCGAGGCGATCGAG 
GCGCTGAACCAGCGCAGCGAGGACATCCAGCGGGTCACCCTGGTGATCCAGGGCATCGCCAGCCAGACCAAC 
CTGCTGGCCCTCAACGCGGCCATCGAGGCGGCCCGCGCCGGCGAGCACGGGCGCGGCTTCGCGGTGGTTGCC 
GAAGAGGTGCGCGGCCTGGCCGGACGTACCGCCGAGGCCACCGAGGAAGTCGGCCAGATGGTCGCCGAGATC 
CAGCGCCAGACCAGCGAGGTGGTCGAGCAGATCCGCCAGCTTTCCGAAGAGTTGGGCGAAGGGGTCGGCCAG 
GTCGAGCTGACCGGTCGGCAACTGGAAGGCATTGCCGAACTGGCGGCCGGGGTGGAGAGCCAGATTACCGAG 
ATCGCCCAGGGCGCCGAGATCAACCGCAGCCAACTCGCCAGCCTGTTCGCCGCGGTCGAGCAAGTGCGCGGC 
GACCTCAGCGCCAGCGAGGAACAGACCCTGCGCCTCGGCGAAGCCGCCAGCCAGTTGGAGAACCAGGCCGAG 
GTGATCAGCGAGCGCCTCGCCGAGGTCAGCCTGGACGCCTACCACCAGTCGGTCTACGACCTCGCCCGGGAG 
GGCGCGGCGGCTATCGCCGCTCGCTTCGAGGAGGACGTGCGCAGCGGGCGCATCGACCTCGACGACCTGTTC 
GACCGCAGCTACCAGCCGTTGCCCAATACCCAGCCGACCAAGTACCGGACCCGCTTCGACAGCTACACCGAC 
CAGGTCCTGCCGGGCATCCAGGAGCAGTTGCTGGAGCGCAACCGCAACCTGGTGTTCGCCATCGCCTGTACC 
CCCGAAGGCTACGTGCCCACCCACAATCGCGCCTTCGCCCATCCGCCCAGCGGCGACCCGCAGACGGACGCG 
TTGCGCAGCCGCAGCAAGCGCCTGTTCAACGACCGCACCGGGATTCGCTGCGGCAGCCACCAGCAGCCGCTG 
TTGCTACAGACCTACACCCGTGACACCGGCGAGCTGATGCACGATCTTTCGGTGCCGATCTTCATCCACGGC 
AAGCACTGGGGCGGCCTGCGCCTCGGCTATCGGCCGGAGGGCGCGGAGCCGGGCAAGGCGGCCGCGCCGGCG 
GCGCAGGGGCTGAGCCTGGCCTTGAACGGCTAG