ViewGene

Locus Name:
GeneID:
Location:

GeneID:696
TrivialName: PA14_17930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_17930
PAO1 Ortholog Locus:PA3584
Sequence Length:1539
Protein Length:512
Start: 1541568
Stop: 1540030
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06972.1|AE004779_4 (AE004779) glycerol-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 511/512 (99%), Positives = 511/512 (99%)
Sequence:
ATGAGTCAAGCGCACACCCCCTCCGCTCCACTCGCCGAAGTCTACGATGTCGCCGTGGTCGGCGGTGGCATC
AACGGTGTAGGGATCGCCGCCGACGCAGCCGGGCGCGGCCTGTCCGTGTTCCTTTGCGAACAGCACGACCTG
GCCCAGCACACCTCCTCGGCCAGCAGCAAGCTGATCCACGGCGGCCTGCGCTACCTCGAACACTACGAATTC
CGCCTGGTCCGCGAAGCCCTGGCCGAGCGCGAGGTCCTGCTGGCCAAGGCGCCGCACATCGTCAAGCCGCTG
CGCTTCGTCCTGCCGCACCGTCCGCACCTGCGCCCGGCCTGGATGATCCGCGCCGGCCTGTTCCTCTACGAT
CACCTCGGCAAGCGCGAGAAGCTGCCCGCCTCGCGCGGCCTGCGCTTCACCGGCAGCAGCCCGCTGAAGGCC
GAGATCCGCCGTGGCTTCGAGTACTCCGACTGCGCGGTGGACGATGCGCGCCTGGTGGTGCTCAACGCAATC
TCCGCCCGCGAGCACGGCGCCCACGTCCATACCCGCACCCGCTGCGTCAGCGCCCGTCGCAGCAAGGGACTC
TGGCACCTGCACCTGGAGCGCAGCGACGGTAGCCTGTATTCGATCCGCGCCCGCGCCCTGGTGAACGCCGCC
GGCCCCTGGGTGGCGCGCTTCATCCAGGACGACCTGAAACAGAAGTCGCCCTACGGTATCCGCCTGATCCAG
GGCAGCCACATCATCGTGCCGAAGCTGTACGAAGGCGAGCACGCCTACATCCTGCAGAACGAAGACCGCCGC
ATCGTCTTCGCCATCCCCTATCTGGACCGCTTCACCATGATCGGCACCACCGATCGCGAGTACCAGGGCGAC
CCGGCCAAGGTGGCGATCAGCGAAGAGGAAACCGCCTACCTGCTGCAAGTGGTGAACGCCCATTTCAAGCAG
CAGCTTGCGGCCGCCGACATCCTGCACAGCTTCGCCGGCGTGCGTCCGCTGTGCGACGACGAGTCCGACGAG
CCTTCGGCGATCACCCGCGACTACACCCTGTCGCTCTCCGCCGGCAACGGCGAGCCGCCGCTGCTCTCGGTG
TTCGGCGGCAAGCTGACCACCTACCGCAAGCTGGCCGAATCGGCGCTGGCGCAGCTCCAGCCGTTCTTCGCC
AATCTCGGCCCGGCCTGGACCGCCAAGGCACCGCTGCCGGGCGGCGAGCAGATGCAGAGCGTCGAGGCGCTC
ACCGAGCAACTGGCCAACCGCTACGCCTGGCTCGACCGCGAACTGGCGCTGCGCTGGGCGCGCACCTACGGC
ACCCGGGTGTGGCGCCTGCTGGACGGGGTCAATGGCGAAGCCGATCTCGGCGAGCACCTGGGCGGCGGCCTG
TATGCCCGCGAAGTGGACTACCTGTGCAAGCACGAGTGGGCCCAGGACGCCGAGGACATCCTCTGGCGCCGC
AGCAAGCTCGGCCTGTTCCTCTCGCCGAGCCAGCAGGTGCGCCTCGGCCAGTACCTGCAGAGCGAGCATCCG
CATCGCCCGCGGGTGCATGCGGCCTGA
Translation:
MSQAHTPSAPLAEVYDVAVVGGGINGVGIAADAAGRGLSVFLCEQHDLAQHTSSASSKLIHGGLRYLEHYEF
RLVREALAEREVLLAKAPHIVKPLRFVLPHRPHLRPAWMIRAGLFLYDHLGKREKLPASRGLRFTGSSPLKA
EIRRGFEYSDCAVDDARLVVLNAISAREHGAHVHTRTRCVSARRSKGLWHLHLERSDGSLYSIRARALVNAA
GPWVARFIQDDLKQKSPYGIRLIQGSHIIVPKLYEGEHAYILQNEDRRIVFAIPYLDRFTMIGTTDREYQGD
PAKVAISEEETAYLLQVVNAHFKQQLAAADILHSFAGVRPLCDDESDEPSAITRDYTLSLSAGNGEPPLLSV
FGGKLTTYRKLAESALAQLQPFFANLGPAWTAKAPLPGGEQMQSVEALTEQLANRYAWLDRELALRWARTYG
TRVWRLLDGVNGEADLGEHLGGGLYAREVDYLCKHEWAQDAEDILWRRSKLGLFLSPSQQVRLGQYLQSEHP
HRPRVHAA*
AnnotationID:705GeneID:696
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 09:09:41
Gene Name:glpD
Confidence Code:1
GeneProduct:glycerol-3-phosphate dehydrogenase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:sn-glycerol-3-phosphate dehydrogenase (aerobic)
Functional Category Confidence Code:5
COGs:COG0578,KOG0042
Secondary Functional Category(ies):
EC Number:1.1.99.5
Status:ACTIVE
Pathway:
Homology:
>gb|AAO57626.1| (AE016871) glycerol-3-phosphate dehydrogenase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 512

 Score =  778 bits (2008), Expect = 0.0
 Identities = 372/512 (72%), Positives = 432/512 (84%)

>gb|AAC76451.1| (AE000418) sn-glycerol-3-phosphate dehydrogenase (aerobic)
           [Escherichia coli K12]
          Length = 501

 Score =  585 bits (1508), Expect = e-166
 Identities = 298/488 (61%), Positives = 351/488 (71%), Gaps = 1/488 (0%)

>gb|AAO71457.1| (AE016847) aerobic glycerol-3-phosphate dehydrogenase [Salmonella
           enterica subsp. enterica serovar Typhi Ty2]
          Length = 502

 Score =  569 bits (1467), Expect = e-161
 Identities = 290/488 (59%), Positives = 346/488 (70%), Gaps = 1/488 (0%)
Structural Features:
COG0578, GlpA, Glycerol-3-phosphate dehydrogenase 
[Energy production and conversion]
CD-Length = 532 residues,  97.0% aligned
Score =  562 bits (1450), Expect = 7e-161
Identities = 256/519 (49%), Positives = 309/519 (59%), Gaps = 17/519 (3%)

KOG0042, Glycerol-3-phosphate dehydrogenase 
[Energy production and conversion]
CD-Length = 680 residues,  72.1% aligned
Score =  213 bits (543), Expect = 1e-55
Identities = 151/507 (29%), Positives = 239/507 (47%), Gaps = 53/507 (10%)
Genomic Context:
Comment:
ReferenceID:1395
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18537
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31958
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:696_cdd.html
URL:
ReferenceID:34160
Author/Investigator(s): Schweizer HP, Po C.
Title: Cloning and nucleotide sequence of the glpD gene encoding sn-glycerol-3-phosphate dehydrogenase of Pseudomonas aeruginosa.
PubMed: 8157588
MedLine:
Source:
J Bacteriol. 1994 Apr;176(8):2184-93.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8157588
ReferenceID:34161
Author/Investigator(s): Liao X, Charlebois I, Ouellet C, Morency MJ, Dewar K, Lightfoot J, Foster J, Siehnel R, Schweizer H, Lam JS, Hancock RE, Levesque RC.
Title: Physical mapping of 32 genetic markers on the Pseudomonas aeruginosa PAO1 chromosome.
PubMed: 8581173
MedLine:
Source:
Microbiology. 1996 Jan;142 ( Pt 1):79-86.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8581173
Homologs By Global Alignment
Gene ID:696

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1180 PA3584_tr translation of PA3584 512 99.80 99.80 0 2670.0
43878 gb|AAG06972.1|AE004779_4 (AE004779) glycerol-3-phosphate dehydrogenase [Pseudomonas aeruginosa PAO1] 512 99.80 99.80 0 2670.0
43879 gb|AAA81584.1| (L06231) sn-glycerol-3-phosphate dehydrogenase [Pseudomonas aeruginosa] 517 91.48 92.06 12 2394.0
43880 gb|AAO57626.1| (AE016871) glycerol-3-phosphate dehydrogenase [Pseudomonas syringae pv. tomato str. DC3000] 512 72.65 84.37 0 2008.0
43881 dbj|BAA31550.1| (AB015976) sn-glycerol-3-phosphate dehydrogenase [Pseudomonas tolaasii] 517 72.34 83.94 9 1978.0
GC ORFID: 43698How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3584Glimmer Score:
Start: 3412368Stop: 3413906
Length: 1539
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3584 translation of PA3584Homolog Bit Score 1033.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6128 (ORF: BLASTX 778.0), t_PA3584 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTCAAGCGCACACCCCCTCCGCTCCACTCGCCGAAGTCTACGATGTCGCCGTGGTCGGCGGTGGCATC
AACGGTGTAGGGATCGCCGCCGACGCAGCCGGGCGCGGCCTGTCCGTGTTCCTTTGCGAACAGCACGACCTG
GCCCAGCACACCTCCTCGGCCAGCAGCAAGCTGATCCACGGCGGCCTGCGCTACCTCGAACACTACGAATTC
CGCCTGGTCCGCGAAGCCCTGGCCGAGCGCGAGGTCCTGCTGGCCAAGGCGCCGCACATCGTCAAGCCGCTG
CGCTTCGTCCTGCCGCACCGTCCGCACCTGCGCCCGGCCTGGATGATCCGCGCCGGCCTGTTCCTCTACGAT
CACCTCGGCAAGCGCGAGAAGCTGCCCGCCTCGCGCGGCCTGCGCTTCACCGGCAGCAGCCCGCTGAAGGCC
GAGATCCGCCGTGGCTTCGAGTACTCCGACTGCGCGGTGGACGATGCGCGCCTGGTGGTGCTCAACGCAATC
TCCGCCCGCGAGCACGGCGCCCACGTCCATACCCGCACCCGCTGCGTCAGCGCCCGTCGCAGCAAGGGACTC
TGGCACCTGCACCTGGAGCGCAGCGACGGTAGCCTGTATTCGATCCGCGCCCGCGCCCTGGTGAACGCCGCC
GGCCCCTGGGTGGCGCGCTTCATCCAGGACGACCTGAAACAGAAGTCGCCCTACGGTATCCGCCTGATCCAG
GGCAGCCACATCATCGTGCCGAAGCTGTACGAAGGCGAGCACGCCTACATCCTGCAGAACGAAGACCGCCGC
ATCGTCTTCGCCATCCCCTATCTGGACCGCTTCACCATGATCGGCACCACCGATCGCGAGTACCAGGGCGAC
CCGGCCAAGGTGGCGATCAGCGAAGAGGAAACCGCCTACCTGCTGCAAGTGGTGAACGCCCATTTCAAGCAG
CAGCTTGCGGCCGCCGACATCCTGCACAGCTTCGCCGGCGTGCGTCCGCTGTGCGACGACGAGTCCGACGAG
CCTTCGGCGATCACCCGCGACTACACCCTGTCGCTCTCCGCCGGCAACGGCGAGCCGCCGCTGCTCTCGGTG
TTCGGCGGCAAGCTGACCACCTACCGCAAGCTGGCCGAATCGGCGCTGGCGCAGCTCCAGCCGTTCTTCGCC
AATCTCGGCCCGGCCTGGACCGCCAAGGCACCGCTGCCGGGCGGCGAGCAGATGCAGAGCGTCGAGGCGCTC
ACCGAGCAACTGGCCAACCGCTACGCCTGGCTCGACCGCGAACTGGCGCTGCGCTGGGCGCGCACCTACGGC
ACCCGGGTGTGGCGCCTGCTGGACGGGGTCAATGGCGAAGCCGATCTCGGCGAGCACCTGGGCGGCGGCCTG
TATGCCCGCGAAGTGGACTACCTGTGCAAGCACGAGTGGGCCCAGGACGCCGAGGACATCCTCTGGCGCCGC
AGCAAGCTCGGCCTGTTCCTCTCGCCGAGCCAGCAGGTGCGCCTCGGCCAGTACCTGCAGAGCGAGCATCCG
CATCGCCCGCGGGTGCATGCGGCCTGA