ViewGene
Locus Name:
GeneID:
Location:

GeneID:6957
TrivialName: PA14_71830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71830
PAO1 Ortholog Locus:
Sequence Length:792
Protein Length:263
Start: 6398788
Stop: 6397997
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAM86803.1|AE013927_1 (AE013927) hypothetical [Yersinia pestis KIM]
Identities = 97/217 (44%), Positives = 132/217 (60%), Gaps = 8/217 (3%)
Sequence:
ATGGTTCCGTACGCTCAAGTCGACCTACGCCGACAGCTCCTGGGCCAAGGAACTGAAGTACTACTGGTGAGG
CGCTGGCGAGCCTGGCTGGCGGGCCTGTTGCTGGGCCTGCCGCTGTTGCCGTCCGTCGAGGCCGCGGTGCGC
GCCGAGGACTACGACGCCTTCTGGCTGTGGAGCGGCGTCGCGCCGCAGCCGGCGCTGGCGCGGGCCGAGACG
CTGTACATCCTGCAGGGACAGATCAGCCAGTCGCGCCGGCGCCCCGGCGAGGGCGTGCGGCTGATCGCCCAG
GGCATCTCGGTGCCGCGCCTGGCGCGGGGCGAGGTCTGGGTGGTGTACCGCGCCCATACCCTGCGCTGGACG
CCGCAGATCTACCAGGCCGTGCTGAACCAGGTGCAGCGCTGGAAGCGTGCCGGCAACCCGGTGGTCGGCATC
CAGATCGACTTCGATGCGCGTACCCGCTACCTCGACGAGTACGTCGATTTCCTCCGCGACCTGCGCCAGCGC
CTGCCCCGCGAATACCGCTTGAGCATCACCGGGCTGCTCGACTGGGGCAGCAACGCCGAGCCGGCGGCGATC
AACCGGCTCAAGGGCGTGGTCGACGAAGTGGTGGTGCAGACCTACCAGGGGCGCCACAGCATTCCCAACCAC
GCCGCCTACCTCCCGCGGGTCAGCCGCCTGCAGCTGCCGTACCGGATCGGCCTGGTCCAGGGCGGCGACTGG
CAAGCCCCCGACTACCTGGAAAAGAGCCCCTGGTTCAGGGGCTACGTGGTGTTCCTGCTCAACCCTCAGTGA
Translation:
MVPYAQVDLRRQLLGQGTEVLLVRRWRAWLAGLLLGLPLLPSVEAAVRAEDYDAFWLWSGVAPQPALARAET
LYILQGQISQSRRRPGEGVRLIAQGISVPRLARGEVWVVYRAHTLRWTPQIYQAVLNQVQRWKRAGNPVVGI
QIDFDARTRYLDEYVDFLRDLRQRLPREYRLSITGLLDWGSNAEPAAINRLKGVVDEVVVQTYQGRHSIPNH
AAYLPRVSRLQLPYRIGLVQGGDWQAPDYLEKSPWFRGYVVFLLNPQ*
AnnotationID:6958GeneID:6957
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 16:04:38
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:13602




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30993




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6957
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
203048
                           gb|AAM86803.1|AE013927_1
                           (AE013927) hypothetical [Yersinia pestis KIM]
                           282
                           37.23
                           52.12
                           46
                           474.0
     

     
     
203049
                           emb|CAC89715.1|
                           (AJ414145) hypothetical protein [Yersinia pestis CO92]
                           283
                           34.98
                           47.70
                           65
                           462.0
     

     






      

          
GC ORFID: 49959How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5662477Stop: 5661686

          
Length: 792


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGTTCCGTACGCTCAAGTCGACCTACGCCGACAGCTCCTGGGCCAAGGAACTGAAGTACTACTGGTGAGG 
CGCTGGCGAGCCTGGCTGGCGGGCCTGTTGCTGGGCCTGCCGCTGTTGCCGTCCGTCGAGGCCGCGGTGCGC 
GCCGAGGACTACGACGCCTTCTGGCTGTGGAGCGGCGTCGCGCCGCAGCCGGCGCTGGCGCGGGCCGAGACG 
CTGTACATCCTGCAGGGACAGATCAGCCAGTCGCGCCGGCGCCCCGGCGAGGGCGTGCGGCTGATCGCCCAG 
GGCATCTCGGTGCCGCGCCTGGCGCGGGGCGAGGTCTGGGTGGTGTACCGCGCCCATACCCTGCGCTGGACG 
CCGCAGATCTACCAGGCCGTGCTGAACCAGGTGCAGCGCTGGAAGCGTGCCGGCAACCCGGTGGTCGGCATC 
CAGATCGACTTCGATGCGCGTACCCGCTACCTCGACGAGTACGTCGATTTCCTCCGCGACCTGCGCCAGCGC 
CTGCCCCGCGAATACCGCTTGAGCATCACCGGGCTGCTCGACTGGGGCAGCAACGCCGAGCCGGCGGCGATC 
AACCGGCTCAAGGGCGTGGTCGACGAAGTGGTGGTGCAGACCTACCAGGGGCGCCACAGCATTCCCAACCAC 
GCCGCCTACCTCCCGCGGGTCAGCCGCCTGCAGCTGCCGTACCGGATCGGCCTGGTCCAGGGCGGCGACTGG 
CAAGCCCCCGACTACCTGGAAAAGAGCCCCTGGTTCAGGGGCTACGTGGTGTTCCTGCTCAACCCTCAGTGA