ViewGene
Locus Name:
GeneID:
Location:

GeneID:6953
TrivialName: PA14_71760
AnnotatorUID: danlee
Modification Date/Time:2006-05-03 15:03:39
LocusName:PA14_71760
PAO1 Ortholog Locus:
Sequence Length:216
Protein Length:71
Start: 6393988
Stop: 6393773
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAO58932.1| (AE016876) hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
Identities = 35/74 (47%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Sequence:
ATGCCCCGTCATAGCGATGCCAATGCCCAGCACGTGGATTCGAAAACCCGCCGCAAGCTCGAAGACCAGCGG
CGCATGCAATTCCGCCGGGCGATCGAGGACCACTGCGAAGAACTGCGCCTGCGCCAGGAACTGGCCGACTAC
CCCGAGCTGGTAGCCGCCGCCTACCTCAGCTCGAACCGCCAGGGCCGGCGAAGCGCCCAGCGAGCTGGCTGA
Translation:
MPRHSDANAQHVDSKTRRKLEDQRRMQFRRAIEDHCEELRLRQELADYPELVAAAYLSSNRQGRRSAQRAG*
AnnotationID:6954GeneID:6953
AnnotatorUID: danlee
Modification Date/Time: 2006-06-20 12:12:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|84318148|ref|ZP_00966577.1|  hypothetical protein PaerC_01004140 [Pseudomonas aeruginosa C3719]
 gi|94417142|ref|ZP_01296961.1|  hypothetical protein PaerP_01000937 [Pseudomonas aeruginosa PA7]
Length=71

 Score =  144 bits (363),  Expect = 1e-33
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)

gi|84324901|ref|ZP_00972953.1|  hypothetical protein Paer2_01003824 [Pseudomonas aeruginosa 2192]
Length=70

 Score =  138 bits (347),  Expect = 7e-32
 Identities = 70/71 (98%), Positives = 70/71 (98%), Gaps = 1/71 (1%)






 
Structural Features:
CDD Search: No hits above threshold.






   
Genomic Context:






   
Comment:
ORF present but not annotated in PAO1.


















    ReferenceID:13595




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30985




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









      

          
GC ORFID: 49955How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5657677Stop: 5657462

          
Length: 216


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCCCGTCATAGCGATGCCAATGCCCAGCACGTGGATTCGAAAACCCGCCGCAAGCTCGAAGACCAGCGG 
CGCATGCAATTCCGCCGGGCGATCGAGGACCACTGCGAAGAACTGCGCCTGCGCCAGGAACTGGCCGACTAC 
CCCGAGCTGGTAGCCGCCGCCTACCTCAGCTCGAACCGCCAGGGCCGGCGAAGCGCCCAGCGAGCTGGCTGA