ViewGene
Locus Name:
GeneID:
Location:

GeneID:694
TrivialName: PA14_30430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30430
PAO1 Ortholog Locus:PA2603
Sequence Length:1584
Protein Length:527
Start: 2636045
Stop: 2634462
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05991.1|AE004689_3 (AE004689) probable thiosulfate sulfurtransferase [Pseudomonas aeruginosa PAO1]
Identities = 522/527 (99%), Positives = 524/527 (99%)
Sequence:
ATGAGCCAGATCGCCGTACGCACCTTCCACGATATCCGCGCCGCTCTCCTCGCCCGCCGGGAGCTGGCGCTG
CTCGACGTGCGCGAGGAGGACCCGTTCGCCCAGGCCCATCCCCTGTTCGCCGCCAACCTGCCGCTGTCCAGG
CTGGAACTGGAGATCCATGCCCGGGTGCCGCGCCGCGACACGCCGATTACCGTCTACGACGACGGCGAAGGC
CTGGCGCCGGTCGCCGCGCAACGCCTCCTCGACCTCGGCTACAGCGACGTGGCCTTGCTCGATGGCGGCCTG
TCCGGTTGGCGCAACGCCGGCGGCGAGCTGTTCAGGGATGTGAACGTGCCGAGCAAGGCCTTCGGCGAACTG
GTGGAGGCCGAGCGCCACACGCCATCGCTGGCCGCGGAGGAAGTACAGGCTTTGCTCGACGCCAGGGCCGAC
GCGGTGATCCTGGATGCCCGTCGTTTCGACGAATACCAGACCATGAGTATCCCCGGCGGCATCAGCGTGCCC
GGCGCCGAACTGGTGCTGCGCGTCGCCGAACTGGCGCCGGACCCGCGCACCCGGGTGATAGTCAACTGTGCC
GGGCGCACTCGTAGCATCATCGGTACCCAGTCGCTGCTCAACGCCGGCATCCCCAACCCGGTGGCGGCATTA
CGCAACGGCACCATCGGCTGGACGCTGGCCGGTCAGCAACTGGAACACGGCCAGACGCGACGCTTCGGTGCG
ATCTCGCAGGACACTCGCAAGGCCGCCGCCCAGCGCGCCCGTGCCGTCGCCGACCGCGCCGGCGTCGAACGC
CTCGACCTGGCCGGTCTGGCCCAATGGCAGGACGAGCACGACCGCACCACCTACCTGCTCGACGTACGCCCG
CCCGAGGAATACGAAGCCGGTCACCTGCCTGGCTCCCGCTCCACGCCCGGTGGCCAGCTGGTTCAGGAAACC
GACCATGTCGCCAGCGTGCGCGGCGCGCGCCTGGTACTGGTGGACGACGATGGCGTACGCGCCAACATGAGC
GCCTCCTGGCTGGCCCAGATGGGCTGGCAGGTCGCGGTACTGGACGGACTCTCCGACGCCGACTTCAGCGAG
AGGGGCGCCTGGAGCGCGCCGCTGCCGGGGCAACCCCGGGCCGACACCATCGACCCGACCACCCTCGCCGCC
TGGCTGGGCGAACCGGGCACCCGGGTGCTCGACTTCACCGCCAGCGCCAACTATGCGAAACGCCACATCCCC
GGCGCCGCCTGGGTATTGCGCAGCCAGTTGAAGCAGGCACTGGAACGGCTGGGCACGGCCGAGCGCTACGTA
CTCACCTGCGGCAGCAGCCTGCTGGCGCGCTTCGCCGTGGCGGAAGTCCAGGCACTCAGCGGCAAGCCGGTG
TTCCTTCTCGACGGCGGCACCAGCGCCTGGGTCGCCGCGGGCCTGCCGACGGAAGACGGCGAAAGCCTGTTG
GCGTCGCCGCGCATCGACCGCTACCGCCGCCCCTACGAAGGTACCGACAATCCGCGCGAAGCGATGCAGGGC
TACCTGGACTGGGAGTTCGGCCTGGTGGAGCAACTCGGTCGCGACGGAACCCACGGCTTCTTCGTGATCTGA
Translation:
MSQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLELEIHARVPRRDTPITVYDDGEG
LAPVAAQRLLDLGYSDVALLDGGLSGWRNAGGELFRDVNVPSKAFGELVEAERHTPSLAAEEVQALLDARAD
AVILDARRFDEYQTMSIPGGISVPGAELVLRVAELAPDPRTRVIVNCAGRTRSIIGTQSLLNAGIPNPVAAL
RNGTIGWTLAGQQLEHGQTRRFGAISQDTRKAAAQRARAVADRAGVERLDLAGLAQWQDEHDRTTYLLDVRP
PEEYEAGHLPGSRSTPGGQLVQETDHVASVRGARLVLVDDDGVRANMSASWLAQMGWQVAVLDGLSDADFSE
RGAWSAPLPGQPRADTIDPTTLAAWLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQALERLGTAERYV
LTCGSSLLARFAVAEVQALSGKPVFLLDGGTSAWVAAGLPTEDGESLLASPRIDRYRRPYEGTDNPREAMQG
YLDWEFGLVEQLGRDGTHGFFVI*
AnnotationID:703GeneID:694
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 11:11:25
Gene Name:
Confidence Code:3
GeneProduct:thiosulfate sulfurtransferase
Cell Localization:()
Synonyms:PA2603
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative rhodanese-related sulfurtransferase
Functional Category Confidence Code:5
COGs:COG0607
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55312.1| (AE016862) rhodanese-like domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 527

 Score =  773 bits (1996), Expect = 0.0
 Identities = 382/527 (72%), Positives = 434/527 (82%)








 
Structural Features:
COG0607, PspE, Rhodanese-related sulfurtransferase 
[Inorganic ion transport and metabolism]
CD-Length = 110 residues,  99.1% aligned
Score = 63.8 bits (154), Expect = 4e-11
Identities = 39/110 (35%), Positives = 50/110 (45%), Gaps = 2/110 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18533




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33171




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:694_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:694
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1178
                           PA2603_tr
                           translation of PA2603
                           527
                           99.05
                           99.43
                           0
                           2675.0
     

     
     
43859
                           gb|AAG05991.1|AE004689_3
                           (AE004689) probable thiosulfate sulfurtransferase [Pseudomonas aeruginosa PAO1]
                           527
                           99.05
                           99.43
                           0
                           2675.0
     

     
     
43860
                           gb|AAO55312.1|
                           (AE016862) rhodanese-like domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           527
                           72.48
                           82.35
                           0
                           1996.0
     

     
     
43861
                           dbj|BAC53231.1|
                           (AP005964) bll7966 [Bradyrhizobium japonicum USDA 110]
                           538
                           47.39
                           55.01
                           130
                           1169.0
     

     
     
43862
                           emb|CAE32038.1|
                           (BX640441) Putative transferase [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           556
                           44.06
                           55.57
                           52
                           1049.0
     

     






      

          
GC ORFID: 43696How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2603Glimmer Score: 

          
Start: 2317881Stop: 2319464

          
Length: 1584


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2603 translation of PA2603Homolog Bit Score 1035.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7656 (ORF: BLASTX 781.0), t_PA2603 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCCAGATCGCCGTACGCACCTTCCACGATATCCGCGCCGCTCTCCTCGCCCGCCGGGAGCTGGCGCTG 
CTCGACGTGCGCGAGGAGGACCCGTTCGCCCAGGCCCATCCCCTGTTCGCCGCCAACCTGCCGCTGTCCAGG 
CTGGAACTGGAGATCCATGCCCGGGTGCCGCGCCGCGACACGCCGATTACCGTCTACGACGACGGCGAAGGC 
CTGGCGCCGGTCGCCGCGCAACGCCTCCTCGACCTCGGCTACAGCGACGTGGCCTTGCTCGATGGCGGCCTG 
TCCGGTTGGCGCAACGCCGGCGGCGAGCTGTTCAGGGATGTGAACGTGCCGAGCAAGGCCTTCGGCGAACTG 
GTGGAGGCCGAGCGCCACACGCCATCGCTGGCCGCGGAGGAAGTACAGGCTTTGCTCGACGCCAGGGCCGAC 
GCGGTGATCCTGGATGCCCGTCGTTTCGACGAATACCAGACCATGAGTATCCCCGGCGGCATCAGCGTGCCC 
GGCGCCGAACTGGTGCTGCGCGTCGCCGAACTGGCGCCGGACCCGCGCACCCGGGTGATAGTCAACTGTGCC 
GGGCGCACTCGTAGCATCATCGGTACCCAGTCGCTGCTCAACGCCGGCATCCCCAACCCGGTGGCGGCATTA 
CGCAACGGCACCATCGGCTGGACGCTGGCCGGTCAGCAACTGGAACACGGCCAGACGCGACGCTTCGGTGCG 
ATCTCGCAGGACACTCGCAAGGCCGCCGCCCAGCGCGCCCGTGCCGTCGCCGACCGCGCCGGCGTCGAACGC 
CTCGACCTGGCCGGTCTGGCCCAATGGCAGGACGAGCACGACCGCACCACCTACCTGCTCGACGTACGCCCG 
CCCGAGGAATACGAAGCCGGTCACCTGCCTGGCTCCCGCTCCACGCCCGGTGGCCAGCTGGTTCAGGAAACC 
GACCATGTCGCCAGCGTGCGCGGCGCGCGCCTGGTACTGGTGGACGACGATGGCGTACGCGCCAACATGAGC 
GCCTCCTGGCTGGCCCAGATGGGCTGGCAGGTCGCGGTACTGGACGGACTCTCCGACGCCGACTTCAGCGAG 
AGGGGCGCCTGGAGCGCGCCGCTGCCGGGGCAACCCCGGGCCGACACCATCGACCCGACCACCCTCGCCGCC 
TGGCTGGGCGAACCGGGCACCCGGGTGCTCGACTTCACCGCCAGCGCCAACTATGCGAAACGCCACATCCCC 
GGCGCCGCCTGGGTATTGCGCAGCCAGTTGAAGCAGGCACTGGAACGGCTGGGCACGGCCGAGCGCTACGTA 
CTCACCTGCGGCAGCAGCCTGCTGGCGCGCTTCGCCGTGGCGGAAGTCCAGGCACTCAGCGGCAAGCCGGTG 
TTCCTTCTCGACGGCGGCACCAGCGCCTGGGTCGCCGCGGGCCTGCCGACGGAAGACGGCGAAAGCCTGTTG 
GCGTCGCCGCGCATCGACCGCTACCGCCGCCCCTACGAAGGTACCGACAATCCGCGCGAAGCGATGCAGGGC 
TACCTGGACTGGGAGTTCGGCCTGGTGGAGCAACTCGGTCGCGACGGAACCCACGGCTTCTTCGTGATCTGA