ViewGene

Locus Name:
GeneID:
Location:

GeneID:693
TrivialName: PA14_39130
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39130
PAO1 Ortholog Locus:PA1964
Sequence Length:1566
Protein Length:521
Start: 3485688
Stop: 3487253
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05352.1|AE004623_2 (AE004623) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 521/521 (100%), Positives = 521/521 (100%)
Sequence:
ATGCAGTTCGGCGCCAAGCCGCTGTTCGAGAACGTTTCCGTCAAGTTCGGCAACGGCAACCGCTACGGCCTG
ATCGGCGCCAACGGTTGCGGCAAGTCGACCTTCATGAAGATCCTCGGCAACGACCTGGAGCCGAGCGCCGGC
CAGGTCATGCTGGAACCCAACGTGCGCCTGGGCAAGCTGCGCCAGGACCAGTTCGCCTACGAGGACTTCAGC
GTCATCGATACGGTGATCATGGGCCACGAGGAACTCTGGGCGGTGAAGGCCGAGCGCGACCGCATCTACTCC
CTGCCGGAAATGAGCGAGGCAGATGGCATGGCGGTGGCCGAGCTGGAAGTCCAGTTCGCCGAGTTCGACGGC
TACACCGCCGAGTCCCGCGCCGGCGAGCTGCTGCTCGGCCTGGGCATCCCGCTGGAGCAGCACTTCGGCCCG
ATGAGCGCCGTCGCTCCCGGCTGGAAGCTGCGCGTACTGCTGGCCCAGGCGCTGTTCTCGGACCCGGACGTG
CTGCTGCTCGACGAACCGACCAACCACCTGGACATCAACACCATCCGCTGGCTGGAAGGCGTGCTCACCGCG
CGCAACAGCACCATGATCATCATTTCCCACGATCGGCACTTCCTGAACAGCGTCTGCACCCACATGGCCGAC
CTGGACTACGGCGAGCTGCGCCTGTTCCCGGGCAACTACGACGAGTACATGACCGCCGCCGAACAGGCCCGC
GAGCGCCTGCTGTCGGACAACGCCAAGAAGAAGGCGCAGATCGCCGAGCTGCAATCCTTCGTCAGCCGCTTC
TCGGCCAACGCCTCCAAGGCCAAGCAGGCCACCAGCCGCGCCCGACAGATCGACAAGATCCAGCTGGAAGAG
GTCAAGCCGTCCAGCCGGGTCAGCCCGTTCATCCGCTTCGAGCAATACAAGAAGCTGCACCGCCAGGCGGTG
ACCGTGGAAAACATCAGCAAGGGCTATGACGGCAAGCCGCTGTTCAAGGGCCTGAGCCTGCAGGTCGAGGCC
GGCGAGCGCGTCGCCATCATCGGCCCCAACGGCATCGGCAAGACCACCCTGTTGCGCTGCCTGGTCGGCGAC
CTGCCGGTGGACGGCGGCGAGGTGAAATGGACCGACAGCGCCGACGTCGGCTATTTCGCCCAGGACCATGCC
GACGACTTCGCCGACGACATGAGCCTGTTCGACTGGATGGCCCAGTGGACCCAGGGCGGCGAACAACTGGTG
CGCGGCACCCTCGGCCGCATGCTGTTCTCCAACGACGAGATCAAGAAGTCGGTGAAAGTGATCTCCGGCGGC
GAGCAGGGCCGCATGCTGTTCGGCCGGCTGATCCTCAAGCGTCCCAACGTGCTGGTGATGGACGAGCCGACC
AACCACCTGGACATGGAGTCCATCGAGGCGCTGAACCTGGCGCTGGACAACTATCCGGGCACGCTGATCTTC
GTCAGCCACGACCGCGAATTCGTTTCCTCGCTGGCTACCCGCATCATCGAGCTGGGCGAGAACGGCGTGACC
GACTTCAGCGGCAGCTATGACGACTACCTGCGCAGCCAGGGCGTGATCGTCTGA
Translation:
MQFGAKPLFENVSVKFGNGNRYGLIGANGCGKSTFMKILGNDLEPSAGQVMLEPNVRLGKLRQDQFAYEDFS
VIDTVIMGHEELWAVKAERDRIYSLPEMSEADGMAVAELEVQFAEFDGYTAESRAGELLLGLGIPLEQHFGP
MSAVAPGWKLRVLLAQALFSDPDVLLLDEPTNHLDINTIRWLEGVLTARNSTMIIISHDRHFLNSVCTHMAD
LDYGELRLFPGNYDEYMTAAEQARERLLSDNAKKKAQIAELQSFVSRFSANASKAKQATSRARQIDKIQLEE
VKPSSRVSPFIRFEQYKKLHRQAVTVENISKGYDGKPLFKGLSLQVEAGERVAIIGPNGIGKTTLLRCLVGD
LPVDGGEVKWTDSADVGYFAQDHADDFADDMSLFDWMAQWTQGGEQLVRGTLGRMLFSNDEIKKSVKVISGG
EQGRMLFGRLILKRPNVLVMDEPTNHLDMESIEALNLALDNYPGTLIFVSHDREFVSSLATRIIELGENGVT
DFSGSYDDYLRSQGVIV*
AnnotationID:702GeneID:693
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 15:03:01
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:ybiT
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0488
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN68544.1|AE016486_7 (AE016785) ABC transporter, ATP-binding protein [Pseudomonas putida
           KT2440]
          Length = 528

 Score =  913 bits (2359), Expect = 0.0
 Identities = 455/521 (87%), Positives = 485/521 (93%), Gaps = 1/521 (0%)

>gb|AAN79379.1|AE016757_283 (AE016757) Hypothetical ABC transporter ATP-binding protein ybiT
           [Escherichia coli CFT073]
          Length = 530

 Score =  800 bits (2065), Expect = 0.0
 Identities = 386/521 (74%), Positives = 462/521 (88%), Gaps = 2/521 (0%)

>gb|AAN42404.1|AE015106_1 (AE015106) putative ATP-binding component of a transport system
           [Shigella flexneri 2a str. 301]
          Length = 530

 Score =  798 bits (2061), Expect = 0.0
 Identities = 385/521 (73%), Positives = 462/521 (88%), Gaps = 2/521 (0%)

Structural Features:
COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains
CD-Length = 530 residues,  97.9% aligned
Score =  589 bits (1521), Expect = 2e-169
Identities = 223/525 (42%), Positives = 335/525 (63%), Gaps = 12/525 (2%)
Genomic Context:
Comment:
ReferenceID:1389
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18531
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32761
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:693_cdd.html
URL:
Homologs By Global Alignment
Gene ID:693

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1177 PA1964_tr translation of PA1964 521 99.99 99.99 0 2678.0
43779 gb|AAG05352.1|AE004623_2 (AE004623) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1] 521 99.99 99.99 0 2678.0
43781 gb|AAO56266.1| (AE016865) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 521 86.56 92.32 0 2342.0
43780 gb|AAN68544.1|AE016486_7 (AE016785) ABC transporter, ATP-binding protein [Pseudomonas putida KT2440] 529 86.01 91.68 9 2361.0
43794 emb|CAE13831.1| (BX571864) Hypothetical ABC transporter ATP-binding protein YbiT [Photorhabdus luminescens subsp. laumondii TTO1] 531 72.88 85.68 10 2048.0
GC ORFID: 43695How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1964Glimmer Score:
Start: 1468223Stop: 1466658
Length: 1566
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1964 translation of PA1964Homolog Bit Score 1036.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene89 (ORF: BLASTX 917.0), t_PA1964 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGTTCGGCGCCAAGCCGCTGTTCGAGAACGTTTCCGTCAAGTTCGGCAACGGCAACCGCTACGGCCTG
ATCGGCGCCAACGGTTGCGGCAAGTCGACCTTCATGAAGATCCTCGGCAACGACCTGGAGCCGAGCGCCGGC
CAGGTCATGCTGGAACCCAACGTGCGCCTGGGCAAGCTGCGCCAGGACCAGTTCGCCTACGAGGACTTCAGC
GTCATCGATACGGTGATCATGGGCCACGAGGAACTCTGGGCGGTGAAGGCCGAGCGCGACCGCATCTACTCC
CTGCCGGAAATGAGCGAGGCAGATGGCATGGCGGTGGCCGAGCTGGAAGTCCAGTTCGCCGAGTTCGACGGC
TACACCGCCGAGTCCCGCGCCGGCGAGCTGCTGCTCGGCCTGGGCATCCCGCTGGAGCAGCACTTCGGCCCG
ATGAGCGCCGTCGCTCCCGGCTGGAAGCTGCGCGTACTGCTGGCCCAGGCGCTGTTCTCGGACCCGGACGTG
CTGCTGCTCGACGAACCGACCAACCACCTGGACATCAACACCATCCGCTGGCTGGAAGGCGTGCTCACCGCG
CGCAACAGCACCATGATCATCATTTCCCACGATCGGCACTTCCTGAACAGCGTCTGCACCCACATGGCCGAC
CTGGACTACGGCGAGCTGCGCCTGTTCCCGGGCAACTACGACGAGTACATGACCGCCGCCGAACAGGCCCGC
GAGCGCCTGCTGTCGGACAACGCCAAGAAGAAGGCGCAGATCGCCGAGCTGCAATCCTTCGTCAGCCGCTTC
TCGGCCAACGCCTCCAAGGCCAAGCAGGCCACCAGCCGCGCCCGACAGATCGACAAGATCCAGCTGGAAGAG
GTCAAGCCGTCCAGCCGGGTCAGCCCGTTCATCCGCTTCGAGCAATACAAGAAGCTGCACCGCCAGGCGGTG
ACCGTGGAAAACATCAGCAAGGGCTATGACGGCAAGCCGCTGTTCAAGGGCCTGAGCCTGCAGGTCGAGGCC
GGCGAGCGCGTCGCCATCATCGGCCCCAACGGCATCGGCAAGACCACCCTGTTGCGCTGCCTGGTCGGCGAC
CTGCCGGTGGACGGCGGCGAGGTGAAATGGACCGACAGCGCCGACGTCGGCTATTTCGCCCAGGACCATGCC
GACGACTTCGCCGACGACATGAGCCTGTTCGACTGGATGGCCCAGTGGACCCAGGGCGGCGAACAACTGGTG
CGCGGCACCCTCGGCCGCATGCTGTTCTCCAACGACGAGATCAAGAAGTCGGTGAAAGTGATCTCCGGCGGC
GAGCAGGGCCGCATGCTGTTCGGCCGGCTGATCCTCAAGCGTCCCAACGTGCTGGTGATGGACGAGCCGACC
AACCACCTGGACATGGAGTCCATCGAGGCGCTGAACCTGGCGCTGGACAACTATCCGGGCACGCTGATCTTC
GTCAGCCACGACCGCGAATTCGTTTCCTCGCTGGCTACCCGCATCATCGAGCTGGGCGAGAACGGCGTGACC
GACTTCAGCGGCAGCTATGACGACTACCTGCGCAGCCAGGGCGTGATCGTCTGA