ViewGene
Locus Name:
GeneID:
Location:

GeneID:6922
TrivialName: PA14_70220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70220
PAO1 Ortholog Locus:
Sequence Length:192
Protein Length:63
Start: 6261360
Stop: 6261551
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08703.1|AE004944_7 (AE004944) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 48/50 (96%), Positives = 48/50 (96%)
Sequence:
TTGGCAGTTCAGCGAGCGCCATCAGCGGCTGATCGACGCGCCGGCGCTACCCTGCTGCACACGGAAACCCGG
GTGTTCTGCCCCGATCGCGCCAGCCGCCTGCGCTTCACCCCCTACTGGTTGGCGATCCGCCCGGTCAGCGGA
CTGATCCGCCGGCGCCTGCTGGCGGGCATCGAGCGGCGCCTGGGCTGA
Translation:
MAVQRAPSAADRRAGATLLHTETRVFCPDRASRLRFTPYWLAIRPVSGLIRRRLLAGIERRLG*
AnnotationID:6923GeneID:6922
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 11:11:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9951635|gb|AAG08703.1|  hypothetical protein PA5318 [Pseudomonas aeruginosa PAO1]
 gi|15600511|ref|NP_254005.1|  hypothetical protein PA5318 [Pseudomonas aeruginosa PAO1]
 gi|84323976|ref|ZP_00972041.1|  hypothetical protein Paer2_01004682 [Pseudomonas aeruginosa 2192]
 gi|84317986|ref|ZP_00966420.1|  hypothetical protein PaerC_01004271 [Pseudomonas aeruginosa C3719]
Length=182

 Score =  100 bits (248),  Expect = 2e-20
 Identities = 48/50 (96%), Positives = 48/50 (96%), Gaps = 0/50 (0%)

gi|39649643|emb|CAE28165.1|  conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
 gi|39935790|ref|NP_948066.1|  hypothetical protein RPA2723 [Rhodopseudomonas palustris CGA009]
Length=187

 Score = 71.2 bits (173),  Expect = 1e-11
 Identities = 32/47 (68%), Positives = 37/47 (78%), Gaps = 0/47 (0%)








 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:
Homology to C-terminus of PAO1 PA5318


















    ReferenceID:16667




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30923




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6922
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8053
                           PA5318_tr
                           translation of PA5318
                           187
                           27.27
                           28.34
                           129
                           249.0
     

     
     
203045
                           gb|AAG08703.1|AE004944_7
                           (AE004944) hypothetical protein PA5318 [Pseudomonas aeruginosa PAO1]
                           187
                           27.27
                           28.34
                           129
                           249.0
     

     






      

          
GC ORFID: 49924How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5525049Stop: 5525240

          
Length: 192


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5318 translation of PA5318Homolog Bit Score 100.0

          
Other Homologs:  t_PA5318 translation of PA5318 (BLASTP 100)

          
GC ORF Sequence

           
TTGGCAGTTCAGCGAGCGCCATCAGCGGCTGATCGACGCGCCGGCGCTACCCTGCTGCACACGGAAACCCGG 
GTGTTCTGCCCCGATCGCGCCAGCCGCCTGCGCTTCACCCCCTACTGGTTGGCGATCCGCCCGGTCAGCGGA 
CTGATCCGCCGGCGCCTGCTGGCGGGCATCGAGCGGCGCCTGGGCTGA