ViewGene
Locus Name:
GeneID:
Location:

GeneID:692
TrivialName: PA14_12280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12280
PAO1 Ortholog Locus:PA3984
Sequence Length:1536
Protein Length:511
Start: 1061052
Stop: 1059517
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07371.1|AE004816_7 (AE004816) apolipoprotein N-acyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 508/511 (99%), Positives = 509/511 (99%)
Sequence:
ATGCGTTGGATTTCTCGTCCCGGCTGGCCCGGACACCTGCTGGCACTCGCCGCAGGCGCGCTCACACCCCTG
GCCCTGGCGCCCTTCGTCTACTGGCCGCTGGCGATCCTCTCGATCGCCCTGCTCTATCTCGGCTTGCGCGGC
CTTCCCGGCAAGTCCGCCCTGTGGCGCGGCTGGTGGTACGGTTTCGGCGCGTTCGGCGCCGGCACCAGCTGG
ATCTACGTCAGTATCCATGACTACGGCGCCGCCTCGGTGCCGCTGGCGAGCTTCCTCATGCTCGGCTTCACC
GCCGGCGTCGCCTTCTTCTTCGCCCTGCCGGCCTGGCTGTGGGCGCGCTGCCTGCGCCGCGACAACGCGCCG
CTGGGCGACGCCCTGGCGTTCGCCGCCCTGTGGCTGGCACTGGAGCTGTTCCGCAGTTGGTTCCTTACCGGT
TTCCCCTGGCTCTACGCCGGCTATAGCCAGTTGCAGGGACCGCTGGCCGGGCTGGTGCCGGTGGGTGGCGTA
TGGCTGTCCTCCTTCGTCATCGCCCTCAGCGCGGCCCTGCTGGTGAACCTGCCGCGCCTCTTCCCGCACGGT
GCCAGCCTGCTTCTGGGGCTGGTCCTGCTGCTCGGCCCGTGGGCGGCCGGCCTCTATCTCAAGGGCCACGCC
TGGACCCATTCGGCCGGCGAACCGCTGAGGGTAGTGGCGATCCAGGGCAACATCGCCCAGGAGCTGAAATGG
GACCCGAATCAGGTCCGCGCGCAACTCGACCTCTACCGCGACCTGAGCCTGCCGCAGCAGGACGTCGACCTG
ATCGTCTGGCCGGAAACCGCGGTGCCGATTCTCCAGGACATGGCCAGCGGCTACCTCGGCGCCATGGGCCAG
GTCGCCGACGAGAAGAACGCCGCGCTGATCACCGGGGTCCCGGTGCGCGAACGTCTCGCCGACGGCAAGAGT
CGCTACTTCAACGGCATCACCGTGGTCGGCGAAGGCGCGGGCACCTACCTCAAGCAGAAGCTGGTGCCGTTC
GGCGAGTACGTGCCGCTGCAGGACCTGCTGCGCGGCCTGATCGCCTTCTTCGACCTGCCGATGTCCGACTTC
GCTCGCGGCCCGGCCGACCAGCCGCTGCTCAAGGCCAAGGGCTACGAGATCGCCCCGTACATCTGCTACGAA
GTGGTCTACCCGGAGTTCGCTGCCGCGCTCGCGGCGCAGAGCCAGGTGTTGCTGACAGTGAGCAACGACACC
TGGTTCGGCACTTCCATAGGCCCGTTGCAGCACCTGCAGATGGCGCAGATGCGCGCCCTGGAAAGCGGTCGC
TGGATGATCCGCGCGACCAACAACGGCGTCACCGGCCTGATCGATCCCTATGGCCGAATCGTCCGGCAGATC
CCGCAGTTCCAGCAGGGCATCCTGCGCGGCGAGGTGATTCCCATGCAGGGCCTGACGCCCTATCTGCAATAC
CGCGTCTGGCCGCTGGCCGGGTTGGCCGGCGTGCTGCTGCTATGGGCTCTGCTCGGCCGCCAGTTGCGTCCG
CAGGAGCGACGCCTGTTCGGCTGA
Translation:
MRWISRPGWPGHLLALAAGALTPLALAPFVYWPLAILSIALLYLGLRGLPGKSALWRGWWYGFGAFGAGTSW
IYVSIHDYGAASVPLASFLMLGFTAGVAFFFALPAWLWARCLRRDNAPLGDALAFAALWLALELFRSWFLTG
FPWLYAGYSQLQGPLAGLVPVGGVWLSSFVIALSAALLVNLPRLFPHGASLLLGLVLLLGPWAAGLYLKGHA
WTHSAGEPLRVVAIQGNIAQELKWDPNQVRAQLDLYRDLSLPQQDVDLIVWPETAVPILQDMASGYLGAMGQ
VADEKNAALITGVPVRERLADGKSRYFNGITVVGEGAGTYLKQKLVPFGEYVPLQDLLRGLIAFFDLPMSDF
ARGPADQPLLKAKGYEIAPYICYEVVYPEFAAALAAQSQVLLTVSNDTWFGTSIGPLQHLQMAQMRALESGR
WMIRATNNGVTGLIDPYGRIVRQIPQFQQGILRGEVIPMQGLTPYLQYRVWPLAGLAGVLLLWALLGRQLRP
QERRLFG*
AnnotationID:701GeneID:692
AnnotatorUID: danlee
Modification Date/Time: 2006-01-27 16:04:37
Gene Name:
Confidence Code:2
GeneProduct:apolipoprotein N-acyltransferase
Cell Localization:(4) Inner membrane protein
Synonyms:cutE
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0815
Secondary Functional Category(ies):post-translational modification, degradation
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
emb|CAA41100.1| (X58070) cutE [Escherichia coli]
Length: 554
PctIdentity: 37.36
PctSimilarity: 52.16
Gaps: 85
Score: 845.0






 
Structural Features:
gnl|CDD|10682 COG0815, Lnt, Apolipoprotein N-acyltransferase 
[Cell envelope biogenesis, outer membrane]
Length = 518
Score =  394 bits (1013), Expect = e-110
Identities = 210/520 (40%), Positives = 274/520 (52%), Gaps = 20/520 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18529




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34082




  
Author/Investigator(s):
        Rogers SD, Bhave MR, Mercer JF, Camakaris J, Lee BT.





  
Title:
        Cloning and characterization of cutE, a gene involved in copper transport in Escherichia coli.




  
PubMed:
        1938881


MedLine:
        




    
Source:
J Bacteriol. 1991 Nov;173(21):6742-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=Retrieve&list_uids=92041555&dopt=Citation









           
Homologs By Global Alignment 

           

       



     
Gene ID:692
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1176
                           PA3984_tr
                           translation of PA3984
                           511
                           99.41
                           99.60
                           0
                           2681.0
     

     
     
43759
                           gb|AAG07371.1|AE004816_7
                           (AE004816) apolipoprotein N-acyltransferase [Pseudomonas aeruginosa PAO1]
                           511
                           99.41
                           99.60
                           0
                           2681.0
     

     
     
43760
                           gb|AAC97167.1|
                           (AF038595) apolipoprotein N-acyltransferase [Pseudomonas aeruginosa]
                           511
                           99.41
                           99.60
                           0
                           2681.0
     

     
     
43761
                           gb|AAN70359.1|AE016677_10
                           (AE016792) apolipoprotein N-acyltransferase [Pseudomonas putida KT2440]
                           512
                           70.89
                           80.85
                           8
                           1921.0
     

     
     
43762
                           gb|AAO58237.1|
                           (AE016873) apolipoprotein N-acyltransferase [Pseudomonas syringae pv. tomato str. DC3000]
                           511
                           68.68
                           79.06
                           5
                           1873.0
     

     






      

          
GC ORFID: 43694How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3984Glimmer Score: 

          
Start: 3892886Stop: 3894421

          
Length: 1536


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3984 translation of PA3984Homolog Bit Score 1037.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5730 (ORF: BLASTX 735.0), t_PA3984 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTTGGATTTCTCGTCCCGGCTGGCCCGGACACCTGCTGGCACTCGCCGCAGGCGCGCTCACACCCCTG 
GCCCTGGCGCCCTTCGTCTACTGGCCGCTGGCGATCCTCTCGATCGCCCTGCTCTATCTCGGCTTGCGCGGC 
CTTCCCGGCAAGTCCGCCCTGTGGCGCGGCTGGTGGTACGGTTTCGGCGCGTTCGGCGCCGGCACCAGCTGG 
ATCTACGTCAGTATCCATGACTACGGCGCCGCCTCGGTGCCGCTGGCGAGCTTCCTCATGCTCGGCTTCACC 
GCCGGCGTCGCCTTCTTCTTCGCCCTGCCGGCCTGGCTGTGGGCGCGCTGCCTGCGCCGCGACAACGCGCCG 
CTGGGCGACGCCCTGGCGTTCGCCGCCCTGTGGCTGGCACTGGAGCTGTTCCGCAGTTGGTTCCTTACCGGT 
TTCCCCTGGCTCTACGCCGGCTATAGCCAGTTGCAGGGACCGCTGGCCGGGCTGGTGCCGGTGGGTGGCGTA 
TGGCTGTCCTCCTTCGTCATCGCCCTCAGCGCGGCCCTGCTGGTGAACCTGCCGCGCCTCTTCCCGCACGGT 
GCCAGCCTGCTTCTGGGGCTGGTCCTGCTGCTCGGCCCGTGGGCGGCCGGCCTCTATCTCAAGGGCCACGCC 
TGGACCCATTCGGCCGGCGAACCGCTGAGGGTAGTGGCGATCCAGGGCAACATCGCCCAGGAGCTGAAATGG 
GACCCGAATCAGGTCCGCGCGCAACTCGACCTCTACCGCGACCTGAGCCTGCCGCAGCAGGACGTCGACCTG 
ATCGTCTGGCCGGAAACCGCGGTGCCGATTCTCCAGGACATGGCCAGCGGCTACCTCGGCGCCATGGGCCAG 
GTCGCCGACGAGAAGAACGCCGCGCTGATCACCGGGGTCCCGGTGCGCGAACGTCTCGCCGACGGCAAGAGT 
CGCTACTTCAACGGCATCACCGTGGTCGGCGAAGGCGCGGGCACCTACCTCAAGCAGAAGCTGGTGCCGTTC 
GGCGAGTACGTGCCGCTGCAGGACCTGCTGCGCGGCCTGATCGCCTTCTTCGACCTGCCGATGTCCGACTTC 
GCTCGCGGCCCGGCCGACCAGCCGCTGCTCAAGGCCAAGGGCTACGAGATCGCCCCGTACATCTGCTACGAA 
GTGGTCTACCCGGAGTTCGCTGCCGCGCTCGCGGCGCAGAGCCAGGTGTTGCTGACAGTGAGCAACGACACC 
TGGTTCGGCACTTCCATAGGCCCGTTGCAGCACCTGCAGATGGCGCAGATGCGCGCCCTGGAAAGCGGTCGC 
TGGATGATCCGCGCGACCAACAACGGCGTCACCGGCCTGATCGATCCCTATGGCCGAATCGTCCGGCAGATC 
CCGCAGTTCCAGCAGGGCATCCTGCGCGGCGAGGTGATTCCCATGCAGGGCCTGACGCCCTATCTGCAATAC 
CGCGTCTGGCCGCTGGCCGGGTTGGCCGGCGTGCTGCTGCTATGGGCTCTGCTCGGCCGCCAGTTGCGTCCG 
CAGGAGCGACGCCTGTTCGGCTGA