ViewGene

Locus Name:
GeneID:
Location:

GeneID:691
TrivialName: PA14_58750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_58750
PAO1 Ortholog Locus:PA4526
Sequence Length:1704
Protein Length:567
Start: 5234279
Stop: 5235982
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07914.1|AE004866_8 (AE004866) type 4 fimbrial biogenesis protein PilB [Pseudomonas aeruginosa PAO1]
Identities = 531/567 (93%), Positives = 549/567 (96%), Gaps = 1/567 (0%)
Sequence:
ATGAACGACACAATTCAACTCAGCGGCTTGGCTCGCCAGCTCGTCCTGCATGAACTTCTCGATGAAAAGGCC
GCCCAACAGGCCCAATCGCAGGCCCAGCGCAACAAGTTGTCGCTGGTAACCTATCTGGTACAGAGCAAGCTA
GTGAAAGGGCAGGCCTTGATCGAACTGGCTGCGGATCAATTCGGTATCGCCTACTGCGACCTGAACAGCCTT
GAGCGGGACAGTCTGCCCAAGGATCTAATCAGCGAGAAGCTGGTGCGCCAGCATCGAGTAGTTCCGTTGTGG
CGACGCGGCAACAAGCTGTTCGTCGGCATCTCCGATCCAGCCAACCACCAGGCGATTAACGATGTGCAGTTC
AGCACAGGCCTGACTACTGAAGCCATCCTGGTCGAGGATGACAAGCTCGGCATCATCATCGAGAAACTATTC
GAAAATGCCACTGACAGCCTTGCAGGACTGGACGACGTGGATCTGGAAGGCCTGGATGTCGGCTCCGGTGCG
GGCGCAAGCCAGGATGATGATTCCAGTGCAGAGACAGACGACGCCCCAGTGGTGCGTTTCGTCAACAAAATG
TTGTTGGATGCGATCAGAGGCGGCTCCTCCGACCTGCATTTCGAGCCCTATGAAAAGATTTACCGCGTACGT
TTCCGTACCGATGGCATGCTCCATGAAGTAGCCAAGCCGCCGATCCAGTTGGCCAGCCGTATTTCCGCGCGA
CTCAAGGTGATGGCAGGCCTGGATATCTCCGAACGGCGCAAGCCGCAGGACGGGCGGATCAAGATGCGCGTG
TCGAAGACCAAGTCCATCGACTTCCGCGTCAACACCCTGCCGACCCTGTGGGGCGAGAAGATCGTGATGCGG
ATCCTCGACTCCTCTAGCGCGCAGATGGGCATCGACGCCCTGGGCTACGAGGAGGACCAGAAGGAACTCTAC
CTGGCTGCGCTCAAGCAGCCGCAGGGCATGATCCTGGTCACCGGGCCCACCGGCTCGGGCAAGACGGTCTCC
CTGTACACCGGCCTGAACATCCTCAACACCACCGACATCAACATCTCCACTGCCGAAGACCCGGTGGAGATC
AACCTGGAAGGCATCAACCAGGTCAACGTCAATCCGCGCCAGGGCATGGACTTCTCCCAGGCGCTGCGCGCC
TTCCTGCGCCAGGACCCGGACGTGATCATGGTCGGCGAGATTCGCGACCTGGAGACGGCCGAGATCGCCATC
AAGGCGGCGCAGACCGGGCATATGGTGATGTCCACCCTGCACACCAACAGCGCCGCCGAGACCCTGACCCGC
CTGCTGAACATGGGCGTGCCAGCGTTCAACCTGGCGACCTCGGTGAATCTGATCATCGCCCAGCGCCTTGCG
CGAAAACTCTGCTCGCACTGCAAGAAAGAACACGAGGTGCCGAGGGAAACCCTGCTTCACGAGGGCTTCCCG
GAAGACAAGATCGGCACCTTCAAGCTTTATTCGCCGGTGGGCTGCGACCATTGCAAGAACGGTTACAAGGGC
CGTGTCGGTATTTATGAAGTGGTTAAAAACACCCCGGCCCTGCAGCGGATTATCATGGAGGAAGGCAACTCC
ATCGAGATCGCCGAGCAAGCCCGCAAAGAAGGCTTCAACGATCTGCGCACCTCAGGCCTGCTGAAAGCCATG
CAGGGGATCACCAGCCTGGAGGAAGTCAACCGCGTGACCAAGGACTAA
Translation:
MNDTIQLSGLARQLVLHELLDEKAAQQAQSQAQRNKLSLVTYLVQSKLVKGQALIELAADQFGIAYCDLNSL
ERDSLPKDLISEKLVRQHRVVPLWRRGNKLFVGISDPANHQAINDVQFSTGLTTEAILVEDDKLGIIIEKLF
ENATDSLAGLDDVDLEGLDVGSGAGASQDDDSSAETDDAPVVRFVNKMLLDAIRGGSSDLHFEPYEKIYRVR
FRTDGMLHEVAKPPIQLASRISARLKVMAGLDISERRKPQDGRIKMRVSKTKSIDFRVNTLPTLWGEKIVMR
ILDSSSAQMGIDALGYEEDQKELYLAALKQPQGMILVTGPTGSGKTVSLYTGLNILNTTDINISTAEDPVEI
NLEGINQVNVNPRQGMDFSQALRAFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAAETLTR
LLNMGVPAFNLATSVNLIIAQRLARKLCSHCKKEHEVPRETLLHEGFPEDKIGTFKLYSPVGCDHCKNGYKG
RVGIYEVVKNTPALQRIIMEEGNSIEIAEQARKEGFNDLRTSGLLKAMQGITSLEEVNRVTKD*
AnnotationID:700GeneID:691
AnnotatorUID: diggins
Modification Date/Time: 2005-05-04 15:03:54
Gene Name:pilB
Confidence Code:1
GeneProduct: type 4 fimbrial biogenesis protein PilB
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:pilin biogenesis protein PilB
Functional Category Confidence Code:5
COGs:COG2804,pfam00437,COG2805
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAA10651.1| (AJ132364) PilB protein [Pseudomonas stutzeri]
          Length = 567

 Score =  899 bits (2324), Expect = 0.0
 Identities = 454/567 (80%), Positives = 508/567 (89%)


>gb|AAG18587.1|AF297457_2 (AF297457) pilin biogenesis protein PilB [Pseudomonas fluorescens]
          Length = 566

 Score =  884 bits (2285), Expect = 0.0
 Identities = 440/567 (77%), Positives = 504/567 (88%), Gaps = 1/567 (0%)


>gb|AAC43996.1| (U20255) TapB [Aeromonas hydrophila]
          Length = 568

 Score =  642 bits (1655), Expect = 0.0
 Identities = 320/562 (56%), Positives = 430/562 (76%), Gaps = 6/562 (1%)
Structural Features:
COG2804, PulE, Type II secretory pathway, ATPase PulE /
Tfp pilus assembly pathway, ATPase PilB 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 500 residues,  99.0% aligned
Score =  580 bits (1496), Expect = 3e-166
Identities = 245/502 (48%), Positives = 335/502 (66%), Gaps = 9/502 (1%)

pfam00437, GSPII_E, Type II/IV secretion system protein.
CD-Length = 283 residues,  99.6% aligned
Score =  300 bits (769), Expect = 6e-82
Identities = 137/291 (47%), Positives = 176/291 (60%), Gaps = 21/291 (7%)

COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 353 residues,  83.6% aligned
Score =  172 bits (438), Expect = 2e-43
Identities = 113/349 (32%), Positives = 174/349 (49%), Gaps = 66/349 (18%)
Genomic Context:
Comment:
ReferenceID:1385
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18527
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31571
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:691_cdd.html
URL:
ReferenceID:32973
Author/Investigator(s): Alm RA, Mattick JS.
Title: Genes involved in the biogenesis and function of type-4 fimbriae in Pseudomonas aeruginosa.
PubMed: 9224878
MedLine:
Source:
Gene. 1997 Jun 11;192(1):89-98.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9224878
ReferenceID:32974
Author/Investigator(s): Whitchurch CB, Hobbs M, Livingston SP, Krishnapillai V, Mattick JS.
Title: Characterisation of a Pseudomonas aeruginosa twitching motility gene and evidence for a specialised protein export system widespread in eubacteria.
PubMed: 1676385
MedLine:
Source:
Gene. 1991 May 15;101(1):33-44.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1676385
ReferenceID:32975
Author/Investigator(s): Nunn D, Bergman S, Lory S.
Title: Products of three accessory genes, pilB, pilC, and pilD, are required for biogenesis of Pseudomonas aeruginosa pili.
PubMed: 1971619
MedLine:
Source:
J Bacteriol. 1990 Jun;172(6):2911-9.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=1971619
Homologs By Global Alignment
Gene ID:691

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1172 PA4526_tr translation of PA4526 567 93.65 96.82 1 2685.0
43665 gb|AAG07914.1|AE004866_8 (AE004866) type 4 fimbrial biogenesis protein PilB [Pseudomonas aeruginosa PAO1] 567 93.65 96.82 1 2685.0
43666 gb|AAA25732.1| (M32066) pilin biogenesis protein (pilB) [Pseudomonas aeruginosa] 567 92.59 96.11 1 2652.0
43667 emb|CAA10651.1| (AJ132364) PilB protein [Pseudomonas stutzeri] 567 80.07 89.59 0 2324.0
43669 gb|AAO54460.1| (AE016859) type IV pilus biogenesis protein PilB [Pseudomonas syringae pv. tomato str. DC3000] 568 78.16 87.85 5 2252.0
GC ORFID: 43693How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4526Glimmer Score:
Start: 4497958Stop: 4499661
Length: 1704
Start Codon: ATGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA4526 translation of PA4526Homolog Bit Score 1038.0
Other Homologs: psyr_15may02_Scaffold15_revised_gene2535 (ORF: BLASTX 871.0), t_PA3103 (ORF: BLASTX 345.0), t_PA0686 (ORF: BLASTX 323.0), t_PA4526 (ORF: GLIMMER)
GC ORF Sequence
ATGAACGACACAATTCAACTCAGCGGCTTGGCTCGCCAGCTCGTCCTGCATGAACTTCTCGATGAAAAGGCC
GCCCAACAGGCCCAATCGCAGGCCCAGCGCAACAAGTTGTCGCTGGTAACCTATCTGGTACAGAGCAAGCTA
GTGAAAGGGCAGGCCTTGATCGAACTGGCTGCGGATCAATTCGGTATCGCCTACTGCGACCTGAACAGCCTT
GAGCGGGACAGTCTGCCCAAGGATCTAATCAGCGAGAAGCTGGTGCGCCAGCATCGAGTAGTTCCGTTGTGG
CGACGCGGCAACAAGCTGTTCGTCGGCATCTCCGATCCAGCCAACCACCAGGCGATTAACGATGTGCAGTTC
AGCACAGGCCTGACTACTGAAGCCATCCTGGTCGAGGATGACAAGCTCGGCATCATCATCGAGAAACTATTC
GAAAATGCCACTGACAGCCTTGCAGGACTGGACGACGTGGATCTGGAAGGCCTGGATGTCGGCTCCGGTGCG
GGCGCAAGCCAGGATGATGATTCCAGTGCAGAGACAGACGACGCCCCAGTGGTGCGTTTCGTCAACAAAATG
TTGTTGGATGCGATCAGAGGCGGCTCCTCCGACCTGCATTTCGAGCCCTATGAAAAGATTTACCGCGTACGT
TTCCGTACCGATGGCATGCTCCATGAAGTAGCCAAGCCGCCGATCCAGTTGGCCAGCCGTATTTCCGCGCGA
CTCAAGGTGATGGCAGGCCTGGATATCTCCGAACGGCGCAAGCCGCAGGACGGGCGGATCAAGATGCGCGTG
TCGAAGACCAAGTCCATCGACTTCCGCGTCAACACCCTGCCGACCCTGTGGGGCGAGAAGATCGTGATGCGG
ATCCTCGACTCCTCTAGCGCGCAGATGGGCATCGACGCCCTGGGCTACGAGGAGGACCAGAAGGAACTCTAC
CTGGCTGCGCTCAAGCAGCCGCAGGGCATGATCCTGGTCACCGGGCCCACCGGCTCGGGCAAGACGGTCTCC
CTGTACACCGGCCTGAACATCCTCAACACCACCGACATCAACATCTCCACTGCCGAAGACCCGGTGGAGATC
AACCTGGAAGGCATCAACCAGGTCAACGTCAATCCGCGCCAGGGCATGGACTTCTCCCAGGCGCTGCGCGCC
TTCCTGCGCCAGGACCCGGACGTGATCATGGTCGGCGAGATTCGCGACCTGGAGACGGCCGAGATCGCCATC
AAGGCGGCGCAGACCGGGCATATGGTGATGTCCACCCTGCACACCAACAGCGCCGCCGAGACCCTGACCCGC
CTGCTGAACATGGGCGTGCCAGCGTTCAACCTGGCGACCTCGGTGAATCTGATCATCGCCCAGCGCCTTGCG
CGAAAACTCTGCTCGCACTGCAAGAAAGAACACGAGGTGCCGAGGGAAACCCTGCTTCACGAGGGCTTCCCG
GAAGACAAGATCGGCACCTTCAAGCTTTATTCGCCGGTGGGCTGCGACCATTGCAAGAACGGTTACAAGGGC
CGTGTCGGTATTTATGAAGTGGTTAAAAACACCCCGGCCCTGCAGCGGATTATCATGGAGGAAGGCAACTCC
ATCGAGATCGCCGAGCAAGCCCGCAAAGAAGGCTTCAACGATCTGCGCACCTCAGGCCTGCTGAAAGCCATG
CAGGGGATCACCAGCCTGGAGGAAGTCAACCGCGTGACCAAGGACTAA