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Modification Date/Time: | 2006-04-06 13:01:23 |
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Missense Discrepancy: | FALSE |
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Comments: Homology: gb|AAG07914.1|AE004866_8 (AE004866) type 4 fimbrial biogenesis protein PilB [Pseudomonas aeruginosa PAO1]
Identities = 531/567 (93%), Positives = 549/567 (96%), Gaps = 1/567 (0%)
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Sequence:
ATGAACGACACAATTCAACTCAGCGGCTTGGCTCGCCAGCTCGTCCTGCATGAACTTCTCGATGAAAAGGCC
GCCCAACAGGCCCAATCGCAGGCCCAGCGCAACAAGTTGTCGCTGGTAACCTATCTGGTACAGAGCAAGCTA
GTGAAAGGGCAGGCCTTGATCGAACTGGCTGCGGATCAATTCGGTATCGCCTACTGCGACCTGAACAGCCTT
GAGCGGGACAGTCTGCCCAAGGATCTAATCAGCGAGAAGCTGGTGCGCCAGCATCGAGTAGTTCCGTTGTGG
CGACGCGGCAACAAGCTGTTCGTCGGCATCTCCGATCCAGCCAACCACCAGGCGATTAACGATGTGCAGTTC
AGCACAGGCCTGACTACTGAAGCCATCCTGGTCGAGGATGACAAGCTCGGCATCATCATCGAGAAACTATTC
GAAAATGCCACTGACAGCCTTGCAGGACTGGACGACGTGGATCTGGAAGGCCTGGATGTCGGCTCCGGTGCG
GGCGCAAGCCAGGATGATGATTCCAGTGCAGAGACAGACGACGCCCCAGTGGTGCGTTTCGTCAACAAAATG
TTGTTGGATGCGATCAGAGGCGGCTCCTCCGACCTGCATTTCGAGCCCTATGAAAAGATTTACCGCGTACGT
TTCCGTACCGATGGCATGCTCCATGAAGTAGCCAAGCCGCCGATCCAGTTGGCCAGCCGTATTTCCGCGCGA
CTCAAGGTGATGGCAGGCCTGGATATCTCCGAACGGCGCAAGCCGCAGGACGGGCGGATCAAGATGCGCGTG
TCGAAGACCAAGTCCATCGACTTCCGCGTCAACACCCTGCCGACCCTGTGGGGCGAGAAGATCGTGATGCGG
ATCCTCGACTCCTCTAGCGCGCAGATGGGCATCGACGCCCTGGGCTACGAGGAGGACCAGAAGGAACTCTAC
CTGGCTGCGCTCAAGCAGCCGCAGGGCATGATCCTGGTCACCGGGCCCACCGGCTCGGGCAAGACGGTCTCC
CTGTACACCGGCCTGAACATCCTCAACACCACCGACATCAACATCTCCACTGCCGAAGACCCGGTGGAGATC
AACCTGGAAGGCATCAACCAGGTCAACGTCAATCCGCGCCAGGGCATGGACTTCTCCCAGGCGCTGCGCGCC
TTCCTGCGCCAGGACCCGGACGTGATCATGGTCGGCGAGATTCGCGACCTGGAGACGGCCGAGATCGCCATC
AAGGCGGCGCAGACCGGGCATATGGTGATGTCCACCCTGCACACCAACAGCGCCGCCGAGACCCTGACCCGC
CTGCTGAACATGGGCGTGCCAGCGTTCAACCTGGCGACCTCGGTGAATCTGATCATCGCCCAGCGCCTTGCG
CGAAAACTCTGCTCGCACTGCAAGAAAGAACACGAGGTGCCGAGGGAAACCCTGCTTCACGAGGGCTTCCCG
GAAGACAAGATCGGCACCTTCAAGCTTTATTCGCCGGTGGGCTGCGACCATTGCAAGAACGGTTACAAGGGC
CGTGTCGGTATTTATGAAGTGGTTAAAAACACCCCGGCCCTGCAGCGGATTATCATGGAGGAAGGCAACTCC
ATCGAGATCGCCGAGCAAGCCCGCAAAGAAGGCTTCAACGATCTGCGCACCTCAGGCCTGCTGAAAGCCATG
CAGGGGATCACCAGCCTGGAGGAAGTCAACCGCGTGACCAAGGACTAA |
Translation:
MNDTIQLSGLARQLVLHELLDEKAAQQAQSQAQRNKLSLVTYLVQSKLVKGQALIELAADQFGIAYCDLNSL
ERDSLPKDLISEKLVRQHRVVPLWRRGNKLFVGISDPANHQAINDVQFSTGLTTEAILVEDDKLGIIIEKLF
ENATDSLAGLDDVDLEGLDVGSGAGASQDDDSSAETDDAPVVRFVNKMLLDAIRGGSSDLHFEPYEKIYRVR
FRTDGMLHEVAKPPIQLASRISARLKVMAGLDISERRKPQDGRIKMRVSKTKSIDFRVNTLPTLWGEKIVMR
ILDSSSAQMGIDALGYEEDQKELYLAALKQPQGMILVTGPTGSGKTVSLYTGLNILNTTDINISTAEDPVEI
NLEGINQVNVNPRQGMDFSQALRAFLRQDPDVIMVGEIRDLETAEIAIKAAQTGHMVMSTLHTNSAAETLTR
LLNMGVPAFNLATSVNLIIAQRLARKLCSHCKKEHEVPRETLLHEGFPEDKIGTFKLYSPVGCDHCKNGYKG
RVGIYEVVKNTPALQRIIMEEGNSIEIAEQARKEGFNDLRTSGLLKAMQGITSLEEVNRVTKD* |
AnnotationID:700 | GeneID:691 |
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Modification Date/Time: |
2005-05-04 15:03:54 |
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GeneProduct: | type 4 fimbrial biogenesis protein PilB |
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Cell Localization Confidence Code: | 5 |
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Functional Category: | (16) Motility & Attachment |
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Alternate Gene Product Name: | pilin biogenesis protein PilB |
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Functional Category Confidence Code: | 5 |
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Secondary Functional Category(ies): | |
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Homology: | >emb|CAA10651.1| (AJ132364) PilB protein [Pseudomonas stutzeri]
Length = 567
Score = 899 bits (2324), Expect = 0.0
Identities = 454/567 (80%), Positives = 508/567 (89%)
>gb|AAG18587.1|AF297457_2 (AF297457) pilin biogenesis protein PilB [Pseudomonas fluorescens]
Length = 566
Score = 884 bits (2285), Expect = 0.0
Identities = 440/567 (77%), Positives = 504/567 (88%), Gaps = 1/567 (0%)
>gb|AAC43996.1| (U20255) TapB [Aeromonas hydrophila]
Length = 568
Score = 642 bits (1655), Expect = 0.0
Identities = 320/562 (56%), Positives = 430/562 (76%), Gaps = 6/562 (1%)
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Structural Features: | COG2804, PulE, Type II secretory pathway, ATPase PulE /
Tfp pilus assembly pathway, ATPase PilB
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 500 residues, 99.0% aligned
Score = 580 bits (1496), Expect = 3e-166
Identities = 245/502 (48%), Positives = 335/502 (66%), Gaps = 9/502 (1%)
pfam00437, GSPII_E, Type II/IV secretion system protein.
CD-Length = 283 residues, 99.6% aligned
Score = 300 bits (769), Expect = 6e-82
Identities = 137/291 (47%), Positives = 176/291 (60%), Gaps = 21/291 (7%)
COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 353 residues, 83.6% aligned
Score = 172 bits (438), Expect = 2e-43
Identities = 113/349 (32%), Positives = 174/349 (49%), Gaps = 66/349 (18%) |
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