ViewGene
Locus Name:
GeneID:
Location:

GeneID:6904
TrivialName: PA14_69660
AnnotatorUID: danlee
Modification Date/Time:2006-06-04 14:02:41
LocusName:PA14_69660
PAO1 Ortholog Locus:PA5276
Sequence Length:141
Protein Length:46
Start: 6214536
Stop: 6214676
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08661.1|AE004940_5 (AE004940) Lipopeptide LppL precursor [Pseudomonas aeruginosa PAO1]
Identities = 46/46 (100%), Positives = 46/46 (100%)
Sequence:
ATGAAGCGGCTGTTCCTGTCCTTCGTCGCGCTCGCCCTCCTCGCCGGCTCCATCGCCGCCTGCGGCCAGAAA
GGCCCGCTGTACCTGCCGGACGACGAAAAAGCCAAGAAAGAACACAGCAAAGACCGCTACGGTTTCTGA
Translation:
MKRLFLSFVALALLAGSIAACGQKGPLYLPDDEKAKKEHSKDRYGF*
AnnotationID:6905GeneID:6904
AnnotatorUID: danlee
Modification Date/Time: 2006-06-04 14:02:04
Gene Name:lppL
Confidence Code:1
GeneProduct:Lipopeptide LppL precursor
Cell Localization:(6) Outer membrane protein
Synonyms:
Cell Localization Confidence Code:1
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5567
Secondary Functional Category(ies):cell motility and secretion
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
PA5276 [gene=lppL] [prot=lipopeptide LppL precursor] [comment=PA5276]
          Length = 46

 Score = 95.9 bits (237), Expect = 6e-022
 Identities = 46/46 (100%), Positives = 46/46 (100%)

>gb|AAO53772.1| (AE016856) lipoprotein LppL [Pseudomonas syringae pv. tomato str.
          DC3000]
          Length = 48

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 24/43 (55%), Positives = 30/43 (69%)

>emb|CAA72942.1| (Y12268) LppL protein [Pseudomonas fluorescens]
          Length = 57

 Score = 52.4 bits (124), Expect = 6e-07
 Identities = 24/41 (58%), Positives = 29/41 (70%)

>gb|AAN70791.1|AE016723_3 (AE016793) lipoprotein, Lppl family [Pseudomonas putida KT2440]
          Length = 72

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 23/44 (52%), Positives = 30/44 (68%)











 
Structural Features:
COG5567, COG5567, Predicted small periplasmic lipoprotein 
[Cell motility and secretion]
CD-Length = 58 residues,  86.2% aligned
Score = 54.7 bits (131), Expect = 2e-09
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)








   
Genomic Context:






   
Comment:


















    ReferenceID:13505




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30887




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34767




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6904_cdd.html


    		




 
URL:









      

          
GC ORFID: 49906How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5478223Stop: 5478363

          
Length: 141


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGAAGCGGCTGTTCCTGTCCTTCGTCGCGCTCGCCCTCCTCGCCGGCTCCATCGCCGCCTGCGGCCAGAAA 
GGCCCGCTGTACCTGCCGGACGACGAAAAAGCCAAGAAAGAACACAGCAAAGACCGCTACGGTTTCTGA