ViewGene

Locus Name:
GeneID:
Location:

GeneID:6903
TrivialName: PA14_69540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69540
PAO1 Ortholog Locus:
Sequence Length:882
Protein Length:293
Start: 6203863
Stop: 6202982
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAF95933.1| (AE004345) hypothetical protein [Vibrio cholerae]
Identities = 82/274 (29%), Positives = 146/274 (53%), Gaps = 11/274 (4%)
Sequence:
ATGCGCACTGAACCGATGCTGCCCGCCTTGCCCGCCGACCTGCCCTGGACGCTGAATGCCTACCTGCTGCTC
GATGGCGTCAGCGTCATGGAACTGCCGCGCAAGCTCTACCAATGGAGCGATACTCCGACCTTCGAGCCGCTG
TACCGCGACAGCCGCTGGCAGGAACTGCTGGACCTGTCGCCCTGCCTGGTCGCCCTCGACGGCCGCCAGGAC
CCTATCCTGCAGGCGTTCCTCGACAACGCCGCACAGGAATGGGGCTACCTGCTCTTCGCCCGCGTCAGCTTG
CCGATCCTGTCGCAGCACCTGCGGGACCTTCTGTGCGTCCAATCTCCCCATGGCGAGCCGGTGCTGCTGCGC
CTGGCCGACCCGGCAGTGATGCATAGCCTGCTGGAACATGAACGCATGGAACTGTTCGGTCCGATCGAGCAG
GCATGTGCTCCAGATGCCCTGGAAATCCGCTGGTGGCAACACCGGCGAAGCGGTTCGGCGATCGCTCGCGAC
CGCACGCAGCCCTACCGTCTGAGCGAGGCCGAATTCGATGCACTTGGCGAAGTCAGCTTCCGCCAGACCCTC
ATGGACATGGATCGCCACATGAATCTGTATTTCCCCGGCTATCGCCCGGCCCTGTGCGGCCGAGAGCGCTTC
CAGCACCTGCGTATGCTGGCCGAGCAGGCCTACCGTCGTGGGATGTGCTCGGCGCGGGACATCCTGCTCTAC
GCCAATATCTTCGGCTACCTGGGCGAGGATGCGCTGGACGCGCATGCGGACATCGCCGTGCTGCTCGATGGT
CCCTCCAGCCAATCCCCGGCGCAGCGGGTGGCCGCTGCGGCCGAGCTGGCGGAGCGTCGCGCCGCCGAGACA
GAAAGGATGCATTCATGA
Translation:
MRTEPMLPALPADLPWTLNAYLLLDGVSVMELPRKLYQWSDTPTFEPLYRDSRWQELLDLSPCLVALDGRQD
PILQAFLDNAAQEWGYLLFARVSLPILSQHLRDLLCVQSPHGEPVLLRLADPAVMHSLLEHERMELFGPIEQ
ACAPDALEIRWWQHRRSGSAIARDRTQPYRLSEAEFDALGEVSFRQTLMDMDRHMNLYFPGYRPALCGRERF
QHLRMLAEQAYRRGMCSARDILLYANIFGYLGEDALDAHADIAVLLDGPSSQSPAQRVAAAAELAERRAAET
ERMHS*
AnnotationID:6904GeneID:6903
AnnotatorUID: danlee
Modification Date/Time: 2005-10-08 14:02:08
Gene Name:
Confidence Code:4
GeneProduct:Hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|42768698|gb|AAS45564.1|  hypothetical protein [Aeromonas hydrophila]
     Length=285
     Score =  152 bits (383),  Expect = 2e-35
     Identities = 100/270 (37%), Positives = 147/270 (54%), Gaps = 16/270 (5%)
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:13503
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:30885
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
GC ORFID: 49905How Found: Glimmer
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: Glimmer Score:
Start: 5467550Stop: 5466669
Length: 882
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: Homolog Bit Score
Other Homologs:
GC ORF Sequence
ATGCGCACTGAACCGATGCTGCCCGCCTTGCCCGCCGACCTGCCCTGGACGCTGAATGCCTACCTGCTGCTC
GATGGCGTCAGCGTCATGGAACTGCCGCGCAAGCTCTACCAATGGAGCGATACTCCGACCTTCGAGCCGCTG
TACCGCGACAGCCGCTGGCAGGAACTGCTGGACCTGTCGCCCTGCCTGGTCGCCCTCGACGGCCGCCAGGAC
CCTATCCTGCAGGCGTTCCTCGACAACGCCGCACAGGAATGGGGCTACCTGCTCTTCGCCCGCGTCAGCTTG
CCGATCCTGTCGCAGCACCTGCGGGACCTTCTGTGCGTCCAATCTCCCCATGGCGAGCCGGTGCTGCTGCGC
CTGGCCGACCCGGCAGTGATGCATAGCCTGCTGGAACATGAACGCATGGAACTGTTCGGTCCGATCGAGCAG
GCATGTGCTCCAGATGCCCTGGAAATCCGCTGGTGGCAACACCGGCGAAGCGGTTCGGCGATCGCTCGCGAC
CGCACGCAGCCCTACCGTCTGAGCGAGGCCGAATTCGATGCACTTGGCGAAGTCAGCTTCCGCCAGACCCTC
ATGGACATGGATCGCCACATGAATCTGTATTTCCCCGGCTATCGCCCGGCCCTGTGCGGCCGAGAGCGCTTC
CAGCACCTGCGTATGCTGGCCGAGCAGGCCTACCGTCGTGGGATGTGCTCGGCGCGGGACATCCTGCTCTAC
GCCAATATCTTCGGCTACCTGGGCGAGGATGCGCTGGACGCGCATGCGGACATCGCCGTGCTGCTCGATGGT
CCCTCCAGCCAATCCCCGGCGCAGCGGGTGGCCGCTGCGGCCGAGCTGGCGGAGCGTCGCGCCGCCGAGACA
GAAAGGATGCATTCATGA