ViewGene
Locus Name:
GeneID:
Location:

GeneID:690
TrivialName: PA14_41160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41160
PAO1 Ortholog Locus:PA1807
Sequence Length:1611
Protein Length:536
Start: 3671022
Stop: 3672632
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05196.1|AE004607_2 (AE004607) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 535/536 (99%), Positives = 535/536 (99%)
Sequence:
ATGAGCGAGAACATTCTGGAAATCCGCGACCTCGCCGTCGAATTCCTCTCCGGCGAGCAACGCCAGCGGGTG
GTCGAAGGCGTCAGCTTCGACATCCGCCAGGGCGAGACCCTGGCCCTGGTCGGCGAAAGCGGCTCGGGCAAG
TCGGTGACCGCCCACTCGATCCTGCGCCTGCTGCCCTACTCCGTCGCCAGCCACCCAGCAGGCAGCATCCAC
TACCAGGGCGAGGATCTGCTCAAGCTCCCGGAACGGCGCCTGCGCGGGATCCGCGGCAACCGCATCGCCATG
GTCTTCCAGGAACCCATGACCTCGCTCAATCCGCTGCATACCATCGAGAAGCAGCTCGCCGAGGTCCTCGCC
CTGCACAAGGGCCTGGGTGGCGCCAAGGCCAGCGCGAGAATTCTCGAACTGCTCGAGCTGGTCGGCATCCCC
GAGCCAGCCAAGCGCCTGAAAGCCTATCCACACGAACTCTCCGGCGGCCAGCGGCAGCGGGTGATGATCGCC
ATGGCCCTGGCCTGCGAGCCGCAACTGCTGATCGCCGACGAACCGACCACCGCGCTCGACGTCACCGTCCAG
TTGAAGATCCTCGATCTGCTCAAGGACCTGCAGGCACGCCTGGGCATGTCCCTGCTGCTGATCACCCACGAC
CTCAACCTGGTCCGGCGCATCGCCCACCGCGTCTGCGTCATGCAACAAGGGCGGATCGTCGAGCAGGCTTCC
TGCCAGGAACTCTTCGCAGCCCCGCGACACCCCTATACCCGCGAGCTGCTCAACGCCGAGCCCAGCGGTGCG
CCGGCAGGCAACCCGCCCGGTGAAACCCTGTTGGCGGTGGACGACCTGCGGGTCTGGTTCCCGATCCGCAAA
GGCGTGTTCCGCCGCACCGTGGACCACGTCAAGGCGGTCGACGGGGTCAATTTCGAACTACCCCGCGGGCAG
ACGCTGGGCATCGTTGGCGAAAGCGGCTCGGGCAAGTCGACCCTTGGCCTGGCAATCCTGCGGCTGCTGGAA
AGCCAGGGCGGCATCCGCTTCGAAGGCACCCGGCTGGACGGTCTCGCGCAACATGACGTGCGCCCGCTGCGC
CGCGAGATGCAGGTGGTGTTCCAGGACCCGTATGGCAGCCTCAGCCCACGCATGTGTGTCGGCGAGATCGTC
GGCGAAGGCCTGCGCATCCATAGGATCGGCAGCGAGGCCGAACAGGAGCAGGCGATCATCGACGCGCTGGTG
GAGGTCGGGCTCGATCCGCAGACCCGCTACCGTTACCCCCACGAATTCTCCGGCGGCCAGCGCCAGCGCATC
GCCATCGCCCGGGCGCTGGTGCTGAAACCGGCGCTGATCCTGCTCGACGAACCGACCTCGGCGCTCGACCGC
ACCGTGCAGCGCCAGGTCGTGGAATTGCTGCGGCAACTGCAGGGCAAGTACAACCTCACCTACCTGTTCATC
AGCCACGACCTGGCGGTGGTCAAGGCGCTCAGCCACCAGTTGATGGTGGTTCGACATGGCAAGGTGGTGGAA
CAGGGCAGCGCCGAAGCGGTTTTCGCCTCGCCGCAACATCCCTATACGCAGCAATTGCTGGAGGCCGCCTTC
ATGGCCCCGGCAAGCGCGGAAAACTGA
Translation:
MSENILEIRDLAVEFLSGEQRQRVVEGVSFDIRQGETLALVGESGSGKSVTAHSILRLLPYSVASHPAGSIH
YQGEDLLKLPERRLRGIRGNRIAMVFQEPMTSLNPLHTIEKQLAEVLALHKGLGGAKASARILELLELVGIP
EPAKRLKAYPHELSGGQRQRVMIAMALACEPQLLIADEPTTALDVTVQLKILDLLKDLQARLGMSLLLITHD
LNLVRRIAHRVCVMQQGRIVEQASCQELFAAPRHPYTRELLNAEPSGAPAGNPPGETLLAVDDLRVWFPIRK
GVFRRTVDHVKAVDGVNFELPRGQTLGIVGESGSGKSTLGLAILRLLESQGGIRFEGTRLDGLAQHDVRPLR
REMQVVFQDPYGSLSPRMCVGEIVGEGLRIHRIGSEAEQEQAIIDALVEVGLDPQTRYRYPHEFSGGQRQRI
AIARALVLKPALILLDEPTSALDRTVQRQVVELLRQLQGKYNLTYLFISHDLAVVKALSHQLMVVRHGKVVE
QGSAEAVFASPQHPYTQQLLEAAFMAPASAEN*
AnnotationID:699GeneID:690
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 18:06:47
Gene Name:
Confidence Code:3
GeneProduct:putative ATP-binding component of ABC transporter
Cell Localization:()
Synonyms:PA1807
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4172,COG1123,COG0444
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57189.1| (AE016869) ABC transporter, ATP-binding protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 536

 Score =  846 bits (2186), Expect = 0.0
 Identities = 424/534 (79%), Positives = 485/534 (90%)

>gb|AAN69732.1|AE016609_6 (AE016789) peptide ABC transporter, ATP-binding protein
           [Pseudomonas putida KT2440]
          Length = 534

 Score =  838 bits (2166), Expect = 0.0
 Identities = 423/527 (80%), Positives = 477/527 (90%)

>gb|AAG57318.1|AE005450_8 (AE005450) putative ATP-binding component of a transport system
           [Escherichia coli O157:H7 EDL933]
          Length = 529

 Score =  607 bits (1564), Expect = e-173
 Identities = 318/526 (60%), Positives = 397/526 (75%), Gaps = 2/526 (0%)






 
Structural Features:
COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component
CD-Length = 534 residues,  99.8% aligned
Score =  842 bits (2176), Expect = 0.0
Identities = 374/533 (70%), Positives = 434/533 (81%), Gaps = 2/533 (0%)

COG1123, ATPase components of various ABC-type transport systems, 
contain duplicated ATPase
CD-Length = 539 residues,  98.7% aligned
Score =  643 bits (1660), Expect = 0.0
Identities = 287/535 (53%), Positives = 364/535 (68%), Gaps = 12/535 (2%)

COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, 
ATPase component 
[Amino acid transport and metabolism / Inorganic ion transport and metabolism]
CD-Length = 316 residues,  82.0% aligned
Score =  377 bits (969), Expect = 2e-105
Identities = 155/259 (59%), Positives = 192/259 (74%), Gaps = 1/259 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1383




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18525




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37079




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:690_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:690
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1167
                           PA1807_tr
                           translation of PA1807
                           536
                           99.81
                           99.81
                           0
                           2684.0
     

     
     
42823
                           gb|AAG05196.1|AE004607_2
                           (AE004607) probable ATP-binding component of ABC transporter [Pseudomonas aeruginosa PAO1]
                           536
                           99.81
                           99.81
                           0
                           2684.0
     

     
     
42825
                           gb|AAN69732.1|AE016609_6
                           (AE016789) peptide ABC transporter, ATP-binding protein [Pseudomonas putida KT2440]
                           537
                           79.32
                           89.19
                           4
                           2165.0
     

     
     
42824
                           gb|AAO57189.1|
                           (AE016869) ABC transporter, ATP-binding protein [Pseudomonas syringae pv. tomato str. DC3000]
                           537
                           78.95
                           90.31
                           2
                           2184.0
     

     
     
42826
                           gb|AAO56522.1|
                           (AE016866) peptide ABC transporter, ATP-binding protein, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           536
                           67.35
                           80.41
                           11
                           1799.0
     

     






      

          
GC ORFID: 43692How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1807Glimmer Score: 

          
Start: 1282887Stop: 1281277

          
Length: 1611


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1807 translation of PA1807Homolog Bit Score 1038.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene638 (ORF: BLASTX 842.0), psyr_15may02_Scaffold5_revised_gene6046 (ORF: BLASTX 704.0), psyr_15may02_Scaffold2_revised_gene3083 (ORF: BLASTX 693.0), t_PA2061 (ORF: BLASTX 606.0), psyr_15may02_Scaffold7_revised_gene7191 (ORF: BLASTX 411.0), t_PA3376 (ORF: BLASTX 145.0), t_PA1807 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGAGAACATTCTGGAAATCCGCGACCTCGCCGTCGAATTCCTCTCCGGCGAGCAACGCCAGCGGGTG 
GTCGAAGGCGTCAGCTTCGACATCCGCCAGGGCGAGACCCTGGCCCTGGTCGGCGAAAGCGGCTCGGGCAAG 
TCGGTGACCGCCCACTCGATCCTGCGCCTGCTGCCCTACTCCGTCGCCAGCCACCCAGCAGGCAGCATCCAC 
TACCAGGGCGAGGATCTGCTCAAGCTCCCGGAACGGCGCCTGCGCGGGATCCGCGGCAACCGCATCGCCATG 
GTCTTCCAGGAACCCATGACCTCGCTCAATCCGCTGCATACCATCGAGAAGCAGCTCGCCGAGGTCCTCGCC 
CTGCACAAGGGCCTGGGTGGCGCCAAGGCCAGCGCGAGAATTCTCGAACTGCTCGAGCTGGTCGGCATCCCC 
GAGCCAGCCAAGCGCCTGAAAGCCTATCCACACGAACTCTCCGGCGGCCAGCGGCAGCGGGTGATGATCGCC 
ATGGCCCTGGCCTGCGAGCCGCAACTGCTGATCGCCGACGAACCGACCACCGCGCTCGACGTCACCGTCCAG 
TTGAAGATCCTCGATCTGCTCAAGGACCTGCAGGCACGCCTGGGCATGTCCCTGCTGCTGATCACCCACGAC 
CTCAACCTGGTCCGGCGCATCGCCCACCGCGTCTGCGTCATGCAACAAGGGCGGATCGTCGAGCAGGCTTCC 
TGCCAGGAACTCTTCGCAGCCCCGCGACACCCCTATACCCGCGAGCTGCTCAACGCCGAGCCCAGCGGTGCG 
CCGGCAGGCAACCCGCCCGGTGAAACCCTGTTGGCGGTGGACGACCTGCGGGTCTGGTTCCCGATCCGCAAA 
GGCGTGTTCCGCCGCACCGTGGACCACGTCAAGGCGGTCGACGGGGTCAATTTCGAACTACCCCGCGGGCAG 
ACGCTGGGCATCGTTGGCGAAAGCGGCTCGGGCAAGTCGACCCTTGGCCTGGCAATCCTGCGGCTGCTGGAA 
AGCCAGGGCGGCATCCGCTTCGAAGGCACCCGGCTGGACGGTCTCGCGCAACATGACGTGCGCCCGCTGCGC 
CGCGAGATGCAGGTGGTGTTCCAGGACCCGTATGGCAGCCTCAGCCCACGCATGTGTGTCGGCGAGATCGTC 
GGCGAAGGCCTGCGCATCCATAGGATCGGCAGCGAGGCCGAACAGGAGCAGGCGATCATCGACGCGCTGGTG 
GAGGTCGGGCTCGATCCGCAGACCCGCTACCGTTACCCCCACGAATTCTCCGGCGGCCAGCGCCAGCGCATC 
GCCATCGCCCGGGCGCTGGTGCTGAAACCGGCGCTGATCCTGCTCGACGAACCGACCTCGGCGCTCGACCGC 
ACCGTGCAGCGCCAGGTCGTGGAATTGCTGCGGCAACTGCAGGGCAAGTACAACCTCACCTACCTGTTCATC 
AGCCACGACCTGGCGGTGGTCAAGGCGCTCAGCCACCAGTTGATGGTGGTTCGACATGGCAAGGTGGTGGAA 
CAGGGCAGCGCCGAAGCGGTTTTCGCCTCGCCGCAACATCCCTATACGCAGCAATTGCTGGAGGCCGCCTTC 
ATGGCCCCGGCAAGCGCGGAAAACTGA