ViewGene
Locus Name:
GeneID:
Location:

GeneID:688
TrivialName: PA14_37680
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37680
PAO1 Ortholog Locus:PA2075
Sequence Length:1668
Protein Length:555
Start: 3354806
Stop: 3356473
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05463.1|AE004635_1 (AE004635) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 540/555 (97%), Positives = 544/555 (98%), Gaps = 2/555 (0%)
Sequence:
ATGCTTCTTCGAACCATCAGTGTGGAAACTGCCGAGCAGACGGAACTGAATGCGGCCTTGTTGTGTGGTTTC
GCCATTCCCGCCAGCGACCGCAACTTCATCGCCTACAGCCTCAACGAACAGGTCGACGAAAACGACTCGCGC
GTCTACATCGCCTCCCTGTTCAAGACCGACGACGGCTTCCGCCTGGGCCGCCTCGACACCGACGAGGCCTGC
GAGGCGGCCATCCAGGTGTTCCGCCAGCTGGTCCGCGAAGCCACCACCGGCAACCGCCGGACCAGCGACCTG
GCCTACCACCTCATCGACCTGCAGGACGCGGCCATCGCCCCCTCGCGCCGGGAAGAACACCGCTCCCTGGTG
CTCGAACGCGAGTGGGTGATGAAGCTCGTCACCTTCGAGTCCCCCCATGGCTACGGCCCCGCCCTGGATGGC
GAGGAACCCTGCGCGGACGTCCCGCCGCTCGTCCATGAGGCCCTTTTCGAAGACGCCGCTCCCGATGTCTTC
GCCGCGGACGATGCGGACGAGGCCTCGGACGGGCCGGCGGAGCCCATCGACGAGCCCGAGGCGGCGGAAGAC
GAAACCGTCACCGAGGCCGGCTGCGTCGAGCCCGAGCCGCGGCCGGAGGCGGAAACGGCAGCGCCCGAGGGT
GGGGCGCCAGCCGAGTTCGCGACGAAAGCGGAGCAGTCCGCCAAGGTAGCGGATGCCGAGGCCATCGGCGCC
TTCGTCGACAACGCCAGTCATCTTCGCGAGGAGCTTGCCGACCTGGCGCAGCTGCTCCACCCCGCGCTGCAC
GCCGCCGACGCCACGGGCAGCGCCAACCTTCCGTCTCCAGACGCCGCCGAGGAATCCTCCATGCCCCCGAGC
CCCTCCCCCCTCGCCGCTTCCGCACCCGCGCCGGAACCGGTATCGGCCAGGGTCCCCAGCCTGTCGCTGCGC
CTCCGGGTGCCGCCCGCACGCCTGGCCGGCGCCGAGGGCGAGGCCGACGTCAGAGAGGCGCCCACCCAGGCC
GCCGCCGTCATTCACCAACCCGAGGATGAAGCCCACGTGGATACGGATACCGCGCTCGATATCGGCAACGAT
ACCGAGCATCTGCTACAGGACGTGCAGGGCACCCTGGCCGACCTCGCCGGCATGGCCCAGCAACTGAGCCAG
CAGAAGCAGGAAGCGCTCAAGCAGCAGGAGTCGCTGGAGTCGCTCCAGACGCAATTGCACGAGAAGGAGCGG
CAATTGCAGGAAAAGGAAAAGCAGCTCCGCCAGTGGCACAAGCGCCTGCAGGACGACCGCCAGGCGCTGGAG
CGGGAAACTGAGCAGAGCAACCGTCTCCTCGCCGAGCGCAGCGCGGCCCTGCAACAACTCGCGGAAAGCGTC
GAAGCCCGCGAGCGCAGCAGCGCGCGGCGAGCCGAAGTACTGCAGATCGAACAGGAACGCCTCGAAGAGTTG
CGCAGCCAGCAGAACCTGCGCCAGGCCGAACTGGAAAAGCGCGAAGCCAGCGTCCAGCAGCGCAGCCTGGAA
CTCGGCGAGCGCTTCAAGAAGCTGGAAAGCGCCCGCGAGAAGCTGGCGCAGATCGTCAAGGGTTTCAACGAG
ACCGTGCAGTTCAATACCGCTCTGCACGCCATCAGTCATACCGGGTTGAAACGCCAGGAAGAGAGCACAGCC
GAACTGGAATAA
Translation:
MLLRTISVETAEQTELNAALLCGFAIPASDRNFIAYSLNEQVDENDSRVYIASLFKTDDGFRLGRLDTDEAC
EAAIQVFRQLVREATTGNRRTSDLAYHLIDLQDAAIAPSRREEHRSLVLEREWVMKLVTFESPHGYGPALDG
EEPCADVPPLVHEALFEDAAPDVFAADDADEASDGPAEPIDEPEAAEDETVTEAGCVEPEPRPEAETAAPEG
GAPAEFATKAEQSAKVADAEAIGAFVDNASHLREELADLAQLLHPALHAADATGSANLPSPDAAEESSMPPS
PSPLAASAPAPEPVSARVPSLSLRLRVPPARLAGAEGEADVREAPTQAAAVIHQPEDEAHVDTDTALDIGND
TEHLLQDVQGTLADLAGMAQQLSQQKQEALKQQESLESLQTQLHEKERQLQEKEKQLRQWHKRLQDDRQALE
RETEQSNRLLAERSAALQQLAESVEARERSSARRAEVLQIEQERLEELRSQQNLRQAELEKREASVQQRSLE
LGERFKKLESAREKLAQIVKGFNETVQFNTALHAISHTGLKRQEESTAELE*
AnnotationID:697GeneID:688
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 06:06:28
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2075
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:1379




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18521




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32629




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:688_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:688
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1165
                           PA2075_tr
                           translation of PA2075
                           555
                           97.29
                           98.01
                           2
                           2689.0
     

     
     
42762
                           gb|AAG05463.1|AE004635_1
                           (AE004635) hypothetical protein PA2075 [Pseudomonas aeruginosa PAO1]
                           555
                           97.29
                           98.01
                           2
                           2689.0
     

     






      

          
GC ORFID: 43690How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2075Glimmer Score: 

          
Start: 1599108Stop: 1597441

          
Length: 1668


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2075 translation of PA2075Homolog Bit Score 1039.0

          
Other Homologs:  t_PA2075 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTTCTTCGAACCATCAGTGTGGAAACTGCCGAGCAGACGGAACTGAATGCGGCCTTGTTGTGTGGTTTC 
GCCATTCCCGCCAGCGACCGCAACTTCATCGCCTACAGCCTCAACGAACAGGTCGACGAAAACGACTCGCGC 
GTCTACATCGCCTCCCTGTTCAAGACCGACGACGGCTTCCGCCTGGGCCGCCTCGACACCGACGAGGCCTGC 
GAGGCGGCCATCCAGGTGTTCCGCCAGCTGGTCCGCGAAGCCACCACCGGCAACCGCCGGACCAGCGACCTG 
GCCTACCACCTCATCGACCTGCAGGACGCGGCCATCGCCCCCTCGCGCCGGGAAGAACACCGCTCCCTGGTG 
CTCGAACGCGAGTGGGTGATGAAGCTCGTCACCTTCGAGTCCCCCCATGGCTACGGCCCCGCCCTGGATGGC 
GAGGAACCCTGCGCGGACGTCCCGCCGCTCGTCCATGAGGCCCTTTTCGAAGACGCCGCTCCCGATGTCTTC 
GCCGCGGACGATGCGGACGAGGCCTCGGACGGGCCGGCGGAGCCCATCGACGAGCCCGAGGCGGCGGAAGAC 
GAAACCGTCACCGAGGCCGGCTGCGTCGAGCCCGAGCCGCGGCCGGAGGCGGAAACGGCAGCGCCCGAGGGT 
GGGGCGCCAGCCGAGTTCGCGACGAAAGCGGAGCAGTCCGCCAAGGTAGCGGATGCCGAGGCCATCGGCGCC 
TTCGTCGACAACGCCAGTCATCTTCGCGAGGAGCTTGCCGACCTGGCGCAGCTGCTCCACCCCGCGCTGCAC 
GCCGCCGACGCCACGGGCAGCGCCAACCTTCCGTCTCCAGACGCCGCCGAGGAATCCTCCATGCCCCCGAGC 
CCCTCCCCCCTCGCCGCTTCCGCACCCGCGCCGGAACCGGTATCGGCCAGGGTCCCCAGCCTGTCGCTGCGC 
CTCCGGGTGCCGCCCGCACGCCTGGCCGGCGCCGAGGGCGAGGCCGACGTCAGAGAGGCGCCCACCCAGGCC 
GCCGCCGTCATTCACCAACCCGAGGATGAAGCCCACGTGGATACGGATACCGCGCTCGATATCGGCAACGAT 
ACCGAGCATCTGCTACAGGACGTGCAGGGCACCCTGGCCGACCTCGCCGGCATGGCCCAGCAACTGAGCCAG 
CAGAAGCAGGAAGCGCTCAAGCAGCAGGAGTCGCTGGAGTCGCTCCAGACGCAATTGCACGAGAAGGAGCGG 
CAATTGCAGGAAAAGGAAAAGCAGCTCCGCCAGTGGCACAAGCGCCTGCAGGACGACCGCCAGGCGCTGGAG 
CGGGAAACTGAGCAGAGCAACCGTCTCCTCGCCGAGCGCAGCGCGGCCCTGCAACAACTCGCGGAAAGCGTC 
GAAGCCCGCGAGCGCAGCAGCGCGCGGCGAGCCGAAGTACTGCAGATCGAACAGGAACGCCTCGAAGAGTTG 
CGCAGCCAGCAGAACCTGCGCCAGGCCGAACTGGAAAAGCGCGAAGCCAGCGTCCAGCAGCGCAGCCTGGAA 
CTCGGCGAGCGCTTCAAGAAGCTGGAAAGCGCCCGCGAGAAGCTGGCGCAGATCGTCAAGGGTTTCAACGAG 
ACCGTGCAGTTCAATACCGCTCTGCACGCCATCAGTCATACCGGGTTGAAACGCCAGGAAGAGAGCACAGCC 
GAACTGGAATAA