ViewGene
Locus Name:
GeneID:
Location:

GeneID:6878
TrivialName: PA14_68470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68470
PAO1 Ortholog Locus:
Sequence Length:216
Protein Length:71
Start: 6108899
Stop: 6108684
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: emb|CAD78791.1| (BX294151) probable CsrA_thema carbon storage regulator homolog [Pirellula sp.]
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 16/62 (25%)
Sequence:
ATGGGTTTCCTGATACTCTCCCGCCGAGAAGGCGAAGGCATCACCCTGTCCCTCAAGGCCGACTACCCGGCG
GAGGAACTGATTCGGCAATTGCGCGAAGGCGGCATCCGGATCCTGGTCACCGATATCATCGGCAACCAGGCC
CGGGTCGGGATCGAGGCGCCGCGTGGCGTCCTGATCGTTCGCGACGAGTTGAAGACGGCACCGAAAGGCTGA
Translation:
MGFLILSRREGEGITLSLKADYPAEELIRQLREGGIRILVTDIIGNQARVGIEAPRGVLIVRDELKTAPKG*
AnnotationID:6879GeneID:6878
AnnotatorUID: danlee
Modification Date/Time: 2006-06-01 19:07:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|32044559|ref|ZP_00141660.1|  COG1551: Carbon storage regulator (could also regulate swarming 
and quorum sensing) [Pseudomonas aeruginosa UCBPP-PA14]
 gi|84324116|ref|ZP_00972181.1|  COG1551: Carbon storage regulator (could also regulate swarming 
and quorum sensing) [Pseudomonas aeruginosa 2192]
 gi|84317948|ref|ZP_00966383.1|  COG1551: Carbon storage regulator (could also regulate swarming 
and quorum sensing) [Pseudomonas aeruginosa C3719]
Length=71

 Score =  138 bits (348),  Expect = 6e-32
 Identities = 71/71 (100%), Positives = 71/71 (100%), Gaps = 0/71 (0%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:13462




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30837




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34863




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6878_cdd.html


    		




 
URL:









      

          
GC ORFID: 49880How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5372585Stop: 5372370

          
Length: 216


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: Homolog Bit Score 

          
Other Homologs:  

          
GC ORF Sequence

           
ATGGGTTTCCTGATACTCTCCCGCCGAGAAGGCGAAGGCATCACCCTGTCCCTCAAGGCCGACTACCCGGCG 
GAGGAACTGATTCGGCAATTGCGCGAAGGCGGCATCCGGATCCTGGTCACCGATATCATCGGCAACCAGGCC 
CGGGTCGGGATCGAGGCGCCGCGTGGCGTCCTGATCGTTCGCGACGAGTTGAAGACGGCACCGAAAGGCTGA