ViewGene

Locus Name:
GeneID:
Location:

GeneID:687
TrivialName: PA14_51430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51430
PAO1 Ortholog Locus:PA0996
Sequence Length:1554
Protein Length:517
Start: 4571469
Stop: 4569916
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04385.1|AE004532_9 (AE004532) probable coenzyme A ligase [Pseudomonas aeruginosa PAO1]
Identities = 513/517 (99%), Positives = 514/517 (99%)
Sequence:
ATGTCCACATTGGCCAACCTGACCGAGGTTCTGTTCCGCCTCGATTTCGATCCCGATACCGCCGTTTATCAC
TATCGGGGCCAGACTCTCAGCCGGCTGCAATGCCGGACCTACATTCTCTCCCAGGCCAGCCAACTGGCCCGC
CTGCTCAAGCCCGGCGATCGCGTGGTGCTGGCGTTGAACGACTCACCTTCGCTGGCCTGCCTGTTCCTGGCC
TGCATCGCGGTCGGCGCCATTCCCACCGTGATCAATCCCAAGTCCCGCGAGCAGGCCCTGGCCGATATCGCT
GCCGACTGCCAGGCCAGCCTGGTGGTACGTGAAGCCGATGCACCGTCGCTGAGCGGTCCTTTGGCGCCGTTG
ACCCTGCGTGCGGCCGCCGGTCGCCCTTTGCTCGACGATTTCTCGCTGGACGCGCTGGTCGGTCCTGCGGAC
CTCGATTGGAGTGCCTTCCATCGCCAGGACCCGGCGGCAGCCTGTTTCCTGCAATACACCTCGGGTTCCACC
GGGGCGCCCAAGGGGGTGATGCACAGCCTGCGCAACACGCTCGGATTCTGTCGGGCGTTCGCTACGGAGTTG
CTGGCATTGCAGGCGGGAGACCGGCTGTATTCGATTCCCAAGATGTTCTTTGGCTATGGCATGGGCAACAGC
CTGTTCTTTCCCTGGTTCAGCGGAGCCTCGGCGCTGCTCGACGATACCTGGCCGAGCCCGGAGCGGGTCCTG
GAGAACCTGGTCGCCTTCCGCCCCCGGGTCCTGTTTGGGGTGCCAGCCATCTATGCCTCGCTGCGTGCGCAG
GCCAGGGCGCTGTTGAGCAGCGTGCGCCTGGCGTTTTCCGCCGGCTCGCCGCTGCCGCGCGGCGAGTTCGAA
TTCTGGGCCGCGCACGGGCTGGAGATCTGCGACGGCATCGGGGCTACCGAGGTCGGCCATGTGTTCCTCGCC
AACCGCCCGGGGCAGGCGCGTGCCGACAGCACCGGGCTGCCGTTGCCTGGCTATGAGTGCCGGCTGGTGGAC
CGCGAAGGACACACTATCGAGGAAGCGGGCCAGCAAGGCGTGCTGTTGGTGCGTGGCCCTGGGCTGAGTCCG
GGTTACTGGCGGGCCAGCGAAGAGCAGCAGGCGCGCTTCGCAGGTGGCTGGTATCGCACCGGCGACCTGTTC
GAGCGCGACGAGTCGGGTGCCTACCGCCACTGTGGGCGGGAAGACGATCTGTTCAAGGTGAATGGCCGCTGG
GTGGTGCCGACCCAGGTCGAGCAGGCGATCTGCCGTCATCTGCCGGAAGTGAGCGAGGCGGTTCTGGTTCCT
ACCTGCCGGCTGCACGACGGCTTGCGTCCGACCCTGTTCGTCACCCTGGCCACTCCGCTGGACGACAACCAG
ATCCTGCTGGCGCAGCGTATCGACCAGCATCTCGCCGAACAGATTCCCTCGCACATGCTGCCTAGCCAATTG
CATGTGCTGCCGGCCTTGCCGCGCAACGACAACGGCAAGTTGGCGCGCGCCGAGCTGCGCCACCTGGCCGAC
ACCCTTTATCACGACAACCTTCCGGAGGAACGGGCATGTTGA
Translation:
MSTLANLTEVLFRLDFDPDTAVYHYRGQTLSRLQCRTYILSQASQLARLLKPGDRVVLALNDSPSLACLFLA
CIAVGAIPTVINPKSREQALADIAADCQASLVVREADAPSLSGPLAPLTLRAAAGRPLLDDFSLDALVGPAD
LDWSAFHRQDPAAACFLQYTSGSTGAPKGVMHSLRNTLGFCRAFATELLALQAGDRLYSIPKMFFGYGMGNS
LFFPWFSGASALLDDTWPSPERVLENLVAFRPRVLFGVPAIYASLRAQARALLSSVRLAFSAGSPLPRGEFE
FWAAHGLEICDGIGATEVGHVFLANRPGQARADSTGLPLPGYECRLVDREGHTIEEAGQQGVLLVRGPGLSP
GYWRASEEQQARFAGGWYRTGDLFERDESGAYRHCGREDDLFKVNGRWVVPTQVEQAICRHLPEVSEAVLVP
TCRLHDGLRPTLFVTLATPLDDNQILLAQRIDQHLAEQIPSHMLPSQLHVLPALPRNDNGKLARAELRHLAD
TLYHDNLPEERAC*
AnnotationID:696GeneID:687
AnnotatorUID: danlee
Modification Date/Time: 2004-05-14 17:05:46
Gene Name:pqsA
Confidence Code:1
GeneProduct:probable coenzyme A ligase
Cell Localization:()
Synonyms:PA0996
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(21) Quinolone signal response
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0365, COG0318, pfam00501
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases. Score:354, 1e-98
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II. Score: 286, 4e-78
pfam00501, AMP-binding, AMP-binding enzyme. Score: 231, 2e-61
Genomic Context:
part of pqsABCDE operon 
Comment:
ReferenceID:1377
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18519
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32099
Author/Investigator(s): Gallagher LA, McKnight SL, Kuznetsova MS, Pesci EC, Manoil C.
Title: Functions required for extracellular quinolone signaling by Pseudomonas aeruginosa.
PubMed: 12426334
MedLine:
Source:
J Bacteriol. 2002 Dec;184(23):6472-80.
Reference Type:Journal
Data:
URL:
Homologs By Global Alignment
Gene ID:687

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
1164 PA0996_tr translation of PA0996 517 99.22 99.41 0 2687.0
42761 gb|AAG04385.1|AE004532_9 (AE004532) probable coenzyme A ligase [Pseudomonas aeruginosa PAO1] 517 99.22 99.41 0 2687.0
GC ORFID: 43689How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0996Glimmer Score:
Start: 382438Stop: 383991
Length: 1554
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0996 translation of PA0996Homolog Bit Score 1039.0
Other Homologs: t_PA0996 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCACATTGGCCAACCTGACCGAGGTTCTGTTCCGCCTCGATTTCGATCCCGATACCGCCGTTTATCAC
TATCGGGGCCAGACTCTCAGCCGGCTGCAATGCCGGACCTACATTCTCTCCCAGGCCAGCCAACTGGCCCGC
CTGCTCAAGCCCGGCGATCGCGTGGTGCTGGCGTTGAACGACTCACCTTCGCTGGCCTGCCTGTTCCTGGCC
TGCATCGCGGTCGGCGCCATTCCCACCGTGATCAATCCCAAGTCCCGCGAGCAGGCCCTGGCCGATATCGCT
GCCGACTGCCAGGCCAGCCTGGTGGTACGTGAAGCCGATGCACCGTCGCTGAGCGGTCCTTTGGCGCCGTTG
ACCCTGCGTGCGGCCGCCGGTCGCCCTTTGCTCGACGATTTCTCGCTGGACGCGCTGGTCGGTCCTGCGGAC
CTCGATTGGAGTGCCTTCCATCGCCAGGACCCGGCGGCAGCCTGTTTCCTGCAATACACCTCGGGTTCCACC
GGGGCGCCCAAGGGGGTGATGCACAGCCTGCGCAACACGCTCGGATTCTGTCGGGCGTTCGCTACGGAGTTG
CTGGCATTGCAGGCGGGAGACCGGCTGTATTCGATTCCCAAGATGTTCTTTGGCTATGGCATGGGCAACAGC
CTGTTCTTTCCCTGGTTCAGCGGAGCCTCGGCGCTGCTCGACGATACCTGGCCGAGCCCGGAGCGGGTCCTG
GAGAACCTGGTCGCCTTCCGCCCCCGGGTCCTGTTTGGGGTGCCAGCCATCTATGCCTCGCTGCGTGCGCAG
GCCAGGGCGCTGTTGAGCAGCGTGCGCCTGGCGTTTTCCGCCGGCTCGCCGCTGCCGCGCGGCGAGTTCGAA
TTCTGGGCCGCGCACGGGCTGGAGATCTGCGACGGCATCGGGGCTACCGAGGTCGGCCATGTGTTCCTCGCC
AACCGCCCGGGGCAGGCGCGTGCCGACAGCACCGGGCTGCCGTTGCCTGGCTATGAGTGCCGGCTGGTGGAC
CGCGAAGGACACACTATCGAGGAAGCGGGCCAGCAAGGCGTGCTGTTGGTGCGTGGCCCTGGGCTGAGTCCG
GGTTACTGGCGGGCCAGCGAAGAGCAGCAGGCGCGCTTCGCAGGTGGCTGGTATCGCACCGGCGACCTGTTC
GAGCGCGACGAGTCGGGTGCCTACCGCCACTGTGGGCGGGAAGACGATCTGTTCAAGGTGAATGGCCGCTGG
GTGGTGCCGACCCAGGTCGAGCAGGCGATCTGCCGTCATCTGCCGGAAGTGAGCGAGGCGGTTCTGGTTCCT
ACCTGCCGGCTGCACGACGGCTTGCGTCCGACCCTGTTCGTCACCCTGGCCACTCCGCTGGACGACAACCAG
ATCCTGCTGGCGCAGCGTATCGACCAGCATCTCGCCGAACAGATTCCCTCGCACATGCTGCCTAGCCAATTG
CATGTGCTGCCGGCCTTGCCGCGCAACGACAACGGCAAGTTGGCGCGCGCCGAGCTGCGCCACCTGGCCGAC
ACCCTTTATCACGACAACCTTCCGGAGGAACGGGCATGTTGA