ViewGene
Locus Name:
GeneID:
Location:

GeneID:6869
TrivialName: PA14_68020
AnnotatorUID: danlee
Modification Date/Time:2006-08-22 20:08:33
LocusName:PA14_68020
PAO1 Ortholog Locus:
Sequence Length:519
Protein Length:172
Start: 6070099
Stop: 6070617
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08534.1|AE004927_12 (AE004927) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 167/172 (97%), Positives = 171/172 (99%). Putative frame-shift splits PAO1 PA5149 into two ORFs: GID6868 (PA14_68010) and GID6869 (PA14_68020).
Sequence:
ttgaccaaggcactgtgcctgtttggcataccgcagcgTATGCACGGacaCCTGCGCCGGCTGCGCGAGGGC
GCGCTGACCGACGACTGGTTCGAGGTCCTGCTCGACTATCCGCACTGCCAGGTGGCGCTGCGCGCCAGCATG
CTCGCTGCCAATCCGGCGCCACGCTTCAATGTGCACGGCGACCACGGCAGCCTGCTAAAGGCCGGCGCCGAC
ATCCAGGAAGCGCAACTGCTCCAGGGACTGCACCCCGGTTCCGCCGGCTGGGGCCGCGATCCCGACCTGTTG
CAGCATATCGACGGCCAGGGCCTGCGCCAGTCGCTGGTCACCCCGGCTGGCGACCAGAGCCGCTACTACCAG
GCGCTAGCCGCCGCCATCCGCGGTCAGTCGCGCAACCCGGTGTCGGCGCAACAGGCCTGCGCGCTGATGGCC
CTGCTGGAGTTGGCACGACGCTCCGCCGAGGAAGGCCGGAGCCTGCCGGTGGAGCTGCGCGACGAGGAACGC
CAGGCCTGGAACTGA
Translation:
MTKALCLFGIPQRMHGHLRRLREGALTDDWFEVLLDYPHCQVALRASMLAANPAPRFNVHGDHGSLLKAGAD
IQEAQLLQGLHPGSAGWGRDPDLLQHIDGQGLRQSLVTPAGDQSRYYQALAAAIRGQSRNPVSAQQACALMA
LLELARRSAEEGRSLPVELRDEERQAWN*
AnnotationID:6870GeneID:6869
AnnotatorUID: danlee
Modification Date/Time: 2006-03-21 11:11:25
Gene Name:
Confidence Code:4
GeneProduct:putative dehydrogenase, C-terminus
Cell Localization:()
Synonyms:PA5149 C-terminus
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|9951449|gb|AAG08534.1|  conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
 gi|15600342|ref|NP_253836.1|  hypothetical protein PA5149 [Pseudomonas aeruginosa PAO1]
 gi|84317781|ref|ZP_00966218.1|  COG0673: Predicted dehydrogenases and related proteins [Pseudomonas 
aeruginosa C3719]
Length=360

 Score =  326 bits (835),  Expect = 3e-88, Method: Composition-based stats.
 Identities = 167/172 (97%), Positives = 171/172 (99%), Gaps = 0/172 (0%)

gi|84323764|ref|ZP_00971831.1|  COG0673: Predicted dehydrogenases and related proteins [Pseudomonas 
aeruginosa 2192]
Length=360

 Score =  323 bits (828),  Expect = 2e-87, Method: Composition-based stats.
 Identities = 166/172 (96%), Positives = 170/172 (98%), Gaps = 0/172 (0%)








 
Structural Features:
COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].
             CD-Length = 342 residues, only  44.7% aligned
             Score = 50.6 bits (120), Expect = 1e-07
             Aligns with C-terminus of COG0673






   
Genomic Context:






   
Comment:
Putative frame-shift splits PAO1 PA5149 into two ORFs: GID6868 (PA14_68010) and GID6869 (PA14_68020).


















    ReferenceID:16623




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:30821




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34918




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:6869_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:6869
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
8047
                           PA5149_tr
                           translation of PA5149
                           360
                           46.66
                           47.50
                           188
                           884.0
     

     
     
202736
                           gb|AAG08534.1|AE004927_12
                           (AE004927) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           360
                           46.66
                           47.50
                           188
                           884.0
     

     
     
202740
                           gb|AAM42708.1|
                           (AE012463) oxidoreductase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           358
                           21.50
                           26.81
                           192
                           306.0
     

     
     
202739
                           gb|AAQ61183.1|
                           (AE016922) probable oxidoreductase [Chromobacterium violaceum ATCC 12472]
                           358
                           20.67
                           25.97
                           197
                           307.0
     

     
     
202737
                           emb|CAD18212.1|
                           (AL646082) PROBABLE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           383
                           20.62
                           25.84
                           211
                           352.0
     

     






      

          
GC ORFID: 49871How Found: Glimmer

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: Glimmer Score: 

          
Start: 5333785Stop: 5334303

          
Length: 519


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5149 translation of PA5149Homolog Bit Score 345.0

          
Other Homologs:  t_PA5149 translation of PA5149 (BLASTP 345)

          
GC ORF Sequence

           
ttgaccaaggcactgtgcctgtttggcataccgcagcgTATGCACGGacaCCTGCGCCGGCTGCGCGAGGGC 
GCGCTGACCGACGACTGGTTCGAGGTCCTGCTCGACTATCCGCACTGCCAGGTGGCGCTGCGCGCCAGCATG 
CTCGCTGCCAATCCGGCGCCACGCTTCAATGTGCACGGCGACCACGGCAGCCTGCTAAAGGCCGGCGCCGAC 
ATCCAGGAAGCGCAACTGCTCCAGGGACTGCACCCCGGTTCCGCCGGCTGGGGCCGCGATCCCGACCTGTTG 
CAGCATATCGACGGCCAGGGCCTGCGCCAGTCGCTGGTCACCCCGGCTGGCGACCAGAGCCGCTACTACCAG 
GCGCTAGCCGCCGCCATCCGCGGTCAGTCGCGCAACCCGGTGTCGGCGCAACAGGCCTGCGCGCTGATGGCC 
CTGCTGGAGTTGGCACGACGCTCCGCCGAGGAAGGCCGGAGCCTGCCGGTGGAGCTGCGCGACGAGGAACGC 
CAGGCCTGGAACTGA