ViewGene
Locus Name:
GeneID:
Location:

GeneID:686
TrivialName: PA14_55820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55820
PAO1 Ortholog Locus:PA4297
Sequence Length:1671
Protein Length:556
Start: 4986500
Stop: 4984830
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07685.1|AE004846_2 (AE004846) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 554/556 (99%), Positives = 554/556 (99%)
Sequence:
ATGAACGGATGGCCTGCAAGACAGCGCGGGGCGATCGGCATCCTGGCGGCGACCACCCTGCTGCTGGCCTTG
ATCTGCCTGTTGCTGGTGGTGGATACCGGGCGGCTCTACCTGGAGCAGCGCAACCTGCAGCGAGTGGCGGAC
GTGGCGGCGCTGGAGAGTGCCTCCCAGGGAGCCTTGTGCGGCGACCAGAGTTCTGCCCAGGCGACGTCTTTC
GCCAAGGCCAGCGCGATGCTCAACGGGTTCGATGCGGACGCCGCCGGCTCCAGCCTGTCGGCGGAGGTCGGC
GGCGTGCTGAGTGCCGGCGGCCTGCGCAGTTTCATAGCCAGCGCGTCGAACGCGGCTGCCGCCAACGAGGCG
GTGCATGTCGAGGTGACCAAGAGCGTTCCCGGCAGCCTGGTCGCCAACCTCGGGGGACTGTTCGGCGGCGGC
AATGCCAACGTCGATCTCCGCGCAGAGGCCGTGGCGCGACGCCTGCCGAACGCCACGATTTCCGCAGGTACG
GGGCTGGCCAGCGTGAACAGTGGCCAATCGGCGTTGCTCAACCCCATCCTGAGCGGATTGCTGGGCACCCAC
ATCGATCTCTCCGCGGCGGCCTACAACGGTATCGCCGACGCGAAGCTCAGTGTGCTGGACATTCTCGGCGCG
GATGGAATGGGCTTGATCGGGGTCGATACCAGCCTGGGGACCATCGAACAGTTGTTGAATACCAACGTCGGC
TTGCAGCAGGTACTCGCCGCCAGCGTGAACGTCCTGGCGAAGAACGGCGTAGCCTCGGTCGAGGCCCTGAGA
ACGCAATTGGTGGGGGTAAAGTCGGCCACGTTGAAACTGGGAGACTTGCTGGGGCTGAGCGCCGGCGAGGTG
AACAGCATGTCGCAGCTGGATACGGCGATCAATGCGCTGGATCTCATCATGGCGGTTGCCCAGGTCGCCAAC
AAGAATTCCGCGGTCGCCGTGAACCTGGGCATCCCCGGATTGGCCAATGCACGGCTCACGGTCGTAGAGCCA
AAGAGGATCGTCTCCGGGCCGCCAGGGCAGGATGAGAGCGGTGCCTGGCGCACGGAGGTGCGCCAGTCCCAG
GTACGACTTACGGCGGACATCGATTCCGGGTTCCTGTCCATTCTCGCCACCACGAAACTGCAACTGGCCATC
GAAGGCGCGTCGGGAGCCGTCTGGCTGAAAAGCATGGCCTGTACCCGCCCGGATACCGCGTTGGACTTCGGT
TGGAGAAGCAGCGGAGCGACGATAAAGATCGGCAGTCCGGCCAACATCGATCAGGTCGGCTCGATTCTGGTG
CTTGGCGGCTTGGTGCGATTGGATCTCAAGCTCGATACCTCGATCGCCGGCAGCTCGGGCGATACGCGATTC
AACGTGAAAGCCGACGGTTCCGATCTCGTCCAGAGCCGCAGGTTGCCGGAAAGCGGCTTTCTCGCCAGTACC
CTGAAAACCAGCATCAACGTCAATCCCGTGGTGCTCGGACTGTGCTTGCCTTTGCTGTGCGGCTCGACGGCG
CTCACCGACCTCATCGTGAATTCCGTGGTGGCACCTCTGGTCGATGGGCTGCTGACGCCGATCCTGAATCTG
GTCCTGCCCTTGCTGGGGGTACAACTTGGATACATCGACGCGGAGATTCTGAAGGTCGATGTCGGCAGGGCG
GAACTGCTGATCTAG
Translation:
MNGWPARQRGAIGILAATTLLLALICLLLVVDTGRLYLEQRNLQRVADVAALESASQGALCGDQSSAQATSF
AKASAMLNGFDADAAGSSLSAEVGGVLSAGGLRSFIASASNAAAANEAVHVEVTKSVPGSLVANLGGLFGGG
NANVDLRAEAVARRLPNATISAGTGLASVNSGQSALLNPILSGLLGTHIDLSAAAYNGIADAKLSVLDILGA
DGMGLIGVDTSLGTIEQLLNTNVGLQQVLAASVNVLAKNGVASVEALRTQLVGVKSATLKLGDLLGLSAGEV
NSMSQLDTAINALDLIMAVAQVANKNSAVAVNLGIPGLANARLTVVEPKRIVSGPPGQDESGAWRTEVRQSQ
VRLTADIDSGFLSILATTKLQLAIEGASGAVWLKSMACTRPDTALDFGWRSSGATIKIGSPANIDQVGSILV
LGGLVRLDLKLDTSIAGSSGDTRFNVKADGSDLVQSRRLPESGFLASTLKTSINVNPVVLGLCLPLLCGSTA
LTDLIVNSVVAPLVDGLLTPILNLVLPLLGVQLGYIDAEILKVDVGRAELLI*
AnnotationID:695GeneID:686
AnnotatorUID: diggins
Modification Date/Time: 2005-04-04 07:07:43
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA4297
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4655
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4655, Predicted membrane protein
CD-Length = 565 residues, 100.0% aligned
Score =  479 bits (1233), Expect = 4e-136
Identities = 239/575 (41%), Positives = 297/575 (51%), Gaps = 29/575 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:1375




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18517




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36660




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:686_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:686
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
1163
                           PA4297_tr
                           translation of PA4297
                           556
                           99.64
                           99.64
                           0
                           2689.0
     

     
     
42760
                           gb|AAG07685.1|AE004846_2
                           (AE004846) hypothetical protein PA4297 [Pseudomonas aeruginosa PAO1]
                           556
                           99.64
                           99.64
                           0
                           2689.0
     

     






      

          
GC ORFID: 43688How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4297Glimmer Score: 

          
Start: 4250176Stop: 4248506

          
Length: 1671


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4297 translation of PA4297Homolog Bit Score 1040.0

          
Other Homologs:  t_PA4297 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGGATGGCCTGCAAGACAGCGCGGGGCGATCGGCATCCTGGCGGCGACCACCCTGCTGCTGGCCTTG 
ATCTGCCTGTTGCTGGTGGTGGATACCGGGCGGCTCTACCTGGAGCAGCGCAACCTGCAGCGAGTGGCGGAC 
GTGGCGGCGCTGGAGAGTGCCTCCCAGGGAGCCTTGTGCGGCGACCAGAGTTCTGCCCAGGCGACGTCTTTC 
GCCAAGGCCAGCGCGATGCTCAACGGGTTCGATGCGGACGCCGCCGGCTCCAGCCTGTCGGCGGAGGTCGGC 
GGCGTGCTGAGTGCCGGCGGCCTGCGCAGTTTCATAGCCAGCGCGTCGAACGCGGCTGCCGCCAACGAGGCG 
GTGCATGTCGAGGTGACCAAGAGCGTTCCCGGCAGCCTGGTCGCCAACCTCGGGGGACTGTTCGGCGGCGGC 
AATGCCAACGTCGATCTCCGCGCAGAGGCCGTGGCGCGACGCCTGCCGAACGCCACGATTTCCGCAGGTACG 
GGGCTGGCCAGCGTGAACAGTGGCCAATCGGCGTTGCTCAACCCCATCCTGAGCGGATTGCTGGGCACCCAC 
ATCGATCTCTCCGCGGCGGCCTACAACGGTATCGCCGACGCGAAGCTCAGTGTGCTGGACATTCTCGGCGCG 
GATGGAATGGGCTTGATCGGGGTCGATACCAGCCTGGGGACCATCGAACAGTTGTTGAATACCAACGTCGGC 
TTGCAGCAGGTACTCGCCGCCAGCGTGAACGTCCTGGCGAAGAACGGCGTAGCCTCGGTCGAGGCCCTGAGA 
ACGCAATTGGTGGGGGTAAAGTCGGCCACGTTGAAACTGGGAGACTTGCTGGGGCTGAGCGCCGGCGAGGTG 
AACAGCATGTCGCAGCTGGATACGGCGATCAATGCGCTGGATCTCATCATGGCGGTTGCCCAGGTCGCCAAC 
AAGAATTCCGCGGTCGCCGTGAACCTGGGCATCCCCGGATTGGCCAATGCACGGCTCACGGTCGTAGAGCCA 
AAGAGGATCGTCTCCGGGCCGCCAGGGCAGGATGAGAGCGGTGCCTGGCGCACGGAGGTGCGCCAGTCCCAG 
GTACGACTTACGGCGGACATCGATTCCGGGTTCCTGTCCATTCTCGCCACCACGAAACTGCAACTGGCCATC 
GAAGGCGCGTCGGGAGCCGTCTGGCTGAAAAGCATGGCCTGTACCCGCCCGGATACCGCGTTGGACTTCGGT 
TGGAGAAGCAGCGGAGCGACGATAAAGATCGGCAGTCCGGCCAACATCGATCAGGTCGGCTCGATTCTGGTG 
CTTGGCGGCTTGGTGCGATTGGATCTCAAGCTCGATACCTCGATCGCCGGCAGCTCGGGCGATACGCGATTC 
AACGTGAAAGCCGACGGTTCCGATCTCGTCCAGAGCCGCAGGTTGCCGGAAAGCGGCTTTCTCGCCAGTACC 
CTGAAAACCAGCATCAACGTCAATCCCGTGGTGCTCGGACTGTGCTTGCCTTTGCTGTGCGGCTCGACGGCG 
CTCACCGACCTCATCGTGAATTCCGTGGTGGCACCTCTGGTCGATGGGCTGCTGACGCCGATCCTGAATCTG 
GTCCTGCCCTTGCTGGGGGTACAACTTGGATACATCGACGCGGAGATTCTGAAGGTCGATGTCGGCAGGGCG 
GAACTGCTGATCTAG